Wall clock time and date at job start Tue Mar 31 2020 07:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 H 1.09000 * 109.47123 * 54.76649 * 3 2 1 5 5 C 1.50698 * 109.47041 * 174.76327 * 3 2 1 6 6 H 1.08000 * 120.00605 * 114.82334 * 5 3 2 7 7 C 1.37881 * 120.00005 * 294.83051 * 5 3 2 8 8 N 1.31513 * 120.00053 * 163.58959 * 7 5 3 9 9 Si 1.86798 * 119.99910 * 343.59486 * 7 5 3 10 10 H 1.48499 * 109.46948 * 270.00084 * 9 7 5 11 11 H 1.48502 * 109.47163 * 30.00070 * 9 7 5 12 12 H 1.48504 * 109.47275 * 150.00044 * 9 7 5 13 13 N 1.46501 * 109.47366 * 294.76029 * 3 2 1 14 14 C 1.34777 * 119.99620 * 85.00176 * 13 3 2 15 15 O 1.21589 * 120.00135 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99963 * 180.02562 * 14 13 3 17 17 C 1.40180 * 119.99860 * 183.83820 * 16 14 13 18 18 C 1.38312 * 120.01711 * 20.53375 * 17 16 14 19 19 C 1.39726 * 119.83173 * 179.74880 * 18 17 16 20 20 C 1.43194 * 120.07230 * 180.23106 * 19 18 17 21 21 N 8.18711 * 44.99191 * 5.27756 * 2 1 3 22 22 C 1.39750 * 119.85490 * 0.52643 * 19 18 17 23 23 C 1.37830 * 120.02809 * 359.72428 * 22 19 18 24 24 C 1.38772 * 120.17085 * 0.02562 * 23 22 19 25 25 O 1.35832 * 119.92976 * 179.97438 * 24 23 22 26 26 C 1.42896 * 117.00068 * 0.02562 * 25 24 23 27 27 F 1.39900 * 109.47185 * 299.99971 * 26 25 24 28 28 F 1.39900 * 109.47096 * 60.00024 * 26 25 24 29 29 H 1.09001 * 109.46963 * 299.99839 * 1 2 3 30 30 H 1.09005 * 109.47114 * 59.99488 * 1 2 3 31 31 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46963 * 240.00161 * 2 1 3 33 33 H 1.08997 * 109.47380 * 120.00349 * 2 1 3 34 34 H 0.97005 * 120.00303 * 354.88998 * 8 7 5 35 35 H 0.96999 * 120.00132 * 265.00589 * 13 3 2 36 36 H 0.96991 * 119.99887 * 3.82702 * 16 14 13 37 37 H 1.08000 * 120.08696 * 0.02562 * 18 17 16 38 38 H 1.08000 * 119.98333 * 179.70410 * 22 19 18 39 39 H 1.07993 * 119.91214 * 179.97438 * 23 22 19 40 40 H 1.09005 * 109.47592 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 0.8394 5 6 3.5414 1.4445 0.1297 6 1 4.1531 1.8118 -0.6811 7 6 4.1344 0.9771 1.2834 8 7 5.4140 0.6737 1.2887 9 14 3.1200 0.7749 2.8389 10 1 3.1610 2.0348 3.6239 11 1 1.7141 0.4632 2.4761 12 1 3.6785 -0.3342 3.6534 13 7 1.6574 2.0958 -1.2542 14 6 0.4406 2.6626 -1.3749 15 8 -0.3398 2.6313 -0.4429 16 7 0.0883 3.2631 -2.5289 17 6 -1.1448 3.9223 -2.6279 18 6 -1.8046 4.3315 -1.4833 19 6 -3.0310 4.9929 -1.5867 20 6 -3.7161 5.4232 -0.4052 21 7 -4.2599 5.7638 0.5324 22 6 -3.5906 5.2281 -2.8456 23 6 -2.9305 4.8132 -3.9822 24 6 -1.7099 4.1609 -3.8810 25 8 -1.0639 3.7536 -5.0043 26 6 -1.6987 4.0305 -6.2542 27 9 -2.9489 3.4036 -6.2913 28 9 -1.8656 5.4122 -6.3965 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9240 0.7076 0.4643 35 1 2.2798 2.1204 -1.9978 36 1 0.6881 3.2394 -3.2907 37 1 -1.3708 4.1443 -0.5121 38 1 -4.5407 5.7349 -2.9277 39 1 -3.3648 4.9956 -4.9540 40 1 -1.0793 3.6532 -7.0679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157370321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:55 Heat of formation + Delta-G solvation = -109.715551 kcal Electronic energy + Delta-G solvation = -29297.072994 eV Core-core repulsion = 24748.484975 eV Total energy + Delta-G solvation = -4548.588019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.78579 -47.76595 -41.02654 -39.56761 -38.11555 -36.44282 -35.67588 -34.48626 -32.60133 -31.59917 -30.96972 -29.60137 -27.17467 -26.73637 -23.72381 -23.55409 -22.37681 -21.21313 -19.87310 -19.53814 -19.40972 -18.58080 -18.38157 -18.34222 -17.24236 -16.40288 -16.32241 -15.65632 -15.16001 -15.13829 -14.82994 -14.41515 -14.31620 -14.11135 -14.05420 -13.95433 -13.83394 -13.46942 -13.33003 -12.98097 -12.86763 -12.70798 -12.59686 -12.37320 -12.22896 -12.03310 -11.79116 -11.68705 -10.89276 -10.75021 -10.65375 -10.49690 -9.94710 -9.68538 -9.51602 -9.09519 -8.93695 -8.45862 -8.33398 -7.95627 -6.63199 -4.28549 0.51518 1.04292 2.05420 2.57040 2.68114 2.84840 3.02280 3.38380 3.43339 3.46556 3.56872 3.75202 3.78701 3.84741 4.19512 4.39549 4.46144 4.47493 4.65480 4.88049 5.10895 5.17497 5.45089 5.49879 5.76349 5.99521 6.03303 6.06231 6.18886 6.24588 6.29868 6.58915 6.73812 6.79880 6.86357 6.94942 7.06515 7.32123 7.38403 7.43190 7.66199 8.18591 8.45260 8.64928 8.93403 9.40103 10.76391 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.003265 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.050895 B = 8572.525132 C = 9954.220411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.263 3.737 4 H 0.046 0.954 5 C -0.620 4.620 6 H 0.062 0.938 7 C 0.043 3.957 8 N -0.896 5.896 9 Si 1.034 2.966 10 H -0.283 1.283 11 H -0.264 1.264 12 H -0.284 1.284 13 N -0.707 5.707 14 C 0.694 3.306 15 O -0.575 6.575 16 N -0.683 5.683 17 C 0.178 3.822 18 C -0.064 4.064 19 C -0.030 4.030 20 C 0.263 3.737 21 N -0.420 5.420 22 C -0.064 4.064 23 C -0.170 4.170 24 C 0.089 3.911 25 O -0.319 6.319 26 C 0.414 3.586 27 F -0.197 7.197 28 F -0.197 7.197 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.270 0.730 35 H 0.392 0.608 36 H 0.411 0.589 37 H 0.182 0.818 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 6.698 -18.449 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.160 3.840 4 H 0.064 0.936 5 C -0.657 4.657 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.529 5.529 9 Si 0.861 3.139 10 H -0.210 1.210 11 H -0.189 1.189 12 H -0.210 1.210 13 N -0.357 5.357 14 C 0.395 3.605 15 O -0.454 6.454 16 N -0.329 5.329 17 C 0.080 3.920 18 C -0.088 4.088 19 C -0.034 4.034 20 C -0.052 4.052 21 N -0.095 5.095 22 C -0.086 4.086 23 C -0.189 4.189 24 C 0.041 3.959 25 O -0.236 6.236 26 C 0.324 3.676 27 F -0.178 7.178 28 F -0.179 7.179 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.225 0.775 36 H 0.246 0.754 37 H 0.198 0.802 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.208 6.616 -14.490 22.023 hybrid contribution 0.564 0.365 -3.060 3.133 sum -14.644 6.981 -17.550 23.900 Atomic orbital electron populations 1.21870 0.97211 0.98861 1.02043 1.22292 0.93941 0.99685 1.01290 1.19086 0.95645 0.88298 0.80973 0.93633 1.22075 0.89529 1.48679 1.05461 0.91966 1.25652 0.96923 0.92246 1.01536 1.70831 1.08326 1.42336 1.31361 0.84238 0.76351 0.77551 0.75783 1.20983 1.18913 1.20953 1.45599 1.12849 1.58173 1.19069 1.16092 0.83662 0.78650 0.82084 1.90793 1.51246 1.64551 1.38842 1.42693 1.18134 1.56221 1.15863 1.16607 0.87828 0.97697 0.89898 1.21824 0.92947 0.93510 1.00469 1.15862 0.95499 1.04272 0.87760 1.25496 0.93377 0.93478 0.92860 1.81243 1.09114 1.09239 1.09898 1.20829 0.99675 0.98379 0.89725 1.21153 0.94439 1.02761 1.00521 1.18662 0.92660 1.00064 0.84477 1.86551 1.47742 1.76469 1.12868 1.23373 0.80885 0.75001 0.88367 1.93113 1.46133 1.82179 1.96413 1.93110 1.95774 1.33378 1.95650 0.92822 0.93327 0.95181 0.93150 0.91838 0.91976 0.77524 0.75383 0.80155 0.84486 0.83867 0.80022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.52 37.16 0.32 -2.45 16 2 C -0.13 -2.82 4.92 -26.73 -0.13 -2.95 16 3 C 0.26 5.88 1.79 -69.08 -0.12 5.75 16 4 H 0.05 1.11 6.19 -51.93 -0.32 0.79 16 5 C -0.62 -15.89 9.02 -34.44 -0.31 -16.20 16 6 H 0.06 1.67 7.96 -52.49 -0.42 1.25 16 7 C 0.04 1.18 5.32 -17.82 -0.09 1.08 16 8 N -0.90 -25.92 13.70 55.43 0.76 -25.16 16 9 Si 1.03 24.24 26.19 -169.99 -4.45 19.78 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.26 -5.81 5.58 56.52 0.32 -5.50 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.71 -12.88 5.03 -59.81 -0.30 -13.18 16 14 C 0.69 11.86 7.00 -86.92 -0.61 11.25 16 15 O -0.58 -11.33 10.36 5.29 0.05 -11.27 16 16 N -0.68 -8.91 5.33 -14.14 -0.08 -8.98 16 17 C 0.18 2.24 6.51 -83.54 -0.54 1.69 16 18 C -0.06 -0.87 8.49 -39.00 -0.33 -1.20 16 19 C -0.03 -0.35 5.74 -106.85 -0.61 -0.96 16 20 C 0.26 3.52 15.33 -22.47 -0.34 3.18 16 21 N -0.42 -6.46 18.54 41.84 0.78 -5.69 16 22 C -0.06 -0.59 9.74 -39.17 -0.38 -0.98 16 23 C -0.17 -1.55 8.23 -39.53 -0.33 -1.88 16 24 C 0.09 0.92 6.51 -38.91 -0.25 0.66 16 25 O -0.32 -2.64 9.78 -19.21 -0.19 -2.83 16 26 C 0.41 2.22 5.98 101.05 0.60 2.83 16 27 F -0.20 -1.39 15.57 2.25 0.04 -1.36 16 28 F -0.20 -1.32 15.57 2.25 0.04 -1.29 16 29 H 0.05 1.10 7.86 -51.93 -0.41 0.69 16 30 H 0.05 0.93 5.64 -51.93 -0.29 0.64 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.40 5.11 -51.93 -0.27 1.14 16 34 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 35 H 0.39 6.25 8.54 -40.82 -0.35 5.90 16 36 H 0.41 4.25 8.27 -40.82 -0.34 3.91 16 37 H 0.18 2.90 5.41 -52.49 -0.28 2.61 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.14 1.11 5.07 -52.49 -0.27 0.84 16 40 H 0.18 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -31.63 344.20 -5.18 -36.81 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -3.87 Total: 8.15 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.14 Total: -0.16 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 1.16 Total: -53.01 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.13 Total: -14.10 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.07 Total: -2.64 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.45 Total: 19.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.63 -5.18 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157370321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.908 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds