Wall clock time and date at job start Tue Mar 31 2020 04:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09007 * 109.49422 * 2 1 4 4 C 1.53246 * 109.49533 * 239.91811 * 2 1 3 5 5 N 1.47078 * 108.52191 * 186.20983 * 4 2 1 6 6 C 1.34776 * 120.88096 * 231.20492 * 5 4 2 7 7 O 1.21510 * 120.00103 * 0.02562 * 6 5 4 8 8 O 1.34642 * 119.99907 * 180.02562 * 6 5 4 9 9 C 1.45199 * 117.00000 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47275 * 59.99681 * 9 8 6 11 11 C 1.52991 * 109.47216 * 180.02562 * 9 8 6 12 12 C 1.53007 * 109.46869 * 300.00161 * 9 8 6 13 13 C 1.47082 * 118.23950 * 51.18605 * 5 4 2 14 14 C 1.53239 * 108.51802 * 308.81452 * 13 5 4 15 15 N 1.46898 * 109.49402 * 120.05263 * 2 1 3 16 16 C 1.46898 * 111.00050 * 307.21182 * 15 2 1 17 17 C 1.53000 * 109.47182 * 292.65592 * 16 15 2 18 18 H 1.08996 * 109.47028 * 307.91754 * 17 16 15 19 19 C 1.47202 * 109.47202 * 67.92454 * 17 16 15 20 20 N 2.98271 * 79.17698 * 14.71107 * 2 1 3 21 21 C 1.53004 * 109.46913 * 187.92043 * 17 16 15 22 22 C 1.50705 * 109.46865 * 175.00240 * 21 17 16 23 23 H 1.07996 * 119.99890 * 359.97438 * 22 21 17 24 24 C 1.37873 * 119.99810 * 179.97438 * 22 21 17 25 25 N 1.31514 * 120.00334 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99863 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47254 * 90.00308 * 26 24 22 28 28 H 1.48506 * 109.47121 * 209.99843 * 26 24 22 29 29 H 1.48491 * 109.47133 * 330.00067 * 26 24 22 30 30 H 1.09004 * 109.47205 * 306.50014 * 1 2 3 31 31 H 1.09002 * 109.47087 * 66.49974 * 1 2 3 32 32 H 1.09001 * 109.47254 * 186.49565 * 1 2 3 33 33 H 1.09001 * 109.62796 * 305.92056 * 4 2 1 34 34 H 1.08996 * 109.62370 * 66.50126 * 4 2 1 35 35 H 1.09003 * 109.46723 * 59.99985 * 10 9 8 36 36 H 1.08997 * 109.47544 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47681 * 300.00726 * 10 9 8 38 38 H 1.08997 * 109.47899 * 59.99723 * 11 9 8 39 39 H 1.09005 * 109.47614 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.47137 * 299.99697 * 11 9 8 41 41 H 1.08995 * 109.47477 * 59.99993 * 12 9 8 42 42 H 1.08997 * 109.46821 * 179.97438 * 12 9 8 43 43 H 1.08992 * 109.46887 * 300.00068 * 12 9 8 44 44 H 1.09006 * 109.62676 * 68.51864 * 13 5 4 45 45 H 1.08990 * 109.63075 * 188.90891 * 13 5 4 46 46 H 1.08997 * 109.49398 * 293.86482 * 14 13 5 47 47 H 1.09002 * 109.49435 * 173.78868 * 14 13 5 48 48 H 1.09000 * 109.47488 * 172.65400 * 16 15 2 49 49 H 1.09003 * 109.47107 * 52.65562 * 16 15 2 50 50 H 1.09004 * 109.46936 * 294.99669 * 21 17 16 51 51 H 1.08997 * 109.47469 * 55.00379 * 21 17 16 52 52 H 0.97000 * 120.00595 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7241 -1.2500 5 7 3.5042 -0.8435 -1.1552 6 6 4.2977 -0.4492 -2.1707 7 8 3.8065 0.0126 -3.1816 8 8 5.6348 -0.5670 -2.0651 9 6 6.4273 -0.1218 -3.1974 10 6 6.1642 1.3638 -3.4513 11 6 7.9121 -0.3331 -2.8952 12 6 6.0403 -0.9278 -4.4390 13 6 4.0782 -1.4041 0.0775 14 6 3.4866 -0.6533 1.2752 15 7 2.0201 -0.6935 1.1986 16 6 1.4140 -0.1353 2.4147 17 6 1.9163 1.2946 2.6248 18 1 3.0056 1.3058 2.5897 19 6 1.3820 2.1633 1.5633 20 7 0.9698 2.8336 0.7440 21 6 1.4446 1.8057 3.9876 22 6 2.0402 3.1654 4.2477 23 1 2.6904 3.6194 3.5145 24 6 1.7550 3.8298 5.4216 25 7 0.9628 3.2773 6.3142 26 14 2.4938 5.5149 5.7443 27 1 1.5824 6.5636 5.2201 28 1 2.6766 5.7036 7.2059 29 1 3.8095 5.6172 5.0636 30 1 -0.3634 0.6113 0.8261 31 1 -0.3633 0.4098 -0.9424 32 1 -0.3634 -1.0211 0.1163 33 1 1.5957 -1.7173 -1.3059 34 1 1.7776 -0.1508 -2.1388 35 1 6.4399 1.9380 -2.5667 36 1 6.7588 1.6979 -4.3016 37 1 5.1063 1.5140 -3.6667 38 1 8.0992 -1.3915 -2.7145 39 1 8.5071 0.0016 -3.7450 40 1 8.1881 0.2408 -2.0106 41 1 4.9824 -0.7777 -4.6545 42 1 6.6348 -0.5933 -5.2891 43 1 6.2276 -1.9861 -4.2581 44 1 3.8283 -2.4627 0.1493 45 1 5.1613 -1.2836 0.0649 46 1 3.8235 0.3832 1.2572 47 1 3.8156 -1.1270 2.2001 48 1 1.6911 -0.7475 3.2729 49 1 0.3291 -0.1274 2.3092 50 1 0.3570 1.8786 3.9918 51 1 1.7654 1.1136 4.7662 52 1 0.7624 3.7445 7.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195530199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:52 Heat of formation + Delta-G solvation = -61.548563 kcal Electronic energy + Delta-G solvation = -31116.943487 eV Core-core repulsion = 27116.342423 eV Total energy + Delta-G solvation = -4000.601064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.04110 -40.87951 -38.60734 -37.46138 -36.12320 -35.58792 -34.82008 -33.85991 -32.87677 -29.65480 -28.39028 -28.34417 -28.22280 -27.38315 -24.81979 -23.94915 -23.81478 -22.84645 -20.95133 -20.19762 -19.01596 -18.49401 -18.33415 -17.70787 -17.29479 -16.98822 -16.56738 -16.40267 -16.20702 -15.66365 -15.53625 -15.44564 -14.83089 -14.72309 -14.51655 -14.32155 -14.06947 -13.94784 -13.78095 -13.45393 -13.17937 -13.14490 -13.10268 -13.03080 -12.99438 -12.87299 -12.82923 -12.68433 -12.60677 -12.53622 -12.43907 -12.31780 -12.25811 -12.08945 -11.97659 -11.69214 -11.40434 -11.37414 -11.27092 -11.05413 -10.58405 -9.91632 -9.22123 -8.22129 -6.30823 1.07630 1.35515 1.38465 1.46810 1.71173 1.89865 1.92790 2.37849 2.75812 2.88612 3.12010 3.18974 3.69735 3.74255 3.79241 3.84764 3.94153 4.02035 4.06976 4.18758 4.26494 4.34517 4.43216 4.45106 4.56524 4.59884 4.62648 4.70363 4.72999 4.75135 4.78238 4.82595 4.84807 4.87640 4.91376 4.97034 5.05276 5.10538 5.13085 5.25431 5.26150 5.31273 5.39180 5.43506 5.45764 5.59447 5.75725 5.94209 6.03960 6.17274 6.30559 6.70823 6.83282 7.22803 7.37743 8.87771 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.003013 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.141676 B = 9289.929990 C =10250.026172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 H 0.029 0.971 4 C 0.147 3.853 5 N -0.598 5.598 6 C 0.647 3.353 7 O -0.598 6.598 8 O -0.363 6.363 9 C 0.124 3.876 10 C -0.182 4.182 11 C -0.134 4.134 12 C -0.176 4.176 13 C 0.120 3.880 14 C 0.029 3.971 15 N -0.514 5.514 16 C 0.066 3.934 17 C -0.025 4.025 18 H 0.111 0.889 19 C 0.251 3.749 20 N -0.502 5.502 21 C 0.044 3.956 22 C -0.541 4.541 23 H 0.045 0.955 24 C 0.016 3.984 25 N -0.919 5.919 26 Si 0.943 3.057 27 H -0.285 1.285 28 H -0.275 1.275 29 H -0.267 1.267 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.087 0.913 50 H 0.002 0.998 51 H 0.041 0.959 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.515 -15.612 -15.158 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 H 0.047 0.953 4 C 0.025 3.975 5 N -0.339 5.339 6 C 0.402 3.598 7 O -0.489 6.489 8 O -0.277 6.277 9 C 0.088 3.912 10 C -0.239 4.239 11 C -0.191 4.191 12 C -0.233 4.233 13 C -0.002 4.002 14 C -0.099 4.099 15 N -0.237 5.237 16 C -0.063 4.063 17 C -0.048 4.048 18 H 0.129 0.871 19 C -0.064 4.064 20 N -0.179 5.179 21 C 0.005 3.995 22 C -0.580 4.580 23 H 0.064 0.936 24 C -0.184 4.184 25 N -0.558 5.558 26 Si 0.769 3.231 27 H -0.212 1.212 28 H -0.200 1.200 29 H -0.192 1.192 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.043 0.957 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.105 0.895 50 H 0.020 0.980 51 H 0.059 0.941 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.637 -14.931 -16.619 24.744 hybrid contribution 0.276 2.339 0.718 2.463 sum 10.913 -12.592 -15.901 23.032 Atomic orbital electron populations 1.21809 0.92801 1.03534 1.01607 1.22239 0.96692 0.95665 0.91141 0.95283 1.21701 0.76597 1.02083 0.97087 1.47186 1.06251 1.64344 1.16076 1.18177 0.81460 0.77123 0.83031 1.90873 1.75859 1.51161 1.31056 1.86293 1.16025 1.79140 1.46270 1.22412 0.91166 0.94014 0.83591 1.22483 1.03458 0.94990 1.02950 1.21870 0.89487 1.03830 1.03901 1.22441 1.03400 1.00244 0.97262 1.22014 0.98882 0.98752 0.80509 1.22716 0.87308 0.99273 1.00600 1.62368 1.06797 1.53316 1.01250 1.22491 1.00721 0.89435 0.93633 1.19990 1.01403 0.93516 0.89892 0.87147 1.29469 0.92319 0.92477 0.92166 1.81070 1.10883 1.11792 1.14202 1.18930 0.95616 0.95227 0.89737 1.21520 1.29420 1.04105 1.02905 0.93623 1.25638 0.95527 1.00987 0.96212 1.70005 1.37003 1.39576 1.09265 0.85785 0.79033 0.80616 0.77700 1.21171 1.20012 1.19179 0.93675 0.92308 0.89078 0.88244 0.90527 0.92728 0.88929 0.92563 0.90590 0.88018 0.91542 0.92270 0.89143 0.91455 0.88193 0.87918 0.95745 0.85790 0.85936 0.89477 0.97964 0.94058 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 7.91 71.98 0.57 -2.98 16 2 C 0.05 1.40 1.90 44.99 0.09 1.48 16 3 H 0.03 1.00 4.69 -2.38 -0.01 0.99 16 4 C 0.15 3.61 5.88 86.35 0.51 4.12 16 5 N -0.60 -14.63 3.01 -948.27 -2.85 -17.49 16 6 C 0.65 18.08 7.75 129.79 1.01 19.09 16 7 O -0.60 -19.71 11.33 19.81 0.22 -19.49 16 8 O -0.36 -8.67 8.57 -55.51 -0.48 -9.15 16 9 C 0.12 2.43 1.13 -10.80 -0.01 2.41 16 10 C -0.18 -3.92 8.37 71.98 0.60 -3.32 16 11 C -0.13 -1.68 8.85 71.98 0.64 -1.04 16 12 C -0.18 -3.22 8.37 71.98 0.60 -2.61 16 13 C 0.12 2.20 6.61 86.35 0.57 2.77 16 14 C 0.03 0.60 4.91 86.38 0.42 1.02 16 15 N -0.51 -11.74 4.68 -870.02 -4.07 -15.81 16 16 C 0.07 1.70 4.82 86.30 0.42 2.12 16 17 C -0.02 -0.86 1.96 -12.60 -0.02 -0.89 16 18 H 0.11 3.66 6.09 -2.39 -0.01 3.65 16 19 C 0.25 10.06 9.23 89.44 0.83 10.89 16 20 N -0.50 -21.97 17.30 20.01 0.35 -21.63 16 21 C 0.04 1.96 4.42 29.85 0.13 2.09 16 22 C -0.54 -28.54 8.60 25.60 0.22 -28.32 16 23 H 0.05 2.43 7.59 -2.91 -0.02 2.41 16 24 C 0.02 0.86 5.46 84.65 0.46 1.32 16 25 N -0.92 -52.00 13.29 21.45 0.28 -51.72 16 26 Si 0.94 43.37 29.54 68.60 2.03 45.40 16 27 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 30 H 0.04 1.33 5.21 -2.38 -0.01 1.32 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.17 7.06 -2.39 -0.02 2.15 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.59 5.88 -2.39 -0.01 1.58 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.10 1.72 6.98 -2.39 -0.02 1.70 16 46 H 0.02 0.62 6.51 -2.39 -0.02 0.60 16 47 H 0.12 1.90 8.11 -2.39 -0.02 1.88 16 48 H 0.12 2.64 8.13 -2.39 -0.02 2.62 16 49 H 0.09 2.31 5.90 -2.39 -0.01 2.29 16 50 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 51 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 52 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -68.24 397.39 3.42 -64.82 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.91 Total: 16.90 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 7.03 Total: 8.15 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -6.29 Total: -106.64 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.25 Total: -28.63 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.24 3.42 -64.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195530199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.276 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds