Wall clock time and date at job start Tue Mar 31 2020 04:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.63095 * 2 1 4 4 C 1.53240 * 109.62626 * 239.41381 * 2 1 3 5 5 N 1.46898 * 109.33935 * 186.46032 * 4 2 1 6 6 C 1.46896 * 111.00248 * 187.25769 * 5 4 2 7 7 C 1.53000 * 109.47542 * 169.99889 * 6 5 4 8 8 H 1.09004 * 109.47053 * 55.00348 * 7 6 5 9 9 C 1.47196 * 109.47100 * 294.99902 * 7 6 5 10 10 N 5.43599 * 150.79138 * 297.20516 * 2 1 3 11 11 C 1.53001 * 109.47129 * 174.99927 * 7 6 5 12 12 C 1.50704 * 109.46853 * 185.00328 * 11 7 6 13 13 H 1.07994 * 119.99991 * 359.97438 * 12 11 7 14 14 C 1.37882 * 119.99765 * 180.02562 * 12 11 7 15 15 N 1.31511 * 120.00001 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99959 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47264 * 90.00084 * 16 14 12 18 18 H 1.48500 * 109.46886 * 209.99933 * 16 14 12 19 19 H 1.48502 * 109.47252 * 330.00051 * 16 14 12 20 20 C 1.46894 * 111.27053 * 63.10687 * 5 4 2 21 21 C 1.53695 * 109.26004 * 296.75899 * 20 5 4 22 22 N 1.47079 * 109.62854 * 120.38879 * 2 1 3 23 23 C 1.34775 * 120.88307 * 350.89539 * 22 2 1 24 24 O 1.21514 * 119.99950 * 354.38431 * 23 22 2 25 25 O 1.34643 * 120.00154 * 174.38675 * 23 22 2 26 26 C 1.45196 * 116.99739 * 179.97438 * 25 23 22 27 27 C 1.52996 * 109.47272 * 60.00216 * 26 25 23 28 28 C 1.53000 * 109.47347 * 299.99959 * 26 25 23 29 29 C 1.53003 * 109.46973 * 179.97438 * 26 25 23 30 30 H 1.09003 * 109.46998 * 307.93166 * 1 2 3 31 31 H 1.09001 * 109.47204 * 67.93268 * 1 2 3 32 32 H 1.08996 * 109.47533 * 187.93891 * 1 2 3 33 33 H 1.08997 * 109.49899 * 306.42099 * 4 2 1 34 34 H 1.08997 * 109.48955 * 66.50567 * 4 2 1 35 35 H 1.09006 * 109.47317 * 290.00219 * 6 5 4 36 36 H 1.09006 * 109.47484 * 49.99807 * 6 5 4 37 37 H 1.09002 * 109.47448 * 304.99794 * 11 7 6 38 38 H 1.08998 * 109.47100 * 65.00063 * 11 7 6 39 39 H 0.96999 * 120.00044 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.49358 * 56.85238 * 20 5 4 41 41 H 1.08998 * 109.49649 * 176.90770 * 20 5 4 42 42 H 1.09005 * 109.79571 * 294.41821 * 21 20 5 43 43 H 1.08998 * 109.70503 * 173.68544 * 21 20 5 44 44 H 1.09002 * 109.47146 * 299.99412 * 27 26 25 45 45 H 1.08997 * 109.47336 * 179.97438 * 27 26 25 46 46 H 1.09007 * 109.47403 * 59.99478 * 27 26 25 47 47 H 1.09001 * 109.46954 * 180.02562 * 28 26 25 48 48 H 1.08995 * 109.47384 * 300.00046 * 28 26 25 49 49 H 1.09002 * 109.47268 * 60.00467 * 28 26 25 50 50 H 1.08998 * 109.47064 * 300.00351 * 29 26 25 51 51 H 1.09007 * 109.46675 * 60.00236 * 29 26 25 52 52 H 1.09001 * 109.47572 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7344 -1.2425 5 7 3.5053 -0.8665 -1.1594 6 6 4.0567 -1.4103 -2.4076 7 6 5.5826 -1.3016 -2.3813 8 1 5.9664 -1.7920 -1.4866 9 6 5.9732 0.1175 -2.3688 10 7 6.2748 1.2128 -2.3593 11 6 6.1638 -1.9797 -3.6236 12 6 7.6683 -1.9811 -3.5376 13 1 8.1607 -1.5419 -2.6826 14 6 8.4162 -2.5422 -4.5510 15 7 9.7292 -2.5430 -4.4762 16 14 7.5644 -3.3012 -6.0301 17 1 7.3769 -2.2662 -7.0784 18 1 8.3983 -4.4057 -6.5687 19 1 6.2410 -3.8351 -5.6193 20 6 3.9015 -1.6871 -0.0073 21 6 3.4638 -0.9865 1.2887 22 7 2.0240 -0.7008 1.1950 23 6 1.1807 -1.0666 2.1806 24 8 0.0140 -0.7296 2.1382 25 8 1.6309 -1.8054 3.2122 26 6 0.6669 -2.1622 4.2377 27 6 -0.4657 -2.9780 3.6112 28 6 0.0929 -0.8893 4.8632 29 6 1.3574 -2.9958 5.3190 30 1 -0.3633 0.6317 0.8106 31 1 -0.3634 0.3861 -0.9524 32 1 -0.3634 -1.0178 0.1419 33 1 1.5923 -1.7248 -1.2932 34 1 1.7810 -0.1675 -2.1354 35 1 3.7687 -2.4570 -2.5065 36 1 3.6668 -0.8448 -3.2540 37 1 5.8021 -3.0064 -3.6799 38 1 5.8512 -1.4350 -4.5145 39 1 10.2553 -2.9381 -5.1890 40 1 3.4232 -2.6643 -0.0751 41 1 4.9843 -1.8117 -0.0045 42 1 4.0151 -0.0538 1.4085 43 1 3.6529 -1.6389 2.1411 44 1 -0.9579 -2.3845 2.8407 45 1 -1.1892 -3.2462 4.3811 46 1 -0.0569 -3.8849 3.1655 47 1 -0.6304 -1.1572 5.6333 48 1 0.8998 -0.3081 5.3096 49 1 -0.3992 -0.2958 4.0927 50 1 1.7660 -3.9026 4.8730 51 1 2.1646 -2.4149 5.7654 52 1 0.6337 -3.2641 6.0886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126366160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:03 Heat of formation + Delta-G solvation = -38.896107 kcal Electronic energy + Delta-G solvation = -30529.126478 eV Core-core repulsion = 26529.507698 eV Total energy + Delta-G solvation = -3999.618780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.22877 -39.38453 -37.60396 -36.33060 -34.87366 -34.33515 -33.43466 -32.58342 -31.74597 -28.76110 -27.71666 -27.65507 -27.49270 -25.43585 -23.61229 -23.37010 -21.63324 -21.44970 -20.70113 -19.40460 -17.76521 -17.00875 -16.87172 -16.72424 -16.41073 -15.75232 -15.38780 -15.10610 -14.81895 -14.76961 -14.55315 -14.14734 -14.00167 -13.77763 -13.33934 -13.28930 -12.87259 -12.67764 -12.61750 -12.52957 -12.42524 -12.22090 -12.16190 -12.07970 -11.99652 -11.75610 -11.65568 -11.53016 -11.42028 -11.38703 -11.29720 -11.25403 -11.22122 -10.76435 -10.56207 -10.26104 -10.01180 -9.83856 -9.52435 -9.35879 -8.93236 -8.64417 -8.34700 -6.13356 -4.14254 1.93744 2.67579 3.24613 3.31806 3.32824 3.56165 3.63511 3.72970 3.81345 4.35560 4.43333 4.47928 4.61138 4.63270 4.68902 4.77281 4.87472 5.01106 5.12312 5.15966 5.17375 5.21518 5.24342 5.30953 5.36017 5.39686 5.47527 5.49087 5.52622 5.55240 5.56783 5.59903 5.69639 5.71095 5.81373 5.86224 5.99577 6.00090 6.01992 6.12258 6.16693 6.24224 6.26407 6.42813 6.90037 6.91549 6.95362 7.07945 7.27553 7.60373 8.19608 8.37482 8.51725 8.90088 9.46378 10.99680 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002433 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.612658 B =11506.358894 C =11904.131007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.164 3.836 3 H 0.084 0.916 4 C 0.046 3.954 5 N -0.541 5.541 6 C 0.061 3.939 7 C 0.020 3.980 8 H 0.106 0.894 9 C 0.252 3.748 10 N -0.469 5.469 11 C -0.005 4.005 12 C -0.528 4.528 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.896 5.896 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.263 1.263 20 C 0.034 3.966 21 C 0.116 3.884 22 N -0.593 5.593 23 C 0.654 3.346 24 O -0.566 6.566 25 O -0.365 6.365 26 C 0.137 3.863 27 C -0.182 4.182 28 C -0.182 4.182 29 C -0.141 4.141 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.021 0.979 39 H 0.265 0.735 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.023 -1.961 16.662 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.062 3.938 3 H 0.102 0.898 4 C -0.083 4.083 5 N -0.265 5.265 6 C -0.068 4.068 7 C -0.002 4.002 8 H 0.123 0.877 9 C -0.065 4.065 10 N -0.146 5.146 11 C -0.044 4.044 12 C -0.566 4.566 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.188 1.188 20 C -0.094 4.094 21 C -0.006 4.006 22 N -0.334 5.334 23 C 0.409 3.591 24 O -0.456 6.456 25 O -0.280 6.280 26 C 0.100 3.900 27 C -0.239 4.239 28 C -0.239 4.239 29 C -0.198 4.198 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.582 0.164 16.716 27.299 hybrid contribution -0.529 -1.710 -0.987 2.044 sum -22.111 -1.546 15.729 27.179 Atomic orbital electron populations 1.22195 0.92194 1.03925 1.01428 1.21372 0.95419 0.95519 0.81477 0.89802 1.22573 0.87834 0.99827 0.98046 1.61938 1.09831 1.51218 1.03533 1.22271 0.94119 0.99033 0.91355 1.18996 0.93063 0.84425 1.03670 0.87664 1.28669 0.91681 0.94327 0.91836 1.81009 1.10045 1.13481 1.10065 1.19647 0.97682 0.95797 0.91292 1.21010 0.88608 1.39240 1.07720 0.90758 1.24991 0.94690 0.95382 0.98032 1.69901 1.04819 1.45005 1.33696 0.86822 0.80029 0.79356 0.83343 1.20232 1.21269 1.18771 1.22683 1.02340 0.94440 0.89946 1.21970 0.79210 1.01319 0.98129 1.47170 1.07800 1.59895 1.18564 1.18049 0.83749 0.77504 0.79748 1.90919 1.16575 1.59643 1.78447 1.86311 1.43305 1.66192 1.32211 1.22023 0.87602 0.95073 0.85311 1.22508 0.98243 1.00438 1.02752 1.22502 1.01689 0.97556 1.02184 1.21863 1.01340 0.99870 0.96769 0.89947 0.93126 0.91753 0.94111 0.89175 0.92711 0.89937 0.94554 0.96065 0.92539 0.93895 0.88348 0.90270 0.88660 0.89367 0.91342 0.92274 0.91345 0.92265 0.89360 0.91442 0.91458 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.63 37.16 0.28 -1.13 16 2 C 0.16 1.73 3.65 -67.49 -0.25 1.48 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.05 0.48 4.91 -3.70 -0.02 0.46 16 5 N -0.54 -6.45 4.33 -234.03 -1.01 -7.46 16 6 C 0.06 0.79 4.32 -3.83 -0.02 0.77 16 7 C 0.02 0.34 2.14 -93.41 -0.20 0.14 16 8 H 0.11 1.66 6.19 -51.93 -0.32 1.34 16 9 C 0.25 5.00 13.67 -20.76 -0.28 4.71 16 10 N -0.47 -10.33 18.54 42.15 0.78 -9.55 16 11 C -0.01 -0.11 3.49 -27.88 -0.10 -0.20 16 12 C -0.53 -13.89 9.15 -34.44 -0.32 -14.20 16 13 H 0.07 2.15 7.84 -52.49 -0.41 1.74 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 16 Si 0.88 20.31 27.47 -169.99 -4.67 15.65 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 20 C 0.03 0.37 5.48 -3.47 -0.02 0.35 16 21 C 0.12 1.19 6.66 -3.36 -0.02 1.17 16 22 N -0.59 -6.56 3.00 -170.39 -0.51 -7.07 16 23 C 0.65 7.68 7.51 54.05 0.41 8.08 16 24 O -0.57 -7.09 7.60 -19.28 -0.15 -7.23 16 25 O -0.37 -3.96 8.57 -40.33 -0.35 -4.30 16 26 C 0.14 1.19 1.13 -90.62 -0.10 1.09 16 27 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 28 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 29 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 30 H 0.08 0.94 6.60 -51.93 -0.34 0.59 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.72 6.96 -51.93 -0.36 0.36 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.86 7.99 -51.93 -0.41 0.45 16 35 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.08 1.05 7.97 -51.93 -0.41 0.63 16 37 H 0.04 0.71 7.20 -51.93 -0.37 0.33 16 38 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 1.07 6.07 -51.93 -0.32 0.76 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 0.89 6.97 -51.93 -0.36 0.53 16 44 H 0.09 0.92 5.88 -51.93 -0.31 0.62 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.93 5.88 -51.93 -0.31 0.62 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 52 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -31.52 402.28 -7.83 -39.35 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.98 Total: -1.08 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 0.22 Total: 1.57 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.03 Total: -50.01 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.49 Total: -11.54 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.52 -7.83 -39.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126366160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.453 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds