Wall clock time and date at job start Tue Mar 31 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21260 * 119.99747 * 2 1 4 4 C 1.47159 * 120.00324 * 179.97438 * 2 1 3 5 5 C 1.39875 * 120.17132 * 274.29955 * 4 2 1 6 6 C 1.50699 * 120.08648 * 0.02562 * 5 4 2 7 7 C 1.37862 * 119.82442 * 179.97438 * 5 4 2 8 8 C 1.38424 * 120.17356 * 359.74437 * 7 5 4 9 9 C 1.50699 * 119.82850 * 180.27476 * 8 7 5 10 10 C 1.38384 * 120.34858 * 0.51499 * 8 7 5 11 11 C 1.50696 * 119.91392 * 179.76315 * 10 8 7 12 12 S 1.81399 * 109.47077 * 269.72092 * 11 10 8 13 13 O 1.42103 * 108.58013 * 294.49129 * 12 11 10 14 14 O 1.42102 * 108.57657 * 65.51668 * 12 11 10 15 15 C 1.81400 * 101.92502 * 179.97438 * 12 11 10 16 16 C 1.52998 * 109.47589 * 180.02562 * 15 12 11 17 17 C 1.50699 * 109.47155 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99851 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00166 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46974 * 90.00158 * 21 19 17 23 23 H 1.48497 * 109.47153 * 210.00483 * 21 19 17 24 24 H 1.48496 * 109.47088 * 330.00513 * 21 19 17 25 25 C 1.37908 * 120.17110 * 359.48609 * 10 8 7 26 26 C 1.50698 * 120.09022 * 180.27859 * 25 10 8 27 27 H 1.09007 * 109.46702 * 184.99418 * 1 2 3 28 28 H 1.08999 * 109.47266 * 304.99052 * 1 2 3 29 29 H 1.08995 * 109.47471 * 64.99621 * 1 2 3 30 30 H 1.09000 * 109.47640 * 84.41663 * 6 5 4 31 31 H 1.09008 * 109.47014 * 204.41854 * 6 5 4 32 32 H 1.09000 * 109.47094 * 324.41303 * 6 5 4 33 33 H 1.08001 * 119.91638 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47538 * 270.24000 * 9 8 7 35 35 H 1.09007 * 109.47217 * 30.23993 * 9 8 7 36 36 H 1.09002 * 109.47183 * 150.23824 * 9 8 7 37 37 H 1.09002 * 109.46892 * 149.72539 * 11 10 8 38 38 H 1.08999 * 109.47143 * 29.72029 * 11 10 8 39 39 H 1.09001 * 109.46827 * 300.00598 * 15 12 11 40 40 H 1.09008 * 109.46463 * 59.99904 * 15 12 11 41 41 H 1.09000 * 109.47016 * 300.00380 * 16 15 12 42 42 H 1.08998 * 109.46891 * 60.00164 * 16 15 12 43 43 H 0.97001 * 120.00562 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.47147 * 85.55419 * 26 25 10 45 45 H 1.08997 * 109.47150 * 205.55585 * 26 25 10 46 46 H 1.08998 * 109.46680 * 325.55569 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 0.0006 5 6 2.5159 -1.9280 1.2067 6 6 2.0566 -1.3293 2.5112 7 6 3.2054 -3.1218 1.1989 8 6 3.6225 -3.6765 0.0012 9 6 4.3702 -4.9849 0.0013 10 6 3.3610 -3.0333 -1.1959 11 6 3.8243 -3.6433 -2.4936 12 16 5.4875 -3.0357 -2.8875 13 8 5.4122 -1.6385 -3.1351 14 8 6.3908 -3.5181 -1.9023 15 6 5.8350 -3.8830 -4.4534 16 6 7.2263 -3.4857 -4.9506 17 6 7.5146 -4.1891 -6.2518 18 1 6.7789 -4.8528 -6.6814 19 6 8.7172 -3.9845 -6.8943 20 7 9.6129 -3.1759 -6.3714 21 14 9.0749 -4.8570 -8.5069 22 1 8.6108 -4.0151 -9.6387 23 1 10.5363 -5.0901 -8.6300 24 1 8.3620 -6.1593 -8.5338 25 6 2.6724 -1.8385 -1.2047 26 6 2.3831 -1.1429 -2.5099 27 1 -0.3633 -1.0239 0.0895 28 1 -0.3634 0.5893 0.8419 29 1 -0.3634 0.4343 -0.9313 30 1 1.0226 -1.6183 2.6996 31 1 2.6890 -1.6937 3.3208 32 1 2.1261 -0.2429 2.4568 33 1 3.4166 -3.6279 2.1293 34 1 5.4401 -4.7921 0.0800 35 1 4.0464 -5.5884 0.8493 36 1 4.1649 -5.5208 -0.9255 37 1 3.1369 -3.3641 -3.2922 38 1 3.8474 -4.7288 -2.3970 39 1 5.7990 -4.9614 -4.2988 40 1 5.0885 -3.5971 -5.1945 41 1 7.2626 -2.4073 -5.1051 42 1 7.9724 -3.7719 -4.2093 43 1 10.4591 -3.0322 -6.8232 44 1 1.4654 -1.5442 -2.9399 45 1 2.2644 -0.0738 -2.3333 46 1 3.2102 -1.3075 -3.2004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190895087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:49 Heat of formation + Delta-G solvation = -105.664095 kcal Electronic energy + Delta-G solvation = -27529.061956 eV Core-core repulsion = 23703.456262 eV Total energy + Delta-G solvation = -3825.605694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 5.53 seconds Orbital eigenvalues (eV) -40.72575 -38.85103 -36.51688 -35.53728 -34.82269 -33.89103 -33.85242 -31.20368 -30.54904 -29.99578 -28.09898 -27.21840 -25.93649 -25.14077 -22.13492 -21.62055 -20.68250 -19.37799 -18.39420 -17.09499 -17.00969 -16.75494 -15.99845 -15.56571 -15.46839 -15.19867 -14.77082 -14.63430 -14.53786 -14.22613 -13.90708 -13.53643 -13.46026 -13.33743 -13.25046 -13.09581 -12.82207 -12.67434 -12.50924 -12.40442 -12.31454 -11.85548 -11.77423 -11.59930 -11.55464 -11.50510 -11.40402 -11.18309 -11.08739 -10.94716 -10.73703 -10.38959 -10.36406 -9.95200 -9.71545 -9.20321 -8.73873 -8.53848 -8.50170 -6.12031 -4.18264 0.25507 0.94496 1.16484 1.62314 3.21452 3.25767 3.31620 3.32301 3.34401 3.73561 3.96325 4.23502 4.34547 4.42392 4.47147 4.54035 4.68965 4.80499 4.85954 5.00788 5.10323 5.11422 5.17115 5.22864 5.24988 5.26449 5.33508 5.38954 5.46252 5.54027 5.55743 5.59927 5.64826 5.66133 5.70225 5.80834 6.05563 6.12139 6.17717 6.20021 6.36545 6.45670 6.69366 7.17517 7.33475 7.38868 7.80283 8.16796 8.85316 9.46371 10.98833 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.002798 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.894437 B =10005.546345 C =10643.090295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.410 3.590 3 O -0.444 6.444 4 C -0.167 4.167 5 C -0.044 4.044 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.042 4.042 9 C -0.134 4.134 10 C -0.091 4.091 11 C -0.588 4.588 12 S 2.393 3.607 13 O -0.936 6.936 14 O -0.936 6.936 15 C -0.574 4.574 16 C 0.029 3.971 17 C -0.522 4.522 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.025 4.025 26 C -0.141 4.141 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.077 -1.203 15.171 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.285 3.715 3 O -0.316 6.316 4 C -0.167 4.167 5 C -0.045 4.045 6 C -0.178 4.178 7 C -0.145 4.145 8 C -0.043 4.043 9 C -0.190 4.190 10 C -0.092 4.092 11 C -0.711 4.711 12 S 2.577 3.423 13 O -0.933 6.933 14 O -0.933 6.933 15 C -0.707 4.707 16 C -0.009 4.009 17 C -0.562 4.562 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.026 4.026 26 C -0.197 4.197 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.078 0.030 15.656 25.460 hybrid contribution -0.342 -1.159 -1.366 1.824 sum -20.420 -1.130 14.289 24.949 Atomic orbital electron populations 1.22270 0.93401 1.04871 1.04999 1.22493 0.91748 0.87574 0.69731 1.90604 1.72319 1.34084 1.34628 1.20114 1.04902 0.98152 0.93575 1.19839 0.96641 0.94253 0.93740 1.20894 1.01896 1.01028 0.94002 1.20780 1.00301 0.95808 0.97654 1.19969 0.95703 0.96528 0.92112 1.21125 1.01862 0.93093 1.02961 1.18541 1.02646 0.95623 0.92379 1.29635 1.26009 1.12097 1.03398 1.09124 0.76609 0.77390 0.79169 1.93537 1.85473 1.28434 1.85820 1.93522 1.59336 1.82156 1.58322 1.30263 1.11088 1.12388 1.16932 1.18981 0.85685 0.98342 0.97932 1.21012 1.01751 1.27707 1.05714 0.92025 1.25070 0.96080 0.95260 0.98056 1.69959 1.07533 1.35959 1.39225 0.86476 0.77617 0.79885 0.83341 1.20443 1.20977 1.19754 1.19696 0.94827 0.93515 0.94523 1.21167 1.03490 1.00573 0.94515 0.89810 0.88803 0.88461 0.90488 0.90627 0.91433 0.85003 0.88391 0.91013 0.91065 0.84234 0.83905 0.86132 0.86168 0.94640 0.94622 0.92496 0.90241 0.90963 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 10.32 36.01 0.37 -0.99 16 2 C 0.41 4.71 3.72 -30.69 -0.11 4.60 16 3 O -0.44 -6.74 17.72 5.57 0.10 -6.64 16 4 C -0.17 -2.08 5.46 -105.07 -0.57 -2.66 16 5 C -0.04 -0.49 5.92 -104.15 -0.62 -1.10 16 6 C -0.12 -0.96 9.53 36.01 0.34 -0.62 16 7 C -0.13 -1.40 9.31 -39.65 -0.37 -1.77 16 8 C -0.04 -0.52 5.89 -104.50 -0.62 -1.14 16 9 C -0.13 -1.44 9.31 36.00 0.34 -1.10 16 10 C -0.09 -1.22 5.13 -104.69 -0.54 -1.76 16 11 C -0.59 -7.13 4.82 36.00 0.17 -6.96 16 12 S 2.39 41.89 4.69 -107.50 -0.50 41.39 16 13 O -0.94 -19.35 16.18 -57.83 -0.94 -20.29 16 14 O -0.94 -18.82 17.11 -57.83 -0.99 -19.81 16 15 C -0.57 -10.58 5.74 37.16 0.21 -10.37 16 16 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 17 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.02 -0.33 5.92 -104.15 -0.62 -0.95 16 26 C -0.14 -1.75 8.74 36.00 0.31 -1.44 16 27 H 0.08 0.45 7.99 -51.93 -0.42 0.04 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.50 8.05 -51.92 -0.42 0.09 16 32 H 0.07 0.59 7.31 -51.93 -0.38 0.21 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.10 1.22 7.44 -51.93 -0.39 0.83 16 35 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.07 0.67 5.92 -51.93 -0.31 0.36 16 37 H 0.14 1.31 6.78 -51.92 -0.35 0.96 16 38 H 0.14 1.31 5.91 -51.92 -0.31 1.01 16 39 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 40 H 0.12 1.91 8.14 -51.92 -0.42 1.48 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.92 6.83 -51.93 -0.35 0.56 16 46 H 0.09 1.27 4.93 -51.93 -0.26 1.02 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -37.35 387.70 -9.96 -47.30 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.94 Total: 0.74 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: -2.24 Total: -38.78 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.83 Total: -46.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 41.89 SS G_CDS: -0.50 Total: 41.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.35 -9.96 -47.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190895087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.362 kcal (2) G-P(sol) polarization free energy of solvation -37.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.53 seconds