Wall clock time and date at job start Tue Mar 31 2020 04:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09007 * 109.49422 * 2 1 4 4 C 1.53246 * 109.49533 * 239.91811 * 2 1 3 5 5 N 1.47078 * 108.52191 * 186.20983 * 4 2 1 6 6 C 1.34776 * 120.88096 * 231.20492 * 5 4 2 7 7 O 1.21510 * 120.00103 * 0.02562 * 6 5 4 8 8 O 1.34642 * 119.99907 * 180.02562 * 6 5 4 9 9 C 1.45199 * 117.00000 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47275 * 59.99681 * 9 8 6 11 11 C 1.52991 * 109.47216 * 180.02562 * 9 8 6 12 12 C 1.53007 * 109.46869 * 300.00161 * 9 8 6 13 13 C 1.47082 * 118.23950 * 51.18605 * 5 4 2 14 14 C 1.53239 * 108.51802 * 308.81452 * 13 5 4 15 15 N 1.46898 * 109.49402 * 120.05263 * 2 1 3 16 16 C 1.46898 * 111.00050 * 307.21182 * 15 2 1 17 17 C 1.53000 * 109.47182 * 292.65592 * 16 15 2 18 18 H 1.08996 * 109.47028 * 307.91754 * 17 16 15 19 19 C 1.47202 * 109.47202 * 67.92454 * 17 16 15 20 20 N 2.98271 * 79.17698 * 14.71107 * 2 1 3 21 21 C 1.53004 * 109.46913 * 187.92043 * 17 16 15 22 22 C 1.50705 * 109.46865 * 175.00240 * 21 17 16 23 23 H 1.07996 * 119.99890 * 359.97438 * 22 21 17 24 24 C 1.37873 * 119.99810 * 179.97438 * 22 21 17 25 25 N 1.31514 * 120.00334 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99863 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47254 * 90.00308 * 26 24 22 28 28 H 1.48506 * 109.47121 * 209.99843 * 26 24 22 29 29 H 1.48491 * 109.47133 * 330.00067 * 26 24 22 30 30 H 1.09004 * 109.47205 * 306.50014 * 1 2 3 31 31 H 1.09002 * 109.47087 * 66.49974 * 1 2 3 32 32 H 1.09001 * 109.47254 * 186.49565 * 1 2 3 33 33 H 1.09001 * 109.62796 * 305.92056 * 4 2 1 34 34 H 1.08996 * 109.62370 * 66.50126 * 4 2 1 35 35 H 1.09003 * 109.46723 * 59.99985 * 10 9 8 36 36 H 1.08997 * 109.47544 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47681 * 300.00726 * 10 9 8 38 38 H 1.08997 * 109.47899 * 59.99723 * 11 9 8 39 39 H 1.09005 * 109.47614 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.47137 * 299.99697 * 11 9 8 41 41 H 1.08995 * 109.47477 * 59.99993 * 12 9 8 42 42 H 1.08997 * 109.46821 * 179.97438 * 12 9 8 43 43 H 1.08992 * 109.46887 * 300.00068 * 12 9 8 44 44 H 1.09006 * 109.62676 * 68.51864 * 13 5 4 45 45 H 1.08990 * 109.63075 * 188.90891 * 13 5 4 46 46 H 1.08997 * 109.49398 * 293.86482 * 14 13 5 47 47 H 1.09002 * 109.49435 * 173.78868 * 14 13 5 48 48 H 1.09000 * 109.47488 * 172.65400 * 16 15 2 49 49 H 1.09003 * 109.47107 * 52.65562 * 16 15 2 50 50 H 1.09004 * 109.46936 * 294.99669 * 21 17 16 51 51 H 1.08997 * 109.47469 * 55.00379 * 21 17 16 52 52 H 0.97000 * 120.00595 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7241 -1.2500 5 7 3.5042 -0.8435 -1.1552 6 6 4.2977 -0.4492 -2.1707 7 8 3.8065 0.0126 -3.1816 8 8 5.6348 -0.5670 -2.0651 9 6 6.4273 -0.1218 -3.1974 10 6 6.1642 1.3638 -3.4513 11 6 7.9121 -0.3331 -2.8952 12 6 6.0403 -0.9278 -4.4390 13 6 4.0782 -1.4041 0.0775 14 6 3.4866 -0.6533 1.2752 15 7 2.0201 -0.6935 1.1986 16 6 1.4140 -0.1353 2.4147 17 6 1.9163 1.2946 2.6248 18 1 3.0056 1.3058 2.5897 19 6 1.3820 2.1633 1.5633 20 7 0.9698 2.8336 0.7440 21 6 1.4446 1.8057 3.9876 22 6 2.0402 3.1654 4.2477 23 1 2.6904 3.6194 3.5145 24 6 1.7550 3.8298 5.4216 25 7 0.9628 3.2773 6.3142 26 14 2.4938 5.5149 5.7443 27 1 1.5824 6.5636 5.2201 28 1 2.6766 5.7036 7.2059 29 1 3.8095 5.6172 5.0636 30 1 -0.3634 0.6113 0.8261 31 1 -0.3633 0.4098 -0.9424 32 1 -0.3634 -1.0211 0.1163 33 1 1.5957 -1.7173 -1.3059 34 1 1.7776 -0.1508 -2.1388 35 1 6.4399 1.9380 -2.5667 36 1 6.7588 1.6979 -4.3016 37 1 5.1063 1.5140 -3.6667 38 1 8.0992 -1.3915 -2.7145 39 1 8.5071 0.0016 -3.7450 40 1 8.1881 0.2408 -2.0106 41 1 4.9824 -0.7777 -4.6545 42 1 6.6348 -0.5933 -5.2891 43 1 6.2276 -1.9861 -4.2581 44 1 3.8283 -2.4627 0.1493 45 1 5.1613 -1.2836 0.0649 46 1 3.8235 0.3832 1.2572 47 1 3.8156 -1.1270 2.2001 48 1 1.6911 -0.7475 3.2729 49 1 0.3291 -0.1274 2.3092 50 1 0.3570 1.8786 3.9918 51 1 1.7654 1.1136 4.7662 52 1 0.7624 3.7445 7.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195530199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:53 Heat of formation + Delta-G solvation = -42.661507 kcal Electronic energy + Delta-G solvation = -31116.124483 eV Core-core repulsion = 27116.342423 eV Total energy + Delta-G solvation = -3999.782060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.04344 -39.77724 -37.51458 -36.19515 -34.81701 -34.21445 -33.58375 -32.59517 -31.40489 -28.37411 -27.63177 -27.56438 -27.18504 -25.83856 -23.61112 -22.93788 -22.01700 -21.89272 -19.92474 -19.19431 -17.98032 -17.06111 -16.67832 -16.51005 -16.27665 -15.74900 -15.42059 -15.27738 -14.70857 -14.63855 -14.43502 -14.36576 -13.87119 -13.61060 -13.27748 -12.87771 -12.72876 -12.63782 -12.50293 -12.34207 -12.24774 -12.17540 -12.10141 -12.09419 -11.92178 -11.61955 -11.58837 -11.50007 -11.39863 -11.21128 -11.13022 -11.04382 -10.89327 -10.68980 -10.58725 -10.52273 -10.20883 -10.06088 -9.71532 -9.37708 -8.90332 -8.50670 -8.06535 -6.14586 -4.18416 2.00992 2.75917 3.25576 3.32514 3.35522 3.47533 3.52302 3.66682 3.92771 4.35968 4.50672 4.55096 4.64630 4.69193 4.74133 4.83121 5.01390 5.14359 5.18368 5.23175 5.23955 5.28109 5.32381 5.40634 5.46280 5.51722 5.55022 5.56580 5.60800 5.65576 5.66239 5.72511 5.76772 5.82284 5.89131 6.00773 6.07385 6.08956 6.13004 6.21719 6.32055 6.33336 6.38042 6.43380 7.04817 7.08553 7.30529 7.36011 7.45356 7.79378 8.17082 8.24893 8.30521 8.85704 9.47546 10.95873 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.003013 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.141676 B = 9289.929990 C =10250.026172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 H 0.064 0.936 4 C 0.141 3.859 5 N -0.596 5.596 6 C 0.654 3.346 7 O -0.571 6.571 8 O -0.362 6.362 9 C 0.136 3.864 10 C -0.184 4.184 11 C -0.140 4.140 12 C -0.182 4.182 13 C 0.118 3.882 14 C 0.032 3.968 15 N -0.530 5.530 16 C 0.057 3.943 17 C -0.036 4.036 18 H 0.101 0.899 19 C 0.242 3.758 20 N -0.469 5.469 21 C 0.036 3.964 22 C -0.529 4.529 23 H 0.054 0.946 24 C 0.064 3.936 25 N -0.890 5.890 26 Si 0.890 3.110 27 H -0.280 1.280 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.026 0.974 51 H 0.040 0.960 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.702 -13.868 -15.123 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 H 0.081 0.919 4 C 0.020 3.980 5 N -0.336 5.336 6 C 0.409 3.591 7 O -0.461 6.461 8 O -0.277 6.277 9 C 0.099 3.901 10 C -0.242 4.242 11 C -0.197 4.197 12 C -0.239 4.239 13 C -0.005 4.005 14 C -0.097 4.097 15 N -0.254 5.254 16 C -0.071 4.071 17 C -0.059 4.059 18 H 0.119 0.881 19 C -0.074 4.074 20 N -0.146 5.146 21 C -0.003 4.003 22 C -0.567 4.567 23 H 0.072 0.928 24 C -0.138 4.138 25 N -0.528 5.528 26 Si 0.718 3.282 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.106 0.894 50 H 0.044 0.956 51 H 0.058 0.942 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.801 -13.175 -16.590 22.941 hybrid contribution 0.820 1.773 0.750 2.092 sum 9.621 -11.402 -15.841 21.760 Atomic orbital electron populations 1.21863 0.93207 1.02626 1.02595 1.22336 0.96361 0.97282 0.90076 0.91878 1.21792 0.76246 1.01484 0.98498 1.47032 1.06311 1.64662 1.15574 1.17957 0.80855 0.77286 0.83038 1.90880 1.75284 1.50062 1.29863 1.86286 1.16889 1.79251 1.45276 1.22051 0.89786 0.94579 0.83682 1.22518 1.05186 0.94131 1.02318 1.21852 0.91765 1.03126 1.02988 1.22504 1.04918 0.99760 0.96740 1.21864 0.98473 0.97982 0.82205 1.22573 0.88319 1.00026 0.98742 1.62295 1.05992 1.54724 1.02368 1.22493 1.00640 0.91869 0.92138 1.19977 1.00975 0.91717 0.93212 0.88120 1.29036 0.93061 0.92952 0.92320 1.81084 1.09758 1.10648 1.13140 1.19116 0.97397 0.96649 0.87092 1.21129 1.29827 1.02431 1.03301 0.92795 1.24938 0.94954 0.97880 0.96055 1.69927 1.35837 1.38256 1.08817 0.86615 0.79714 0.84472 0.77427 1.20636 1.20993 1.19800 0.91632 0.92037 0.91377 0.90417 0.88697 0.92087 0.91233 0.89398 0.91492 0.90235 0.91377 0.89414 0.91264 0.92255 0.90415 0.88845 0.93556 0.88497 0.88368 0.89443 0.95592 0.94224 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.91 37.15 0.29 -1.59 16 2 C 0.05 0.67 1.90 -67.59 -0.13 0.54 16 3 H 0.06 1.06 4.69 -51.93 -0.24 0.82 16 4 C 0.14 1.78 5.88 -3.60 -0.02 1.76 16 5 N -0.60 -7.57 3.01 -178.25 -0.54 -8.10 16 6 C 0.65 9.16 7.75 54.05 0.42 9.58 16 7 O -0.57 -9.11 11.33 -19.28 -0.22 -9.33 16 8 O -0.36 -4.48 8.57 -40.33 -0.35 -4.83 16 9 C 0.14 1.40 1.13 -90.62 -0.10 1.30 16 10 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 11 C -0.14 -1.05 8.85 37.15 0.33 -0.72 16 12 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 13 C 0.12 1.22 6.61 -3.60 -0.02 1.19 16 14 C 0.03 0.36 4.91 -3.70 -0.02 0.35 16 15 N -0.53 -6.60 4.68 -226.35 -1.06 -7.66 16 16 C 0.06 0.79 4.82 -3.83 -0.02 0.77 16 17 C -0.04 -0.63 1.96 -93.40 -0.18 -0.81 16 18 H 0.10 1.72 6.09 -51.93 -0.32 1.40 16 19 C 0.24 4.79 9.23 -20.76 -0.19 4.59 16 20 N -0.47 -9.99 17.30 42.15 0.73 -9.26 16 21 C 0.04 0.81 4.42 -27.88 -0.12 0.69 16 22 C -0.53 -13.89 8.60 -34.44 -0.30 -14.19 16 23 H 0.05 1.43 7.59 -52.49 -0.40 1.03 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 26 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.06 0.97 5.21 -51.93 -0.27 0.70 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.31 7.06 -51.93 -0.37 0.94 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.90 6.98 -51.93 -0.36 0.54 16 46 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 47 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 48 H 0.10 1.22 8.13 -51.93 -0.42 0.79 16 49 H 0.09 1.22 5.90 -51.93 -0.31 0.91 16 50 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.04 0.90 8.13 -51.93 -0.42 0.47 16 52 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -30.87 397.39 -7.95 -38.82 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.69 Total: 0.64 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 0.46 Total: 1.96 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.13 Total: -49.41 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.56 Total: -14.16 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.87 -7.95 -38.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195530199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.840 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds