Wall clock time and date at job start Tue Mar 31 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50711 * 109.46871 * 2 1 4 4 C 1.38240 * 119.99676 * 269.72530 * 3 2 1 5 5 C 1.38233 * 119.99283 * 179.74321 * 4 3 2 6 6 C 1.38235 * 120.00595 * 0.52914 * 5 4 3 7 7 C 1.50689 * 120.00557 * 179.76801 * 6 5 4 8 8 H 1.08999 * 109.47501 * 174.57349 * 7 6 5 9 9 C 1.50705 * 109.47086 * 54.56830 * 7 6 5 10 10 C 1.38674 * 120.41424 * 87.00731 * 9 7 6 11 11 C 1.38625 * 118.41681 * 179.78205 * 10 9 7 12 12 C 1.38230 * 119.16403 * 0.47432 * 11 10 9 13 13 N 1.31855 * 120.76020 * 359.76720 * 12 11 10 14 14 C 1.31887 * 121.72786 * 359.97438 * 13 12 11 15 15 N 1.46501 * 109.47133 * 294.57291 * 7 6 5 16 16 C 1.46505 * 119.99875 * 6.27821 * 15 7 6 17 17 C 1.53001 * 109.46848 * 107.23415 * 16 15 7 18 18 C 1.34781 * 120.00365 * 186.28143 * 15 7 6 19 19 O 1.21686 * 119.99581 * 359.97438 * 18 15 7 20 20 C 1.46371 * 120.00141 * 180.02562 * 18 15 7 21 21 H 1.07999 * 119.99966 * 359.97438 * 20 18 15 22 22 C 1.40054 * 119.99837 * 179.97438 * 20 18 15 23 23 N 1.30673 * 119.99908 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99744 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47608 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47164 * 119.99853 * 24 22 20 27 27 H 1.48503 * 109.47092 * 239.99631 * 24 22 20 28 28 C 1.38241 * 119.99412 * 359.75018 * 6 5 4 29 29 C 1.38233 * 119.99649 * 89.99659 * 3 2 1 30 30 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47603 * 300.00014 * 1 2 3 32 32 H 1.09007 * 109.47102 * 60.00445 * 1 2 3 33 33 H 1.08997 * 109.47383 * 240.00431 * 2 1 3 34 34 H 1.08997 * 109.47147 * 119.99596 * 2 1 3 35 35 H 1.07994 * 120.00343 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.99911 * 180.29606 * 5 4 3 37 37 H 1.07999 * 120.79074 * 0.02700 * 10 9 7 38 38 H 1.08007 * 120.41802 * 180.22324 * 11 10 9 39 39 H 1.07994 * 119.61887 * 179.79248 * 12 11 10 40 40 H 1.08000 * 119.61863 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.47000 * 227.23124 * 16 15 7 42 42 H 1.08995 * 109.46988 * 347.23531 * 16 15 7 43 43 H 1.08996 * 109.47032 * 292.16185 * 17 16 15 44 44 H 1.08999 * 109.47163 * 52.17093 * 17 16 15 45 45 H 1.09004 * 109.46732 * 172.16343 * 17 16 15 46 46 H 0.97001 * 119.99624 * 179.97438 * 23 22 20 47 47 H 1.08001 * 119.99674 * 180.02562 * 28 6 5 48 48 H 1.07991 * 120.00235 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7237 3.3757 -1.1972 6 6 2.9541 4.0275 0.0000 7 6 3.4558 5.4484 0.0000 8 1 3.4853 5.8233 1.0231 9 6 2.5312 6.3076 -0.8235 10 6 1.4122 6.8884 -0.2459 11 6 0.5926 7.6747 -1.0407 12 6 0.9102 7.8444 -2.3753 13 7 1.9801 7.2725 -2.8919 14 6 2.7850 6.5223 -2.1647 15 7 4.8028 5.4907 -0.5746 16 6 5.3864 4.2826 -1.1630 17 6 5.4120 4.4187 -2.6867 18 6 5.5051 6.6410 -0.5619 19 8 5.0201 7.6445 -0.0735 20 6 6.8506 6.6834 -1.1365 21 1 7.2808 5.7928 -1.5702 22 6 7.5802 7.8788 -1.1237 23 7 7.0594 8.9564 -0.5993 24 14 9.2976 7.9327 -1.8563 25 1 9.6541 6.5902 -2.3817 26 1 9.3331 8.9229 -2.9623 27 1 10.2713 8.3276 -0.8069 28 6 2.7238 3.3757 1.1971 29 6 2.2626 2.0725 1.1972 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0927 1.5599 -2.1325 36 1 2.9034 3.8850 -2.1325 37 1 1.1869 6.7351 0.7991 38 1 -0.2853 8.1455 -0.6234 39 1 0.2750 8.4527 -3.0019 40 1 3.6519 6.0698 -2.6231 41 1 6.4034 4.1529 -0.7926 42 1 4.7855 3.4166 -0.8856 43 1 4.3916 4.4085 -3.0696 44 1 5.8933 5.3578 -2.9596 45 1 5.9696 3.5865 -3.1164 46 1 7.5649 9.7843 -0.5901 47 1 2.9033 3.8850 2.1324 48 1 2.0830 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170598992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:08 Heat of formation + Delta-G solvation = 28.247346 kcal Electronic energy + Delta-G solvation = -30139.723038 eV Core-core repulsion = 26352.606074 eV Total energy + Delta-G solvation = -3787.116964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.45074 -39.15777 -37.73675 -35.25558 -33.64320 -32.83180 -32.34990 -31.28331 -30.89563 -29.55645 -29.00861 -26.60961 -25.26576 -23.52988 -23.21548 -22.70735 -22.05244 -21.63430 -20.49101 -18.85835 -16.75418 -16.72410 -16.13614 -16.03855 -15.55086 -15.41716 -15.15467 -14.90066 -14.21376 -14.08773 -13.72650 -13.70916 -13.59631 -13.41499 -13.08517 -12.82820 -12.76974 -12.56365 -12.35167 -12.21937 -11.98685 -11.91887 -11.44910 -11.34077 -11.28735 -11.07906 -11.00583 -10.93164 -10.80481 -10.69212 -10.30316 -10.22006 -10.03141 -9.30024 -9.00037 -8.87082 -8.77615 -8.56446 -8.25963 -7.57899 -7.32773 -6.20128 -4.64351 1.35272 1.50933 1.67615 1.80327 3.12103 3.20965 3.24525 3.76488 4.08852 4.29265 4.47268 4.57092 4.68422 4.78425 4.92430 5.05289 5.08771 5.11649 5.21452 5.24879 5.34680 5.40981 5.48593 5.53422 5.58459 5.64176 5.71415 5.72695 5.77810 5.83875 5.89800 5.98788 6.01626 6.09987 6.11942 6.15518 6.23280 6.31375 6.43535 6.51161 6.54497 6.64732 6.67735 6.74609 6.84096 6.99772 7.08378 7.22253 7.43950 7.57865 8.09434 8.32879 8.50313 9.01836 9.38451 10.55928 10.74727 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.004195 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.133847 B = 6673.149235 C = 8037.867727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.078 4.078 7 C 0.238 3.762 8 H 0.080 0.920 9 C -0.109 4.109 10 C -0.071 4.071 11 C -0.178 4.178 12 C 0.081 3.919 13 N -0.487 5.487 14 C 0.119 3.881 15 N -0.636 5.636 16 C 0.116 3.884 17 C -0.179 4.179 18 C 0.558 3.442 19 O -0.568 6.568 20 C -0.538 4.538 21 H 0.075 0.925 22 C 0.087 3.913 23 N -0.765 5.765 24 Si 0.903 3.097 25 H -0.263 1.263 26 H -0.276 1.276 27 H -0.277 1.277 28 C -0.103 4.103 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.267 0.733 47 H 0.122 0.878 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 -14.456 0.469 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.140 4.140 5 C -0.113 4.113 6 C -0.078 4.078 7 C 0.133 3.867 8 H 0.098 0.902 9 C -0.112 4.112 10 C -0.097 4.097 11 C -0.198 4.198 12 C -0.076 4.076 13 N -0.196 5.196 14 C -0.037 4.037 15 N -0.374 5.374 16 C -0.008 4.008 17 C -0.237 4.237 18 C 0.365 3.635 19 O -0.450 6.450 20 C -0.574 4.574 21 H 0.093 0.907 22 C -0.133 4.133 23 N -0.393 5.393 24 Si 0.728 3.272 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.122 4.122 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.164 0.836 40 H 0.176 0.824 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.140 0.860 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.294 -13.552 -0.093 17.641 hybrid contribution 0.749 0.105 0.568 0.946 sum -10.545 -13.447 0.476 17.095 Atomic orbital electron populations 1.21745 0.94927 1.01417 1.02260 1.20518 0.96012 0.92899 1.02626 1.19843 0.99451 0.96053 0.93258 1.20948 1.00771 0.94866 0.97402 1.21174 0.97321 0.94593 0.98185 1.19825 0.99184 0.95380 0.93453 1.18310 0.83365 0.88530 0.96520 0.90207 1.21141 0.95515 0.98619 0.95970 1.21285 0.93667 0.95060 0.99714 1.21942 1.01238 1.00986 0.95606 1.22598 0.94300 0.97450 0.93205 1.67682 1.04086 1.07979 1.39843 1.22819 0.96784 0.93373 0.90752 1.48369 1.13313 1.11683 1.64075 1.21327 0.98666 0.88186 0.92638 1.22457 1.00702 1.03341 0.97243 1.18244 0.85790 0.80007 0.79500 1.90627 1.71255 1.33179 1.49892 1.21057 0.98824 0.96805 1.40737 0.90655 1.25733 0.98839 0.95146 0.93549 1.70032 1.35946 1.00169 1.33187 0.86384 0.82599 0.79092 0.79165 1.18664 1.20199 1.20245 1.21035 0.98961 0.94679 0.97497 1.20913 1.00815 0.94775 0.97336 0.92635 0.92596 0.92574 0.91184 0.91228 0.86334 0.85713 0.85611 0.85545 0.83628 0.82396 0.91690 0.91381 0.93756 0.89996 0.93011 0.92236 0.85957 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.78 16 2 C -0.08 -0.71 6.07 -27.88 -0.17 -0.88 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.50 16 4 C -0.12 -1.48 9.70 -39.58 -0.38 -1.87 16 5 C -0.09 -1.35 6.63 -39.58 -0.26 -1.62 16 6 C -0.08 -1.20 3.67 -104.63 -0.38 -1.58 16 7 C 0.24 4.53 2.44 -70.24 -0.17 4.36 16 8 H 0.08 1.62 7.83 -51.93 -0.41 1.22 16 9 C -0.11 -2.12 3.75 -104.48 -0.39 -2.51 16 10 C -0.07 -1.23 9.87 -39.28 -0.39 -1.61 16 11 C -0.18 -2.80 10.11 -39.44 -0.40 -3.20 16 12 C 0.08 1.38 11.18 -17.54 -0.20 1.18 16 13 N -0.49 -9.79 10.36 -13.25 -0.14 -9.93 16 14 C 0.12 2.47 9.03 -17.55 -0.16 2.31 16 15 N -0.64 -13.60 1.82 -170.41 -0.31 -13.91 16 16 C 0.12 2.09 4.97 -4.04 -0.02 2.07 16 17 C -0.18 -3.02 8.39 37.16 0.31 -2.71 16 18 C 0.56 15.06 6.63 -12.99 -0.09 14.97 16 19 O -0.57 -17.64 14.42 5.20 0.07 -17.56 16 20 C -0.54 -14.49 7.64 -35.63 -0.27 -14.76 16 21 H 0.08 1.86 5.56 -52.49 -0.29 1.57 16 22 C 0.09 2.38 5.50 -17.36 -0.10 2.28 16 23 N -0.76 -22.60 11.83 55.55 0.66 -21.94 16 24 Si 0.90 19.95 29.56 -169.99 -5.02 14.92 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 C -0.10 -1.39 9.67 -39.58 -0.38 -1.78 16 29 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.89 4.76 -52.49 -0.25 1.64 16 37 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 40 H 0.16 3.36 4.47 -52.49 -0.23 3.12 16 41 H 0.06 1.23 7.16 -51.93 -0.37 0.86 16 42 H 0.07 1.10 4.55 -51.93 -0.24 0.87 16 43 H 0.04 0.70 4.88 -51.93 -0.25 0.45 16 44 H 0.08 1.63 6.16 -51.93 -0.32 1.31 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 47 H 0.12 1.53 7.95 -52.49 -0.42 1.12 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -33.78 379.91 -9.58 -43.36 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.56 Total: 8.74 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -4.00 Total: -9.40 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.21 Total: -45.78 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.07 Total: -17.56 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.78 -9.58 -43.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170598992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.605 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds