Wall clock time and date at job start Tue Mar 31 2020 05:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00061 * 2 1 4 4 H 1.48494 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46814 * 299.99759 * 3 2 1 6 6 H 1.48498 * 109.47490 * 59.99584 * 3 2 1 7 7 C 1.37878 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47010 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47297 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.58037 * 65.51181 * 11 10 9 13 13 O 1.42102 * 108.57938 * 294.48392 * 11 10 9 14 14 C 1.81400 * 101.92212 * 179.97438 * 11 10 9 15 15 C 1.50698 * 109.47092 * 179.97438 * 14 11 10 16 16 C 1.33859 * 122.07843 * 90.00495 * 15 14 11 17 17 S 1.76262 * 108.19267 * 179.97438 * 16 15 14 18 18 C 1.76175 * 89.83067 * 359.97438 * 17 16 15 19 19 C 1.47829 * 125.47126 * 179.97438 * 18 17 16 20 20 C 1.39530 * 119.74651 * 0.02672 * 19 18 17 21 21 C 1.38359 * 119.05611 * 179.97438 * 20 19 18 22 22 C 1.38818 * 118.52433 * 0.02562 * 21 20 19 23 23 C 1.38287 * 119.40021 * 0.27745 * 22 21 20 24 24 N 1.31726 * 120.91594 * 359.41824 * 23 22 21 25 25 N 1.30237 * 109.05800 * 0.22876 * 18 17 16 26 26 H 0.96998 * 120.00323 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47409 * 60.00103 * 9 7 2 28 28 H 1.08998 * 109.47425 * 299.99395 * 9 7 2 29 29 H 1.09002 * 109.47239 * 59.99666 * 10 9 7 30 30 H 1.09006 * 109.47195 * 299.99724 * 10 9 7 31 31 H 1.09009 * 109.47047 * 60.00207 * 14 11 10 32 32 H 1.08996 * 109.47402 * 299.99900 * 14 11 10 33 33 H 1.07995 * 125.90444 * 0.02562 * 16 15 14 34 34 H 1.08000 * 120.47345 * 359.97438 * 20 19 18 35 35 H 1.07994 * 120.74167 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.29626 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.54318 * 179.70439 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6279 -5.3464 -1.2242 13 8 0.6289 -5.3457 1.2274 14 6 2.6880 -6.4450 0.0004 15 6 2.1125 -7.8378 0.0015 16 6 1.8400 -8.4953 -1.1321 17 16 1.1876 -10.0768 -0.7078 18 6 1.3536 -9.6810 1.0009 19 6 0.9886 -10.5675 2.1261 20 6 0.4650 -11.8347 1.8675 21 6 0.1288 -12.6529 2.9314 22 6 0.3262 -12.1782 4.2209 23 6 0.8436 -10.9091 4.4053 24 7 1.1613 -10.1515 3.3756 25 7 1.8443 -8.4799 1.1135 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8895 31 1 3.3023 -6.3054 0.8900 32 1 3.3010 -6.3055 -0.8900 33 1 1.9940 -8.1217 -2.1336 34 1 0.3241 -12.1722 0.8512 35 1 -0.2781 -13.6389 2.7625 36 1 0.0733 -12.7927 5.0723 37 1 0.9936 -10.5356 5.4076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190923877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:50 Heat of formation + Delta-G solvation = -19.495588 kcal Electronic energy + Delta-G solvation = -23046.035470 eV Core-core repulsion = 19427.545756 eV Total energy + Delta-G solvation = -3618.489714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.055 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38193 -40.57722 -37.99613 -37.03858 -35.87814 -34.28519 -33.43994 -33.13660 -31.95060 -29.26281 -27.59079 -26.73353 -24.58858 -23.81160 -23.07445 -20.63602 -19.92340 -19.39060 -18.86614 -17.95910 -17.56535 -17.23639 -17.07528 -16.93512 -16.71037 -16.46906 -15.95017 -15.63387 -15.18800 -14.82970 -14.59830 -14.44668 -14.36523 -14.10047 -13.90845 -13.72385 -13.12706 -13.05338 -12.96617 -12.93443 -12.74965 -12.62866 -12.24800 -12.23225 -12.05146 -11.68793 -11.14404 -10.98094 -10.90161 -10.82756 -10.65739 -10.49281 -10.37081 -9.43479 -8.25708 -6.40394 -1.16120 -0.90576 0.01376 0.20769 0.37650 0.37985 1.40789 1.42247 1.55615 1.61142 1.88169 2.37800 2.50823 2.78579 2.84273 3.05949 3.08056 3.26939 3.61719 3.78884 3.93777 4.03943 4.04950 4.05669 4.13113 4.15556 4.30330 4.39216 4.52793 4.68939 4.78700 4.82556 5.09966 5.16456 5.29304 5.29582 5.65507 5.69153 6.05398 6.47891 6.74659 6.96034 7.29862 8.87128 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.002400 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.881852 B =11666.088881 C =12398.419888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.009 4.009 3 Si 0.978 3.022 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.020 3.980 10 C -0.571 4.571 11 S 2.395 3.605 12 O -0.975 6.975 13 O -0.985 6.985 14 C -0.517 4.517 15 C 0.034 3.966 16 C -0.226 4.226 17 S 0.195 5.805 18 C 0.079 3.921 19 C 0.153 3.847 20 C -0.148 4.148 21 C -0.065 4.065 22 C -0.147 4.147 23 C 0.086 3.914 24 N -0.495 5.495 25 N -0.461 5.461 26 H 0.267 0.733 27 H 0.006 0.994 28 H -0.001 1.001 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.197 0.803 33 H 0.221 0.779 34 H 0.158 0.842 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -30.955 1.518 31.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.801 3.199 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.099 0.901 9 C -0.019 4.019 10 C -0.702 4.702 11 S 2.585 3.415 12 O -0.972 6.972 13 O -0.983 6.983 14 C -0.649 4.649 15 C -0.100 4.100 16 C -0.368 4.368 17 S 0.451 5.549 18 C -0.197 4.197 19 C 0.015 3.985 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.167 4.167 23 C -0.073 4.073 24 N -0.206 5.206 25 N -0.176 5.176 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.017 0.983 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.187 0.813 32 H 0.215 0.785 33 H 0.238 0.762 34 H 0.175 0.825 35 H 0.201 0.799 36 H 0.197 0.803 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.078 -30.826 1.564 31.280 hybrid contribution 0.706 1.571 0.031 1.722 sum 5.783 -29.255 1.595 29.864 Atomic orbital electron populations 1.70138 1.08259 1.28245 1.51068 1.26207 0.95889 1.04168 0.94432 0.85206 0.79244 0.77691 0.77732 1.17560 1.20277 1.20555 1.21602 0.94191 0.90589 1.51246 0.90058 1.18829 0.93727 0.93186 0.96138 1.30093 1.12332 1.14650 1.13150 1.08588 0.79560 0.79388 0.73977 1.93476 1.70836 1.86541 1.46323 1.93503 1.71306 1.86403 1.47049 1.28913 1.17242 1.02546 1.16195 1.19256 1.05458 0.97597 0.87648 1.27670 1.05898 0.98181 1.05048 1.84284 1.57855 1.13509 0.99259 1.25907 1.03456 0.93629 0.96724 1.18770 0.99256 0.91587 0.88900 1.22261 0.99390 0.92591 1.02783 1.22040 0.94888 1.00943 0.91210 1.22779 0.97644 0.96532 0.99776 1.23353 0.94404 0.91726 0.97797 1.67624 1.16101 1.37418 0.99423 1.66243 1.13236 1.06754 1.31331 0.92452 0.97601 0.98261 0.83500 0.82474 0.81347 0.78548 0.76208 0.82467 0.79850 0.80332 0.80513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.88 13.29 21.45 0.28 -58.60 16 2 C -0.01 -0.53 5.46 84.65 0.46 -0.06 16 3 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 4 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 8 H 0.08 4.17 7.74 -2.91 -0.02 4.15 16 9 C 0.02 1.07 4.98 29.85 0.15 1.22 16 10 C -0.57 -21.69 5.74 71.98 0.41 -21.27 16 11 S 2.40 90.21 4.70 -56.49 -0.27 89.95 16 12 O -0.97 -41.58 18.10 -127.37 -2.30 -43.89 16 13 O -0.99 -47.21 18.10 -127.37 -2.31 -49.51 16 14 C -0.52 -12.83 6.20 71.24 0.44 -12.39 16 15 C 0.03 1.00 5.95 41.66 0.25 1.24 16 16 C -0.23 -5.11 11.09 66.82 0.74 -4.36 16 17 S 0.20 3.73 22.37 -56.49 -1.26 2.47 16 18 C 0.08 2.20 7.42 87.47 0.65 2.85 16 19 C 0.15 3.84 6.75 41.85 0.28 4.12 16 20 C -0.15 -2.24 9.64 22.61 0.22 -2.03 16 21 C -0.07 -0.61 10.16 22.44 0.23 -0.38 16 22 C -0.15 -1.48 10.11 22.42 0.23 -1.26 16 23 C 0.09 1.55 11.17 84.72 0.95 2.49 16 24 N -0.50 -13.75 10.26 -185.07 -1.90 -15.65 16 25 N -0.46 -15.48 10.48 -177.82 -1.86 -17.34 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.15 4.79 8.14 -2.39 -0.02 4.77 16 30 H 0.16 4.74 8.14 -2.39 -0.02 4.72 16 31 H 0.17 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.20 2.77 8.11 -2.39 -0.02 2.75 16 33 H 0.22 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.16 1.55 7.29 -2.91 -0.02 1.53 16 35 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 36 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 37 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -95.38 356.32 -1.26 -96.63 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.10 Total: 9.82 kcal Atomic # 6 Polarization: -65.24 SS G_CDS: 5.24 Total: -60.00 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -3.48 Total: -91.59 kcal Atomic # 8 Polarization: -88.79 SS G_CDS: -4.61 Total: -93.40 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 93.94 SS G_CDS: -1.53 Total: 92.41 kcal Total: -95.38 -1.26 -96.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190923877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.139 kcal (2) G-P(sol) polarization free energy of solvation -95.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds