Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48507 * 109.47163 * 240.00344 * 3 2 1 5 5 H 1.48499 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47226 * 120.00353 * 3 2 1 7 7 C 1.37878 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00226 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99765 * 83.45078 * 10 9 7 12 12 C 1.53004 * 109.46789 * 93.04541 * 11 10 9 13 13 F 1.39904 * 109.47212 * 60.00091 * 12 11 10 14 14 F 1.39900 * 109.47056 * 179.97438 * 12 11 10 15 15 F 1.39896 * 109.47370 * 299.99652 * 12 11 10 16 16 C 1.34778 * 120.00221 * 263.45513 * 10 9 7 17 17 O 1.21560 * 120.00014 * 183.15136 * 16 10 9 18 18 C 1.47796 * 119.99673 * 3.14895 * 16 10 9 19 19 C 1.39617 * 120.11941 * 44.21704 * 18 16 10 20 20 C 1.37904 * 119.91357 * 179.97438 * 19 18 16 21 21 C 1.38475 * 120.15756 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 119.87481 * 179.97438 * 21 20 19 23 23 C 1.38697 * 120.24721 * 0.02562 * 21 20 19 24 24 F 1.35098 * 119.95922 * 179.97438 * 23 21 20 25 25 C 1.38133 * 120.07601 * 359.69469 * 23 21 20 26 26 H 0.97003 * 119.99604 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46679 * 60.00031 * 9 7 2 28 28 H 1.08997 * 109.47058 * 300.00776 * 9 7 2 29 29 H 1.09003 * 109.47258 * 213.04214 * 11 10 9 30 30 H 1.08998 * 109.47755 * 333.04461 * 11 10 9 31 31 H 1.08005 * 120.04706 * 0.02562 * 19 18 16 32 32 H 1.08002 * 119.91716 * 179.97438 * 20 19 18 33 33 H 1.08006 * 120.07853 * 180.27532 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.7889 -4.0754 1.2599 12 6 1.9448 -5.2197 1.8249 13 9 1.9175 -6.2759 0.9078 14 9 2.5047 -5.6620 3.0283 15 9 0.6410 -4.7680 2.0549 16 6 2.5398 -4.2114 -1.1601 17 8 3.2850 -5.1718 -1.1543 18 6 2.0029 -3.7003 -2.4388 19 6 1.9803 -2.3272 -2.6902 20 6 1.4789 -1.8549 -3.8849 21 6 0.9975 -2.7394 -4.8354 22 17 0.3673 -2.1368 -6.3367 23 6 1.0158 -4.1047 -4.5922 24 9 0.5442 -4.9623 -5.5234 25 6 1.5211 -4.5889 -3.4012 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 3.8048 -4.4274 1.0807 30 1 2.8102 -3.2526 1.9744 31 1 2.3557 -1.6356 -1.9503 32 1 1.4610 -0.7927 -4.0793 33 1 1.5395 -5.6524 -3.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156491216.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = -212.911522 kcal Electronic energy + Delta-G solvation = -27753.562713 eV Core-core repulsion = 22918.853570 eV Total energy + Delta-G solvation = -4834.709143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.039 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.71576 -48.80293 -47.27536 -47.15328 -40.05379 -38.07823 -36.38382 -35.59337 -33.02054 -31.23039 -30.62892 -29.05326 -27.33661 -24.22179 -23.34531 -22.63107 -22.51157 -19.65712 -18.26352 -18.14948 -17.64672 -17.29642 -16.82397 -16.44702 -16.17881 -15.70077 -15.58184 -15.43722 -14.64974 -14.22427 -14.09722 -14.07360 -13.82090 -13.65171 -13.43256 -13.35806 -13.34172 -13.11156 -12.84219 -12.61609 -12.38225 -11.96547 -11.88911 -11.65845 -11.50971 -11.27522 -11.14791 -10.91938 -10.74118 -10.40954 -10.09364 -9.63171 -8.86167 -8.82997 -8.42184 -8.28810 -6.45067 -4.55491 0.85690 1.32006 2.06814 2.75991 3.07233 3.07833 3.15835 3.18727 3.33222 3.78187 4.08251 4.18817 4.23510 4.39020 4.58779 4.80705 4.84610 4.95656 5.27319 5.38537 5.41266 5.61467 5.72444 5.92272 6.11641 6.24620 6.42613 6.56071 6.92008 6.97266 7.08832 7.45468 7.70530 7.81196 8.37800 8.54842 9.11342 10.60460 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.005511 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.163870 B = 5079.677988 C = 7534.896096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.074 3.926 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.226 3.774 10 N -0.588 5.588 11 C 0.084 3.916 12 C 0.430 3.570 13 F -0.178 7.178 14 F -0.189 7.189 15 F -0.180 7.180 16 C 0.563 3.437 17 O -0.541 6.541 18 C -0.094 4.094 19 C -0.064 4.064 20 C -0.092 4.092 21 C -0.054 4.054 22 Cl -0.060 7.060 23 C 0.086 3.914 24 F -0.131 7.131 25 C -0.096 4.096 26 H 0.271 0.729 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.192 0.808 32 H 0.146 0.854 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 -3.815 -3.135 5.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.132 4.132 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.087 0.913 9 C 0.107 3.893 10 N -0.318 5.318 11 C -0.043 4.043 12 C 0.375 3.625 13 F -0.159 7.159 14 F -0.171 7.171 15 F -0.162 7.162 16 C 0.352 3.648 17 O -0.420 6.420 18 C -0.097 4.097 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.082 4.082 22 Cl -0.031 7.031 23 C 0.066 3.934 24 F -0.110 7.110 25 C -0.116 4.116 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.148 0.852 31 H 0.208 0.792 32 H 0.163 0.837 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.450 -4.182 -3.293 5.859 hybrid contribution -0.121 0.705 -0.121 0.725 sum 2.329 -3.477 -3.414 5.401 Atomic orbital electron populations 1.69914 1.06079 1.28082 1.46709 1.24964 0.94858 0.99350 0.94076 0.86598 0.79701 0.82376 0.79227 1.19641 1.20909 1.19843 1.21343 0.93800 0.90210 1.54193 0.91303 1.19867 0.87350 0.81903 1.00177 1.48062 1.45234 1.35055 1.03434 1.22440 0.97198 0.95233 0.89396 1.21523 0.80115 0.85100 0.75805 1.93212 1.96477 1.59905 1.66345 1.93145 1.85162 1.90868 1.47912 1.93196 1.39526 1.88853 1.94578 1.18232 0.80653 0.82131 0.83793 1.90764 1.37012 1.26909 1.87302 1.19683 1.01583 0.94047 0.94390 1.22871 0.93498 0.95296 0.96544 1.21018 0.98030 0.99964 0.92058 1.21262 1.04158 0.92160 0.90626 1.98365 1.85464 1.87904 1.31356 1.17049 1.02427 0.85548 0.88373 1.91510 1.86276 1.69311 1.63889 1.21023 0.98324 1.01160 0.91070 0.91896 0.93060 0.93568 0.86535 0.85244 0.79161 0.83651 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.20 13.29 55.43 0.74 -20.47 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 17.83 29.54 -169.99 -5.02 12.81 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.56 -12.03 6.37 -34.44 -0.22 -12.25 16 8 H 0.07 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.23 4.66 4.51 -5.19 -0.02 4.64 16 10 N -0.59 -10.84 2.38 -176.20 -0.42 -11.26 16 11 C 0.08 1.33 5.44 -4.04 -0.02 1.31 16 12 C 0.43 6.99 3.29 37.16 0.12 7.11 16 13 F -0.18 -3.19 15.77 2.25 0.04 -3.15 16 14 F -0.19 -2.83 17.32 2.25 0.04 -2.79 16 15 F -0.18 -3.16 16.43 2.25 0.04 -3.12 16 16 C 0.56 10.66 6.87 -12.35 -0.08 10.58 16 17 O -0.54 -11.00 15.57 5.31 0.08 -10.91 16 18 C -0.09 -1.66 4.90 -104.98 -0.51 -2.18 16 19 C -0.06 -1.12 7.63 -39.19 -0.30 -1.42 16 20 C -0.09 -1.45 9.81 -39.62 -0.39 -1.84 16 21 C -0.05 -0.84 6.33 -39.32 -0.25 -1.09 16 22 Cl -0.06 -0.84 28.60 -51.86 -1.48 -2.32 16 23 C 0.09 1.37 7.27 -39.45 -0.29 1.08 16 24 F -0.13 -2.04 16.83 2.25 0.04 -2.01 16 25 C -0.10 -1.57 9.65 -39.12 -0.38 -1.95 16 26 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 27 H 0.05 1.12 5.78 -51.93 -0.30 0.82 16 28 H 0.05 1.03 7.43 -51.93 -0.39 0.65 16 29 H 0.12 1.70 7.56 -51.93 -0.39 1.31 16 30 H 0.13 1.86 8.05 -51.93 -0.42 1.44 16 31 H 0.19 3.59 4.38 -52.48 -0.23 3.36 16 32 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 33 H 0.15 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 320.00 15.07 4.82 4.82 Total: -1.00 -24.39 320.00 -5.69 -30.08 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.12 Total: 2.75 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -2.44 Total: 5.57 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.32 Total: -31.73 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 0.15 Total: -11.07 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.81 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.48 Total: -2.32 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -24.39 -5.69 -30.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156491216.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.830 kcal (2) G-P(sol) polarization free energy of solvation -24.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds