Wall clock time and date at job start Tue Mar 31 2020 08:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99830 * 2 1 4 4 H 1.48504 * 109.46874 * 269.99375 * 3 2 1 5 5 H 1.48490 * 109.47249 * 29.99836 * 3 2 1 6 6 H 1.48503 * 109.47144 * 149.99940 * 3 2 1 7 7 C 1.38975 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00171 * 186.35768 * 7 2 1 9 9 N 1.36983 * 119.99686 * 6.36164 * 7 2 1 10 10 C 1.34775 * 119.99861 * 60.15834 * 9 7 2 11 11 O 1.21633 * 119.99889 * 186.38579 * 10 9 7 12 12 C 1.47357 * 120.00234 * 6.37941 * 10 9 7 13 13 C 1.41312 * 126.42083 * 7.96636 * 12 10 9 14 14 N 1.30446 * 108.02866 * 180.02562 * 13 12 10 15 15 N 1.39938 * 108.91048 * 359.97438 * 14 13 12 16 16 C 1.46505 * 125.74567 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47134 * 305.02285 * 16 15 14 18 18 C 1.38237 * 120.00398 * 269.72998 * 17 16 15 19 19 C 1.38236 * 120.00302 * 179.76873 * 18 17 16 20 20 C 1.38237 * 119.99647 * 0.50973 * 19 18 17 21 21 C 1.38234 * 120.00013 * 359.73888 * 20 19 18 22 22 C 1.38232 * 120.00079 * 0.02562 * 21 20 19 23 23 C 1.34286 * 108.49975 * 359.73142 * 15 14 13 24 24 C 1.46493 * 119.99783 * 239.87616 * 9 7 2 25 25 C 1.54267 * 110.03231 * 59.91737 * 24 9 7 26 26 C 1.54966 * 104.15840 * 217.13292 * 25 24 9 27 27 C 1.54889 * 102.77677 * 37.89186 * 26 25 24 28 28 C 1.53877 * 110.03354 * 302.69781 * 24 9 7 29 29 H 0.97001 * 120.00026 * 4.95725 * 1 2 3 30 30 H 1.08001 * 125.99109 * 359.97438 * 13 12 10 31 31 H 1.08999 * 109.47317 * 65.03176 * 16 15 14 32 32 H 1.09002 * 109.46309 * 185.02235 * 16 15 14 33 33 H 1.08003 * 119.99775 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.99875 * 180.22513 * 19 18 17 35 35 H 1.08003 * 119.99812 * 179.73008 * 20 19 18 36 36 H 1.07998 * 119.99715 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.99783 * 179.97438 * 22 21 20 38 38 H 1.07993 * 126.30121 * 180.26519 * 23 15 14 39 39 H 1.09006 * 110.02085 * 181.30870 * 24 9 7 40 40 H 1.08996 * 110.48830 * 335.78484 * 25 24 9 41 41 H 1.09004 * 110.48792 * 98.42703 * 25 24 9 42 42 H 1.08995 * 110.72677 * 279.57179 * 26 25 24 43 43 H 1.09008 * 110.92296 * 156.29351 * 26 25 24 44 44 H 1.09005 * 110.48096 * 203.40212 * 27 26 25 45 45 H 1.08998 * 110.60291 * 80.81879 * 27 26 25 46 46 H 1.09003 * 110.03304 * 238.56708 * 28 24 9 47 47 H 1.09000 * 110.03555 * 0.02562 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2035 0.0005 8 1 3.0840 -1.2064 0.1041 9 7 1.3304 -2.3862 -0.1304 10 6 0.5923 -2.6211 -1.2333 11 8 -0.1019 -3.6176 -1.2997 12 6 0.6262 -1.6705 -2.3588 13 6 1.4929 -0.5628 -2.4956 14 7 1.2143 0.0309 -3.6232 15 7 0.1719 -0.6582 -4.2532 16 6 -0.4310 -0.3066 -5.5413 17 6 -0.9065 1.1227 -5.5000 18 6 -2.1937 1.4114 -5.0868 19 6 -2.6282 2.7230 -5.0444 20 6 -1.7790 3.7451 -5.4251 21 6 -0.4934 3.4561 -5.8432 22 6 -0.0573 2.1449 -5.8810 23 6 -0.1790 -1.6990 -3.4806 24 6 1.4120 -3.3982 0.9256 25 6 0.8834 -2.8193 2.2543 26 6 1.8098 -3.4371 3.3321 27 6 3.1938 -3.4342 2.6367 28 6 2.8802 -3.7895 1.1685 29 1 -0.4850 0.8369 -0.0726 30 1 2.2524 -0.2602 -1.7899 31 1 0.3100 -0.4204 -6.3325 32 1 -1.2768 -0.9654 -5.7383 33 1 -2.8588 0.6125 -4.7940 34 1 -3.6327 2.9488 -4.7181 35 1 -2.1199 4.7695 -5.3961 36 1 0.1699 4.2546 -6.1410 37 1 0.9469 1.9190 -6.2080 38 1 -0.9509 -2.4231 -3.6954 39 1 0.8327 -4.2780 0.6450 40 1 0.9670 -1.7326 2.2570 41 1 -0.1502 -3.1238 2.4187 42 1 1.4994 -4.4543 3.5705 43 1 1.8276 -2.8197 4.2303 44 1 3.8453 -4.1870 3.0806 45 1 3.6532 -2.4479 2.7008 46 1 3.0133 -4.8592 1.0066 47 1 3.5322 -3.2260 0.5010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125298487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:57 Heat of formation + Delta-G solvation = 61.583501 kcal Electronic energy + Delta-G solvation = -29851.677164 eV Core-core repulsion = 26000.579854 eV Total energy + Delta-G solvation = -3851.097310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.06506 -40.43090 -39.94137 -38.09528 -36.13532 -34.82923 -33.22100 -31.85842 -31.68402 -30.81007 -29.40381 -28.66750 -27.04633 -26.78233 -23.64684 -23.32328 -22.79096 -21.51112 -21.27916 -21.00293 -20.74977 -18.84485 -17.74142 -17.42369 -17.33796 -16.85067 -16.56083 -16.16173 -16.09935 -15.75143 -15.56617 -15.17490 -15.05462 -14.79139 -14.35253 -14.28994 -14.08735 -13.84239 -13.73824 -13.52060 -13.30659 -13.14262 -12.92634 -12.50968 -12.38347 -12.19673 -12.15874 -12.06228 -11.96075 -11.81609 -11.76795 -11.61838 -11.35579 -11.22947 -10.78286 -10.33546 -10.08794 -9.86491 -9.82236 -9.33776 -8.87671 -8.19695 -6.14441 0.23625 0.45859 0.91192 1.37184 1.45223 1.50386 1.67783 1.80313 2.26035 2.87918 2.97277 3.10612 3.27181 3.57219 3.78365 3.93851 3.99619 4.05318 4.07849 4.09911 4.21760 4.25634 4.38492 4.42604 4.58763 4.64662 4.68341 4.73022 4.82502 4.86657 4.89187 4.97221 4.97797 5.01989 5.09699 5.14515 5.18558 5.25021 5.31183 5.46137 5.48725 5.54930 5.57885 5.58849 5.60096 5.69327 5.89775 6.04233 6.20319 6.23388 6.79075 6.92418 7.10557 7.78768 8.23656 8.80535 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.003621 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.666468 B = 7730.607482 C = 8501.762486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.038 3.962 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.348 4.348 8 H 0.087 0.913 9 N -0.448 5.448 10 C 0.572 3.428 11 O -0.652 6.652 12 C -0.253 4.253 13 C 0.093 3.907 14 N -0.335 5.335 15 N -0.361 5.361 16 C 0.169 3.831 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.134 4.134 22 C -0.098 4.098 23 C 0.091 3.909 24 C 0.125 3.875 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.107 4.107 28 C -0.120 4.120 29 H 0.262 0.738 30 H 0.200 0.800 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.191 0.809 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 3.845 -7.744 8.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.169 4.169 3 Si 0.756 3.244 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.169 1.169 7 C -0.476 4.476 8 H 0.104 0.896 9 N -0.166 5.166 10 C 0.365 3.635 11 O -0.543 6.543 12 C -0.267 4.267 13 C -0.092 4.092 14 N -0.156 5.156 15 N -0.141 5.141 16 C 0.050 3.950 17 C -0.119 4.119 18 C -0.133 4.133 19 C -0.153 4.153 20 C -0.136 4.136 21 C -0.152 4.152 22 C -0.117 4.117 23 C -0.059 4.059 24 C 0.021 3.979 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.159 4.159 29 H 0.072 0.928 30 H 0.216 0.784 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.144 0.856 38 H 0.208 0.792 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.119 4.475 -8.597 9.693 hybrid contribution -0.426 0.289 0.713 0.879 sum -0.307 4.764 -7.885 9.218 Atomic orbital electron populations 1.69998 1.07396 1.27867 1.44967 1.26155 0.95509 1.01650 0.93553 0.85931 0.79784 0.79429 0.79226 1.19044 1.21686 1.16945 1.19099 0.91493 0.82370 1.54613 0.89583 1.43137 1.44548 1.15422 1.13516 1.17855 0.79831 0.83216 0.82641 1.90497 1.46697 1.33046 1.84022 1.20121 1.05393 1.03095 0.98073 1.25152 0.98939 0.92202 0.92925 1.77013 1.06615 1.21321 1.10642 1.48570 1.27448 1.20262 1.17801 1.20903 0.99258 0.93857 0.81002 1.19944 0.94783 0.95182 1.01967 1.21289 0.95702 0.97851 0.98481 1.21426 1.01058 0.92606 1.00224 1.21529 0.93935 1.00283 0.97890 1.21456 0.96792 0.96669 1.00288 1.21228 0.99096 0.93000 0.98365 1.22969 0.99199 0.92567 0.91173 1.21760 0.96499 0.91145 0.88458 1.22468 0.97515 1.00836 0.94646 1.22419 0.94847 1.00713 0.96954 1.22219 0.96882 1.01653 0.93728 1.22341 0.95062 1.00324 0.98145 0.92843 0.78372 0.87418 0.85349 0.85591 0.84274 0.83697 0.84036 0.85614 0.79201 0.92846 0.92294 0.94640 0.90721 0.90838 0.89699 0.92074 0.91434 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.24 12.15 21.67 0.26 -46.98 16 2 C 0.04 1.90 2.97 84.93 0.25 2.16 16 3 Si 0.93 39.69 27.66 68.60 1.90 41.59 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.35 -17.03 5.08 84.07 0.43 -16.60 16 8 H 0.09 4.05 7.12 -2.91 -0.02 4.03 16 9 N -0.45 -22.72 2.32 -613.10 -1.42 -24.14 16 10 C 0.57 31.00 6.96 86.64 0.60 31.60 16 11 O -0.65 -37.92 16.28 -4.13 -0.07 -37.99 16 12 C -0.25 -12.37 5.19 -20.15 -0.10 -12.47 16 13 C 0.09 4.40 8.74 85.65 0.75 5.14 16 14 N -0.33 -14.42 12.32 -56.26 -0.69 -15.11 16 15 N -0.36 -13.19 3.64 -349.95 -1.27 -14.46 16 16 C 0.17 4.33 6.62 85.63 0.57 4.89 16 17 C -0.12 -3.20 5.30 -19.87 -0.11 -3.30 16 18 C -0.11 -3.01 9.70 22.27 0.22 -2.79 16 19 C -0.14 -3.20 10.05 22.27 0.22 -2.97 16 20 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 21 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 22 C -0.10 -2.58 9.70 22.27 0.22 -2.36 16 23 C 0.09 3.75 11.26 84.29 0.95 4.70 16 24 C 0.13 5.63 3.28 45.72 0.15 5.78 16 25 C -0.12 -4.88 6.42 31.70 0.20 -4.67 16 26 C -0.11 -3.47 6.91 31.91 0.22 -3.25 16 27 C -0.11 -3.22 6.83 31.67 0.22 -3.00 16 28 C -0.12 -4.37 6.26 31.32 0.20 -4.17 16 29 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 30 H 0.20 9.52 3.25 -2.91 -0.01 9.51 16 31 H 0.11 2.32 8.09 -2.39 -0.02 2.30 16 32 H 0.13 2.48 8.00 -2.39 -0.02 2.46 16 33 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 38 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 39 H 0.05 2.60 6.97 -2.38 -0.02 2.59 16 40 H 0.06 2.82 7.09 -2.39 -0.02 2.80 16 41 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.04 16 44 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.06 2.32 6.82 -2.39 -0.02 2.30 16 Total: -1.00 -69.09 379.89 5.11 -63.98 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.97 Total: 39.70 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.43 Total: -6.59 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -3.12 Total: -100.68 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.07 Total: -37.99 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.90 Total: 41.59 kcal Total: -69.09 5.11 -63.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125298487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.562 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds