Wall clock time and date at job start Tue Mar 31 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38747 * 119.79082 * 2 1 4 4 C 1.37844 * 120.68620 * 180.02562 * 3 2 1 5 5 C 1.38947 * 119.81818 * 359.96324 * 4 3 2 6 6 O 1.34805 * 133.49757 * 180.02562 * 5 4 3 7 7 C 1.34456 * 110.88855 * 180.02562 * 6 5 4 8 8 C 1.50701 * 124.92057 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47027 * 270.02255 * 8 7 6 10 10 C 1.46500 * 119.99576 * 90.00254 * 9 8 7 11 11 C 1.50705 * 109.47343 * 89.99945 * 10 9 8 12 12 C 1.34514 * 125.78689 * 89.99983 * 11 10 9 13 13 C 1.41380 * 106.83975 * 180.02562 * 12 11 10 14 14 C 1.34514 * 106.84232 * 359.97438 * 13 12 11 15 15 O 1.34298 * 125.79169 * 269.69524 * 11 10 9 16 16 C 1.34771 * 120.00418 * 270.00530 * 9 8 7 17 17 O 1.21685 * 120.00066 * 359.97438 * 16 9 8 18 18 C 1.46373 * 120.00124 * 180.02562 * 16 9 8 19 19 H 1.08001 * 119.99888 * 354.14414 * 18 16 9 20 20 C 1.40050 * 120.00026 * 174.15681 * 18 16 9 21 21 N 1.30670 * 120.00119 * 6.23222 * 20 18 16 22 22 Si 1.86799 * 119.99966 * 186.23133 * 20 18 16 23 23 H 1.48501 * 109.47203 * 94.98121 * 22 20 18 24 24 H 1.48506 * 109.46985 * 214.98047 * 22 20 18 25 25 H 1.48501 * 109.47205 * 334.97694 * 22 20 18 26 26 C 1.33991 * 110.15152 * 0.26850 * 7 6 5 27 27 C 1.40487 * 119.22078 * 0.03857 * 5 4 3 28 28 C 1.36733 * 119.79019 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46694 * 269.97898 * 1 2 3 30 30 H 1.09003 * 109.47133 * 29.97640 * 1 2 3 31 31 H 1.08995 * 109.46985 * 149.97817 * 1 2 3 32 32 H 1.08000 * 119.65611 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.09208 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.46741 * 150.03099 * 8 7 6 35 35 H 1.08999 * 109.47192 * 30.02340 * 8 7 6 36 36 H 1.08998 * 109.47828 * 329.99946 * 10 9 8 37 37 H 1.09000 * 109.47517 * 209.99978 * 10 9 8 38 38 H 1.08000 * 126.57855 * 359.96037 * 12 11 10 39 39 H 1.08004 * 126.58200 * 179.97438 * 13 12 11 40 40 H 1.07998 * 125.79191 * 179.97438 * 14 13 12 41 41 H 0.97001 * 120.00361 * 180.02562 * 21 20 18 42 42 H 1.08005 * 126.90411 * 179.71406 * 26 7 6 43 43 H 1.07998 * 120.14377 * 359.94856 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2041 0.0000 4 6 3.5747 1.2256 -0.0005 5 6 4.2843 0.0311 -0.0003 6 8 5.5990 -0.2672 -0.0002 7 6 5.7885 -1.5983 -0.0005 8 6 7.1335 -2.2782 0.0000 9 7 7.5703 -2.4976 -1.3811 10 6 8.3611 -1.4749 -2.0703 11 6 9.8274 -1.7289 -1.8326 12 6 10.6284 -2.4899 -2.5999 13 6 11.9144 -2.4513 -2.0137 14 6 11.8224 -1.6687 -0.9235 15 8 10.5574 -1.2293 -0.8221 16 6 7.2446 -3.6400 -2.0175 17 8 6.5881 -4.4897 -1.4449 18 6 7.6815 -3.8594 -3.3972 19 1 8.1825 -3.0694 -3.9370 20 6 7.4498 -5.0936 -4.0173 21 7 6.7380 -6.0062 -3.4106 22 14 8.1582 -5.4351 -5.7116 23 1 9.4530 -6.1487 -5.5722 24 1 7.2096 -6.2772 -6.4841 25 1 8.3748 -4.1512 -6.4256 26 6 4.6083 -2.2327 -0.0067 27 6 3.5805 -1.1848 -0.0003 28 6 2.1864 -1.1866 -0.0005 29 1 -0.3632 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6474 2.1342 0.0004 33 1 4.1015 2.1684 -0.0001 34 1 7.0558 -3.2368 0.5130 35 1 7.8588 -1.6482 0.5148 36 1 8.0960 -0.4901 -1.6858 37 1 8.1541 -1.5151 -3.1398 38 1 10.3436 -3.0279 -3.4920 39 1 12.8006 -2.9539 -2.3723 40 1 12.6298 -1.4309 -0.2468 41 1 6.5778 -6.8611 -3.8399 42 1 4.4459 -3.3004 -0.0128 43 1 1.6453 -2.1213 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170599110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:39 Heat of formation + Delta-G solvation = 11.928004 kcal Electronic energy + Delta-G solvation = -28740.599080 eV Core-core repulsion = 24719.222700 eV Total energy + Delta-G solvation = -4021.376380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11013 -42.01448 -38.25579 -37.75842 -34.42990 -32.88476 -32.50135 -32.37530 -32.08002 -30.68334 -29.03717 -27.33811 -26.53124 -25.66396 -24.50416 -22.11858 -21.30092 -21.19658 -20.74785 -20.22709 -19.28418 -17.20900 -17.08885 -16.65467 -16.03355 -15.99626 -15.65231 -15.34030 -15.13647 -14.51974 -14.31552 -14.20845 -13.93145 -13.66575 -13.59418 -13.05890 -12.67148 -12.58930 -12.37630 -12.23396 -12.18608 -12.14693 -11.78197 -11.70670 -11.51852 -11.35254 -11.25130 -11.20328 -11.03235 -10.68071 -10.34982 -10.28936 -9.81043 -9.42088 -8.94697 -8.24788 -8.10564 -7.96546 -7.63835 -7.60619 -6.31371 -4.75659 1.13156 1.51810 2.16224 2.72277 3.03963 3.07785 3.13400 3.16146 3.17886 3.46745 3.86074 4.01619 4.41558 4.52306 4.67407 4.87393 4.92042 5.16547 5.22308 5.36659 5.39818 5.44041 5.48416 5.51676 5.55232 5.60135 5.71085 5.73504 5.83303 5.92578 6.06892 6.09053 6.20905 6.22369 6.32411 6.38553 6.49399 6.51694 6.56632 6.65382 6.86152 6.90883 7.02431 7.25522 7.34005 7.57413 7.63488 7.92819 8.15953 8.90770 9.19138 10.41687 10.61225 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003711 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.605382 B = 7543.023899 C = 9452.860351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.112 4.112 3 C -0.103 4.103 4 C -0.104 4.104 5 C 0.043 3.957 6 O -0.195 6.195 7 C 0.030 3.970 8 C 0.197 3.803 9 N -0.628 5.628 10 C 0.205 3.795 11 C -0.020 4.020 12 C -0.188 4.188 13 C -0.215 4.215 14 C -0.060 4.060 15 O -0.181 6.181 16 C 0.558 3.442 17 O -0.566 6.566 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.090 3.910 21 N -0.762 5.762 22 Si 0.901 3.099 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.185 4.185 27 C -0.120 4.120 28 C -0.072 4.072 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.154 0.846 39 H 0.141 0.859 40 H 0.194 0.806 41 H 0.269 0.731 42 H 0.162 0.838 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 11.921 4.968 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.112 4.112 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.004 4.004 6 O -0.097 6.097 7 C -0.019 4.019 8 C 0.072 3.928 9 N -0.365 5.365 10 C 0.080 3.920 11 C -0.071 4.071 12 C -0.208 4.208 13 C -0.234 4.234 14 C -0.128 4.128 15 O -0.078 6.078 16 C 0.366 3.634 17 O -0.448 6.448 18 C -0.573 4.573 19 H 0.091 0.909 20 C -0.130 4.130 21 N -0.390 5.390 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.205 4.205 27 C -0.121 4.121 28 C -0.090 4.090 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.211 0.789 41 H 0.080 0.920 42 H 0.179 0.821 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.126 11.613 5.491 13.021 hybrid contribution 0.648 -0.498 -1.028 1.313 sum -1.478 11.115 4.463 12.068 Atomic orbital electron populations 1.20715 0.91023 1.02635 1.02033 1.19439 0.96104 0.92755 1.02883 1.20684 0.92459 0.97672 1.01310 1.19839 0.93047 0.94490 1.04915 1.19654 0.81817 0.95518 1.03444 1.83957 1.24081 1.25263 1.76361 1.23427 0.98910 0.79081 1.00471 1.19663 0.86791 0.99043 0.87320 1.48409 1.55585 1.20377 1.12100 1.19732 0.80639 0.91774 0.99854 1.23414 0.95227 0.99910 0.88574 1.21786 0.92445 1.02914 1.03610 1.21841 0.99105 1.04214 0.98287 1.23830 0.85427 1.02175 1.01324 1.83988 1.19918 1.59130 1.44718 1.18342 0.79484 0.78385 0.87229 1.90604 1.42690 1.43121 1.68364 1.20920 1.40510 0.99604 0.96262 0.90873 1.25683 0.93150 0.95690 0.98505 1.69998 1.27797 1.04644 1.36564 0.86444 0.79391 0.79274 0.82326 1.19637 1.20359 1.18653 1.22409 0.89855 0.99893 1.08391 1.20064 0.94412 0.93137 1.04518 1.20154 0.91585 0.97991 0.99271 0.91491 0.91717 0.91625 0.85309 0.85435 0.87118 0.90475 0.90999 0.86780 0.82881 0.84123 0.78943 0.91968 0.82068 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.00 36.01 0.36 -0.64 16 2 C -0.11 -1.43 5.85 -104.98 -0.61 -2.04 16 3 C -0.10 -1.25 9.66 -39.54 -0.38 -1.63 16 4 C -0.10 -1.45 10.07 -39.46 -0.40 -1.85 16 5 C 0.04 0.75 7.42 -38.47 -0.29 0.47 16 6 O -0.19 -3.60 10.58 3.90 0.04 -3.56 16 7 C 0.03 0.58 6.81 -35.80 -0.24 0.34 16 8 C 0.20 3.80 5.91 -5.19 -0.03 3.77 16 9 N -0.63 -13.63 2.44 -178.10 -0.43 -14.07 16 10 C 0.20 3.81 5.69 -5.19 -0.03 3.78 16 11 C -0.02 -0.36 6.90 -35.62 -0.25 -0.61 16 12 C -0.19 -3.43 10.45 -39.70 -0.41 -3.84 16 13 C -0.22 -3.36 10.91 -39.70 -0.43 -3.79 16 14 C -0.06 -0.86 12.09 29.42 0.36 -0.51 16 15 O -0.18 -3.09 10.65 5.72 0.06 -3.03 16 16 C 0.56 14.82 7.60 -12.99 -0.10 14.72 16 17 O -0.57 -16.96 14.62 5.20 0.08 -16.89 16 18 C -0.54 -14.03 8.22 -35.63 -0.29 -14.32 16 19 H 0.07 1.74 5.21 -52.49 -0.27 1.46 16 20 C 0.09 2.38 5.49 -17.37 -0.10 2.29 16 21 N -0.76 -21.74 11.85 55.55 0.66 -21.08 16 22 Si 0.90 19.24 29.56 -169.99 -5.03 14.22 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 26 C -0.19 -3.67 11.01 -37.62 -0.41 -4.08 16 27 C -0.12 -2.16 6.40 -105.16 -0.67 -2.83 16 28 C -0.07 -1.09 9.68 -39.69 -0.38 -1.48 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 2.25 7.42 -51.93 -0.39 1.86 16 35 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 37 H 0.11 2.13 6.03 -51.93 -0.31 1.81 16 38 H 0.15 2.90 7.13 -52.49 -0.37 2.52 16 39 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 42 H 0.16 3.35 8.06 -52.48 -0.42 2.93 16 43 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -33.12 374.04 -8.42 -41.54 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.12 Total: 9.48 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -4.32 Total: -12.25 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.22 Total: -35.15 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.48 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.12 -8.42 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170599110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.469 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds