Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48507 * 109.47163 * 240.00344 * 3 2 1 5 5 H 1.48499 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47226 * 120.00353 * 3 2 1 7 7 C 1.37878 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00226 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99765 * 83.45078 * 10 9 7 12 12 C 1.53004 * 109.46789 * 93.04541 * 11 10 9 13 13 F 1.39904 * 109.47212 * 60.00091 * 12 11 10 14 14 F 1.39900 * 109.47056 * 179.97438 * 12 11 10 15 15 F 1.39896 * 109.47370 * 299.99652 * 12 11 10 16 16 C 1.34778 * 120.00221 * 263.45513 * 10 9 7 17 17 O 1.21560 * 120.00014 * 183.15136 * 16 10 9 18 18 C 1.47796 * 119.99673 * 3.14895 * 16 10 9 19 19 C 1.39617 * 120.11941 * 44.21704 * 18 16 10 20 20 C 1.37904 * 119.91357 * 179.97438 * 19 18 16 21 21 C 1.38475 * 120.15756 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 119.87481 * 179.97438 * 21 20 19 23 23 C 1.38697 * 120.24721 * 0.02562 * 21 20 19 24 24 F 1.35098 * 119.95922 * 179.97438 * 23 21 20 25 25 C 1.38133 * 120.07601 * 359.69469 * 23 21 20 26 26 H 0.97003 * 119.99604 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46679 * 60.00031 * 9 7 2 28 28 H 1.08997 * 109.47058 * 300.00776 * 9 7 2 29 29 H 1.09003 * 109.47258 * 213.04214 * 11 10 9 30 30 H 1.08998 * 109.47755 * 333.04461 * 11 10 9 31 31 H 1.08005 * 120.04706 * 0.02562 * 19 18 16 32 32 H 1.08002 * 119.91716 * 179.97438 * 20 19 18 33 33 H 1.08006 * 120.07853 * 180.27532 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.7889 -4.0754 1.2599 12 6 1.9448 -5.2197 1.8249 13 9 1.9175 -6.2759 0.9078 14 9 2.5047 -5.6620 3.0283 15 9 0.6410 -4.7680 2.0549 16 6 2.5398 -4.2114 -1.1601 17 8 3.2850 -5.1718 -1.1543 18 6 2.0029 -3.7003 -2.4388 19 6 1.9803 -2.3272 -2.6902 20 6 1.4789 -1.8549 -3.8849 21 6 0.9975 -2.7394 -4.8354 22 17 0.3673 -2.1368 -6.3367 23 6 1.0158 -4.1047 -4.5922 24 9 0.5442 -4.9623 -5.5234 25 6 1.5211 -4.5889 -3.4012 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 3.8048 -4.4274 1.0807 30 1 2.8102 -3.2526 1.9744 31 1 2.3557 -1.6356 -1.9503 32 1 1.4610 -0.7927 -4.0793 33 1 1.5395 -5.6524 -3.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156491216.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = -222.755516 kcal Electronic energy + Delta-G solvation = -27753.989581 eV Core-core repulsion = 22918.853570 eV Total energy + Delta-G solvation = -4835.136011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.039 amu Computer time = 5.19 seconds Orbital eigenvalues (eV) -51.05207 -50.06520 -48.57974 -48.53606 -41.48626 -39.42106 -37.59282 -37.13216 -34.69438 -32.57128 -31.95195 -30.45812 -28.94539 -25.59666 -24.96879 -23.93553 -23.86005 -21.05612 -19.61029 -19.48854 -19.06774 -18.80224 -18.23552 -17.80578 -17.62069 -17.05717 -16.94195 -16.78184 -16.25640 -15.65200 -15.44676 -15.44559 -15.07928 -14.99061 -14.81503 -14.72058 -14.69795 -14.47174 -14.28213 -14.06524 -13.82949 -13.35241 -13.26212 -13.06304 -12.82579 -12.77855 -12.63799 -12.38711 -12.08179 -11.94255 -11.74656 -11.13169 -10.56448 -10.13844 -9.85096 -9.72013 -8.18475 -6.32267 -0.46126 0.02500 0.84456 1.34940 1.50758 1.54536 1.59141 1.72558 1.96251 2.40846 2.47606 2.86956 2.93515 3.07611 3.12916 3.26923 3.43896 3.63714 3.99011 4.05664 4.14053 4.37336 4.44928 4.61102 4.69831 4.84608 5.10084 5.22061 5.23309 5.47749 5.60638 5.73610 6.00673 6.24834 6.75460 6.96476 7.37356 8.87068 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.005511 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.163870 B = 5079.677988 C = 7534.896096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.038 3.962 3 Si 0.946 3.054 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.241 3.759 10 N -0.589 5.589 11 C 0.081 3.919 12 C 0.434 3.566 13 F -0.188 7.188 14 F -0.179 7.179 15 F -0.189 7.189 16 C 0.563 3.437 17 O -0.557 6.557 18 C -0.109 4.109 19 C -0.070 4.070 20 C -0.089 4.089 21 C -0.053 4.053 22 Cl -0.042 7.042 23 C 0.087 3.913 24 F -0.128 7.128 25 C -0.095 4.095 26 H 0.269 0.731 27 H 0.038 0.962 28 H 0.028 0.972 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.179 0.821 32 H 0.162 0.838 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -3.424 -3.679 5.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.091 0.909 9 C 0.122 3.878 10 N -0.319 5.319 11 C -0.045 4.045 12 C 0.379 3.621 13 F -0.170 7.170 14 F -0.161 7.161 15 F -0.171 7.171 16 C 0.352 3.648 17 O -0.437 6.437 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.107 4.107 21 C -0.080 4.080 22 Cl -0.013 7.013 23 C 0.067 3.933 24 F -0.107 7.107 25 C -0.115 4.115 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.150 0.850 30 H 0.163 0.837 31 H 0.195 0.805 32 H 0.180 0.820 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.161 -3.801 -3.833 6.255 hybrid contribution -0.347 0.531 0.013 0.634 sum 2.813 -3.270 -3.820 5.762 Atomic orbital electron populations 1.70014 1.07370 1.28457 1.48539 1.25529 0.95227 1.01822 0.93972 0.85778 0.78504 0.79141 0.79413 1.18588 1.21724 1.19846 1.21494 0.93948 0.90419 1.52814 0.90851 1.19521 0.87298 0.82417 0.98602 1.47998 1.44934 1.34548 1.04395 1.22657 0.97540 0.95614 0.88655 1.21514 0.79759 0.84902 0.75955 1.93193 1.96500 1.60426 1.66833 1.93164 1.84910 1.90757 1.47241 1.93182 1.40306 1.88937 1.94639 1.18408 0.80330 0.81810 0.84213 1.90747 1.37803 1.27599 1.87580 1.19674 1.02704 0.94464 0.94348 1.22671 0.94218 0.94883 0.97005 1.21143 0.97319 1.00836 0.91445 1.21308 1.03518 0.92003 0.91214 1.98374 1.85124 1.87687 1.30131 1.17054 1.02223 0.85800 0.88237 1.91519 1.86193 1.69270 1.63700 1.21075 0.98023 1.01414 0.90976 0.92183 0.94361 0.95405 0.85036 0.83726 0.80480 0.82046 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.06 13.29 21.45 0.28 -43.77 16 2 C 0.04 1.68 5.46 84.65 0.46 2.14 16 3 Si 0.95 35.73 29.54 68.60 2.03 37.76 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.29 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.55 -23.26 6.37 25.60 0.16 -23.10 16 8 H 0.07 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.24 9.93 4.51 85.63 0.39 10.32 16 10 N -0.59 -21.40 2.38 -829.63 -1.97 -23.37 16 11 C 0.08 2.47 5.44 86.38 0.47 2.94 16 12 C 0.43 13.71 3.29 71.98 0.24 13.95 16 13 F -0.19 -6.60 15.77 44.97 0.71 -5.90 16 14 F -0.18 -5.11 17.32 44.97 0.78 -4.33 16 15 F -0.19 -6.56 16.43 44.97 0.74 -5.82 16 16 C 0.56 21.00 6.87 86.77 0.60 21.59 16 17 O -0.56 -22.24 15.57 -3.90 -0.06 -22.30 16 18 C -0.11 -3.79 4.90 -20.09 -0.10 -3.89 16 19 C -0.07 -2.37 7.63 22.52 0.17 -2.20 16 20 C -0.09 -2.68 9.81 22.25 0.22 -2.46 16 21 C -0.05 -1.54 6.33 22.44 0.14 -1.40 16 22 Cl -0.04 -1.09 28.60 -2.72 -0.08 -1.17 16 23 C 0.09 2.64 7.27 22.35 0.16 2.80 16 24 F -0.13 -3.79 16.83 44.97 0.76 -3.03 16 25 C -0.10 -3.03 9.65 22.57 0.22 -2.82 16 26 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 27 H 0.04 1.69 5.78 -2.39 -0.01 1.68 16 28 H 0.03 1.25 7.43 -2.39 -0.02 1.24 16 29 H 0.13 3.63 7.56 -2.39 -0.02 3.62 16 30 H 0.14 3.94 8.05 -2.39 -0.02 3.92 16 31 H 0.18 6.56 4.38 -2.91 -0.01 6.55 16 32 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -49.73 320.00 7.51 -42.22 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.20 Total: 11.83 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 3.13 Total: 17.88 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -1.69 Total: -67.14 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 9 Polarization: -22.06 SS G_CDS: 2.98 Total: -19.08 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -49.73 7.51 -42.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156491216.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.535 kcal (2) G-P(sol) polarization free energy of solvation -49.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.19 seconds