Wall clock time and date at job start Tue Mar 31 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21260 * 119.99747 * 2 1 4 4 C 1.47159 * 120.00324 * 179.97438 * 2 1 3 5 5 C 1.39875 * 120.17132 * 274.29955 * 4 2 1 6 6 C 1.50699 * 120.08648 * 0.02562 * 5 4 2 7 7 C 1.37862 * 119.82442 * 179.97438 * 5 4 2 8 8 C 1.38424 * 120.17356 * 359.74437 * 7 5 4 9 9 C 1.50699 * 119.82850 * 180.27476 * 8 7 5 10 10 C 1.38384 * 120.34858 * 0.51499 * 8 7 5 11 11 C 1.50696 * 119.91392 * 179.76315 * 10 8 7 12 12 S 1.81399 * 109.47077 * 269.72092 * 11 10 8 13 13 O 1.42103 * 108.58013 * 294.49129 * 12 11 10 14 14 O 1.42102 * 108.57657 * 65.51668 * 12 11 10 15 15 C 1.81400 * 101.92502 * 179.97438 * 12 11 10 16 16 C 1.52998 * 109.47589 * 180.02562 * 15 12 11 17 17 C 1.50699 * 109.47155 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99851 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00166 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46974 * 90.00158 * 21 19 17 23 23 H 1.48497 * 109.47153 * 210.00483 * 21 19 17 24 24 H 1.48496 * 109.47088 * 330.00513 * 21 19 17 25 25 C 1.37908 * 120.17110 * 359.48609 * 10 8 7 26 26 C 1.50698 * 120.09022 * 180.27859 * 25 10 8 27 27 H 1.09007 * 109.46702 * 184.99418 * 1 2 3 28 28 H 1.08999 * 109.47266 * 304.99052 * 1 2 3 29 29 H 1.08995 * 109.47471 * 64.99621 * 1 2 3 30 30 H 1.09000 * 109.47640 * 84.41663 * 6 5 4 31 31 H 1.09008 * 109.47014 * 204.41854 * 6 5 4 32 32 H 1.09000 * 109.47094 * 324.41303 * 6 5 4 33 33 H 1.08001 * 119.91638 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47538 * 270.24000 * 9 8 7 35 35 H 1.09007 * 109.47217 * 30.23993 * 9 8 7 36 36 H 1.09002 * 109.47183 * 150.23824 * 9 8 7 37 37 H 1.09002 * 109.46892 * 149.72539 * 11 10 8 38 38 H 1.08999 * 109.47143 * 29.72029 * 11 10 8 39 39 H 1.09001 * 109.46827 * 300.00598 * 15 12 11 40 40 H 1.09008 * 109.46463 * 59.99904 * 15 12 11 41 41 H 1.09000 * 109.47016 * 300.00380 * 16 15 12 42 42 H 1.08998 * 109.46891 * 60.00164 * 16 15 12 43 43 H 0.97001 * 120.00562 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.47147 * 85.55419 * 26 25 10 45 45 H 1.08997 * 109.47150 * 205.55585 * 26 25 10 46 46 H 1.08998 * 109.46680 * 325.55569 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 0.0006 5 6 2.5159 -1.9280 1.2067 6 6 2.0566 -1.3293 2.5112 7 6 3.2054 -3.1218 1.1989 8 6 3.6225 -3.6765 0.0012 9 6 4.3702 -4.9849 0.0013 10 6 3.3610 -3.0333 -1.1959 11 6 3.8243 -3.6433 -2.4936 12 16 5.4875 -3.0357 -2.8875 13 8 5.4122 -1.6385 -3.1351 14 8 6.3908 -3.5181 -1.9023 15 6 5.8350 -3.8830 -4.4534 16 6 7.2263 -3.4857 -4.9506 17 6 7.5146 -4.1891 -6.2518 18 1 6.7789 -4.8528 -6.6814 19 6 8.7172 -3.9845 -6.8943 20 7 9.6129 -3.1759 -6.3714 21 14 9.0749 -4.8570 -8.5069 22 1 8.6108 -4.0151 -9.6387 23 1 10.5363 -5.0901 -8.6300 24 1 8.3620 -6.1593 -8.5338 25 6 2.6724 -1.8385 -1.2047 26 6 2.3831 -1.1429 -2.5099 27 1 -0.3633 -1.0239 0.0895 28 1 -0.3634 0.5893 0.8419 29 1 -0.3634 0.4343 -0.9313 30 1 1.0226 -1.6183 2.6996 31 1 2.6890 -1.6937 3.3208 32 1 2.1261 -0.2429 2.4568 33 1 3.4166 -3.6279 2.1293 34 1 5.4401 -4.7921 0.0800 35 1 4.0464 -5.5884 0.8493 36 1 4.1649 -5.5208 -0.9255 37 1 3.1369 -3.3641 -3.2922 38 1 3.8474 -4.7288 -2.3970 39 1 5.7990 -4.9614 -4.2988 40 1 5.0885 -3.5971 -5.1945 41 1 7.2626 -2.4073 -5.1051 42 1 7.9724 -3.7719 -4.2093 43 1 10.4591 -3.0322 -6.8232 44 1 1.4654 -1.5442 -2.9399 45 1 2.2644 -0.0738 -2.3333 46 1 3.2102 -1.3075 -3.2004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190895087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:43 Heat of formation + Delta-G solvation = -130.775626 kcal Electronic energy + Delta-G solvation = -27530.150873 eV Core-core repulsion = 23703.456262 eV Total energy + Delta-G solvation = -3826.694611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.60955 -39.78474 -37.99735 -37.00359 -35.89118 -35.68821 -34.74821 -33.13589 -31.23432 -30.89837 -28.93370 -28.01663 -27.68970 -26.26970 -23.47917 -22.96587 -21.58016 -20.33987 -19.75736 -18.87074 -17.99872 -17.77488 -17.47774 -16.92343 -16.70019 -16.45594 -16.28195 -15.61295 -15.51933 -15.15177 -15.13792 -14.74517 -14.46581 -14.19983 -14.18628 -14.16991 -13.92842 -13.72560 -13.62959 -13.21143 -13.13835 -13.05739 -13.02902 -12.97083 -12.91414 -12.75662 -12.61494 -12.54437 -12.37262 -12.22757 -12.09513 -12.05600 -11.87417 -11.63716 -11.01603 -10.82734 -10.65354 -9.62313 -9.48730 -8.25966 -6.41078 -1.08057 0.04217 0.25350 0.76685 1.40393 1.42901 1.53979 1.90434 2.37100 2.41008 2.73144 2.96784 3.05213 3.07575 3.36601 3.60874 3.72242 3.83322 3.84582 4.05096 4.12521 4.16317 4.28060 4.36160 4.38109 4.46555 4.57492 4.59958 4.60354 4.64177 4.72478 4.74427 4.78988 4.81727 4.89446 5.00694 5.09173 5.20298 5.26723 5.28593 5.28888 5.30227 5.36548 5.47628 5.68371 5.84664 6.05022 6.34687 6.74008 7.29513 8.86510 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.002798 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.894437 B =10005.546345 C =10643.090295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.413 3.587 3 O -0.495 6.495 4 C -0.190 4.190 5 C -0.044 4.044 6 C -0.121 4.121 7 C -0.134 4.134 8 C -0.051 4.051 9 C -0.139 4.139 10 C -0.119 4.119 11 C -0.548 4.548 12 S 2.384 3.616 13 O -0.982 6.982 14 O -0.975 6.975 15 C -0.577 4.577 16 C 0.021 3.979 17 C -0.539 4.539 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.937 5.937 21 Si 0.976 3.024 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.253 1.253 25 C -0.040 4.040 26 C -0.146 4.146 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.151 0.849 40 H 0.148 0.852 41 H -0.001 1.001 42 H 0.002 0.998 43 H 0.267 0.733 44 H 0.116 0.884 45 H 0.059 0.941 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.615 -3.653 15.524 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.292 3.708 3 O -0.371 6.371 4 C -0.191 4.191 5 C -0.044 4.044 6 C -0.177 4.177 7 C -0.152 4.152 8 C -0.052 4.052 9 C -0.195 4.195 10 C -0.121 4.121 11 C -0.678 4.678 12 S 2.575 3.425 13 O -0.979 6.979 14 O -0.972 6.972 15 C -0.708 4.708 16 C -0.017 4.017 17 C -0.578 4.578 18 H 0.099 0.901 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.799 3.201 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.177 1.177 25 C -0.041 4.041 26 C -0.202 4.202 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.177 0.823 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.078 0.922 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.566 -2.428 15.971 28.571 hybrid contribution 0.645 -0.374 -1.302 1.501 sum -22.921 -2.803 14.668 27.357 Atomic orbital electron populations 1.22311 0.89474 1.06712 1.06313 1.23121 0.93772 0.86373 0.67556 1.90592 1.73673 1.35455 1.37342 1.20453 1.05750 0.98861 0.94012 1.20270 0.95550 0.94095 0.94523 1.20983 1.03859 1.00115 0.92770 1.21169 0.99684 0.95888 0.98415 1.20305 0.95398 0.97167 0.92321 1.21214 1.00242 0.92949 1.05122 1.18720 1.03964 0.96383 0.93033 1.29250 1.20111 1.14016 1.04408 1.08977 0.78961 0.76469 0.78101 1.93482 1.87097 1.31234 1.86062 1.93470 1.62812 1.82264 1.58645 1.30149 1.07262 1.14552 1.18851 1.18793 0.89522 0.96128 0.97246 1.21580 1.02241 1.27658 1.06340 0.90066 1.26194 0.95986 0.96030 1.02360 1.70130 1.08210 1.38011 1.41357 0.85281 0.77416 0.79263 0.78110 1.19589 1.20972 1.17694 1.19927 0.95203 0.93772 0.95209 1.21233 1.04599 1.00117 0.94226 0.87771 0.87053 0.87226 0.87650 0.89175 0.92567 0.82260 0.90630 0.88187 0.89632 0.80819 0.80138 0.83080 0.83364 0.98248 0.97971 0.92461 0.86589 0.92174 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 10.32 71.24 0.74 -1.40 16 2 C 0.41 9.17 3.72 28.03 0.10 9.27 16 3 O -0.49 -15.39 17.72 -2.97 -0.05 -15.44 16 4 C -0.19 -4.53 5.46 -20.15 -0.11 -4.64 16 5 C -0.04 -0.88 5.92 -19.56 -0.12 -0.99 16 6 C -0.12 -1.61 9.53 71.24 0.68 -0.93 16 7 C -0.13 -2.62 9.31 22.22 0.21 -2.41 16 8 C -0.05 -1.15 5.89 -19.79 -0.12 -1.27 16 9 C -0.14 -2.65 9.31 71.24 0.66 -1.99 16 10 C -0.12 -2.99 5.13 -19.91 -0.10 -3.09 16 11 C -0.55 -11.94 4.82 71.23 0.34 -11.60 16 12 S 2.38 85.02 4.69 -56.49 -0.27 84.75 16 13 O -0.98 -42.88 16.18 -127.37 -2.06 -44.94 16 14 O -0.97 -40.85 17.11 -127.37 -2.18 -43.03 16 15 C -0.58 -21.19 5.74 71.98 0.41 -20.78 16 16 C 0.02 1.15 4.98 29.85 0.15 1.30 16 17 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 18 H 0.08 4.08 7.74 -2.91 -0.02 4.06 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 21 Si 0.98 43.44 29.54 68.60 2.03 45.46 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 25 C -0.04 -1.02 5.92 -19.56 -0.12 -1.14 16 26 C -0.15 -3.49 8.74 71.24 0.62 -2.86 16 27 H 0.10 0.74 7.99 -2.38 -0.02 0.72 16 28 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.94 8.05 -2.38 -0.02 0.92 16 32 H 0.06 0.90 7.31 -2.39 -0.02 0.88 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.08 1.83 7.44 -2.39 -0.02 1.81 16 35 H 0.10 1.29 8.08 -2.38 -0.02 1.27 16 36 H 0.09 1.32 5.92 -2.39 -0.01 1.31 16 37 H 0.17 2.63 6.78 -2.39 -0.02 2.61 16 38 H 0.18 2.56 5.91 -2.39 -0.01 2.55 16 39 H 0.15 4.50 8.14 -2.39 -0.02 4.48 16 40 H 0.15 4.50 8.14 -2.39 -0.02 4.48 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.56 6.83 -2.39 -0.02 1.54 16 46 H 0.08 2.10 4.93 -2.39 -0.01 2.09 16 Total: -1.00 -88.89 387.70 2.79 -86.11 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.98 Total: 17.63 kcal Atomic # 6 Polarization: -76.41 SS G_CDS: 4.05 Total: -72.36 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.28 Total: -58.18 kcal Atomic # 8 Polarization: -99.12 SS G_CDS: -4.29 Total: -103.42 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 85.02 SS G_CDS: -0.27 Total: 84.75 kcal Total: -88.89 2.79 -86.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190895087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.671 kcal (2) G-P(sol) polarization free energy of solvation -88.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds