Wall clock time and date at job start Tue Mar 31 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47142 * 2 1 4 4 C 1.53001 * 109.47486 * 239.99875 * 2 1 3 5 5 C 1.50702 * 109.46905 * 60.00248 * 4 2 1 6 6 H 1.08001 * 119.99814 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00122 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99755 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00116 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47290 * 89.99900 * 9 7 5 11 11 H 1.48500 * 109.47028 * 209.99958 * 9 7 5 12 12 H 1.48497 * 109.47202 * 329.99548 * 9 7 5 13 13 C 1.53002 * 109.46984 * 120.00008 * 2 1 3 14 14 N 1.46501 * 109.47272 * 300.00049 * 13 2 1 15 15 C 1.38994 * 120.00339 * 179.97438 * 14 13 2 16 16 C 1.39139 * 119.70410 * 0.02562 * 15 14 13 17 17 C 1.38305 * 119.09622 * 179.71969 * 16 15 14 18 18 C 1.50696 * 120.74563 * 180.23082 * 17 16 15 19 19 C 1.52994 * 109.47222 * 90.00373 * 18 17 16 20 20 C 1.50705 * 109.47218 * 179.97438 * 19 18 17 21 21 C 1.38235 * 120.00046 * 269.72588 * 20 19 18 22 22 C 1.38228 * 119.99938 * 179.76467 * 21 20 19 23 23 C 1.38234 * 120.00084 * 0.51209 * 22 21 20 24 24 C 1.38240 * 119.99784 * 359.74160 * 23 22 21 25 25 C 1.38233 * 120.00113 * 0.02562 * 24 23 22 26 26 C 1.38879 * 118.50479 * 0.25546 * 17 16 15 27 27 C 1.38022 * 119.33137 * 359.97438 * 26 17 16 28 28 N 1.31967 * 120.85662 * 0.02562 * 27 26 17 29 29 H 1.08998 * 109.47491 * 299.99956 * 1 2 3 30 30 H 1.09005 * 109.46976 * 60.00249 * 1 2 3 31 31 H 1.09002 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46909 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47138 * 300.00035 * 3 2 1 34 34 H 1.08998 * 109.46627 * 60.00158 * 3 2 1 35 35 H 1.08995 * 109.47334 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46811 * 300.00254 * 4 2 1 37 37 H 0.96998 * 119.99999 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47450 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.46994 * 60.00239 * 13 2 1 40 40 H 0.97008 * 119.99846 * 0.02562 * 14 13 2 41 41 H 1.08002 * 120.45446 * 0.02562 * 16 15 14 42 42 H 1.09004 * 109.47231 * 210.00557 * 18 17 16 43 43 H 1.09004 * 109.47348 * 330.00320 * 18 17 16 44 44 H 1.08998 * 109.47454 * 299.99951 * 19 18 17 45 45 H 1.08996 * 109.47250 * 59.99704 * 19 18 17 46 46 H 1.08004 * 119.99921 * 359.97438 * 21 20 19 47 47 H 1.07998 * 120.00347 * 180.23014 * 22 21 20 48 48 H 1.07999 * 120.00319 * 179.72225 * 23 22 21 49 49 H 1.08006 * 119.99604 * 179.97438 * 24 23 22 50 50 H 1.08003 * 119.99905 * 179.97438 * 25 24 23 51 51 H 1.08000 * 120.33634 * 180.02562 * 26 17 16 52 52 H 1.07997 * 119.57464 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5514 -3.8526 9 14 1.2485 0.3989 -5.2572 10 1 2.2274 1.4398 -5.6614 11 1 1.0827 -0.5802 -6.3614 12 1 -0.0592 1.0373 -4.9614 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8869 -0.5058 3.7079 16 6 2.6872 -1.6376 3.8284 17 6 3.0179 -2.0961 5.0907 18 6 3.8865 -3.3152 5.2644 19 6 5.3555 -2.8911 5.3193 20 6 6.2242 -4.1102 5.4937 21 6 6.5496 -4.5513 6.7627 22 6 7.3424 -5.6723 6.9227 23 6 7.8184 -6.3462 5.8135 24 6 7.4972 -5.9021 4.5444 25 6 6.7005 -4.7838 4.3845 26 6 2.5310 -1.4080 6.1944 27 6 1.7379 -0.2950 6.0014 28 7 1.4383 0.1199 4.7850 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 -0.7209 -1.2494 36 1 1.6767 -1.7489 -1.2492 37 1 2.8610 -1.8828 -4.7336 38 1 3.1299 -0.7209 1.2496 39 1 1.6766 -1.7490 1.2492 40 1 0.9936 0.7578 2.3564 41 1 3.0493 -2.1483 2.9484 42 1 3.6198 -3.8223 6.1917 43 1 3.7350 -3.9922 4.4236 44 1 5.6223 -2.3841 4.3920 45 1 5.5071 -2.2142 6.1600 46 1 6.1817 -4.0219 7.6293 47 1 7.5936 -6.0191 7.9141 48 1 8.4415 -7.2194 5.9384 49 1 7.8695 -6.4284 3.6779 50 1 6.4499 -4.4366 3.3930 51 1 2.7712 -1.7399 7.1937 52 1 1.3568 0.2428 6.8569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225491193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:17 Heat of formation + Delta-G solvation = 31.053782 kcal Electronic energy + Delta-G solvation = -27901.905367 eV Core-core repulsion = 24250.743194 eV Total energy + Delta-G solvation = -3651.162173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.205 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.25446 -39.45956 -37.73521 -35.47733 -34.20129 -32.36160 -32.18790 -31.10983 -29.40179 -28.81825 -27.03023 -26.50567 -26.05548 -24.75805 -23.30798 -22.79369 -22.16925 -21.46830 -20.82356 -18.27190 -17.10601 -16.88654 -16.62880 -16.24516 -15.66205 -15.42793 -15.36794 -14.68662 -14.65082 -14.38946 -14.14061 -13.82856 -13.68700 -13.60722 -13.33770 -13.32787 -12.95596 -12.78409 -12.43348 -12.34895 -12.15778 -12.08767 -11.80294 -11.37255 -11.25637 -11.14893 -11.03257 -10.94389 -10.86250 -10.66280 -10.43325 -10.26925 -10.08543 -9.76211 -9.43796 -9.31906 -9.24625 -9.14824 -8.96634 -8.87150 -8.39168 -7.46822 -6.03684 -4.04493 1.09404 1.17437 1.42155 1.58428 3.29166 3.36191 3.37946 3.45020 3.55232 4.04218 4.39348 4.43011 4.57996 4.72723 4.76591 4.84993 4.95288 4.95688 5.15706 5.23027 5.28484 5.29931 5.32260 5.33517 5.40734 5.43708 5.54445 5.54971 5.68320 5.73746 5.79240 5.84732 5.91098 5.98776 6.06140 6.09551 6.15768 6.23722 6.25279 6.29393 6.37038 6.40421 6.50756 6.62015 6.62997 6.74438 6.78420 7.02411 7.05462 7.07873 7.28600 7.58170 7.70773 7.85102 7.95025 8.35969 8.39442 8.99985 9.58879 11.07843 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.002314 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.672801 B =12098.757282 C =14544.207914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.135 3.865 14 N -0.714 5.714 15 C 0.410 3.590 16 C -0.238 4.238 17 C 0.001 3.999 18 C -0.074 4.074 19 C -0.075 4.075 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.246 4.246 27 C 0.149 3.851 28 N -0.555 5.555 29 H 0.031 0.969 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.403 0.597 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.124 0.876 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -5.687 22.716 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.011 3.989 14 N -0.345 5.345 15 C 0.173 3.827 16 C -0.263 4.263 17 C -0.007 4.007 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.079 4.079 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.269 4.269 27 C -0.009 4.009 28 N -0.274 5.274 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.240 0.760 41 H 0.149 0.851 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.142 0.858 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.012 -5.180 22.259 23.632 hybrid contribution 0.075 -0.106 -0.868 0.877 sum 6.086 -5.286 21.392 22.860 Atomic orbital electron populations 1.21756 0.95166 1.01131 1.00419 1.20874 0.95606 0.95927 0.94653 1.21755 1.00410 0.95878 1.00416 1.19094 0.96260 0.95178 0.89544 1.21180 1.31147 1.12061 0.90482 0.92244 1.25005 0.95320 0.95064 0.99098 1.69954 1.37041 1.23033 1.23465 0.86642 0.79231 0.79424 0.83001 1.20754 1.21324 1.19926 1.21683 0.98247 0.95802 0.83169 1.44890 1.55536 1.32576 1.01480 1.18460 0.89116 0.88880 0.86205 1.21311 1.06476 1.00339 0.98202 1.19922 0.93538 0.94696 0.92533 1.20578 0.92591 0.94646 1.03303 1.20571 0.92497 0.94640 1.03496 1.19924 0.97782 0.96995 0.93244 1.21059 0.98802 0.97017 0.96737 1.21133 0.98182 0.95883 0.98687 1.21153 1.00495 1.00107 0.92792 1.21193 0.98279 0.96735 0.97375 1.21161 0.97756 0.95704 0.98705 1.21564 1.06096 1.00380 0.98849 1.22275 0.92567 0.92799 0.93251 1.67180 1.27870 1.33973 0.98333 0.95007 0.91454 0.93444 0.93447 0.91457 0.95010 0.96388 0.96380 0.93042 0.92292 0.92287 0.75970 0.85135 0.90578 0.90438 0.90462 0.90687 0.86143 0.86248 0.86295 0.86024 0.85773 0.85799 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.39 7.65 -34.44 -0.26 -13.65 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.13 2.21 3.78 -4.04 -0.02 2.19 16 14 N -0.71 -10.92 5.13 -60.42 -0.31 -11.23 16 15 C 0.41 6.21 7.65 -155.03 -1.19 5.03 16 16 C -0.24 -3.25 9.03 -39.22 -0.35 -3.61 16 17 C 0.00 0.01 5.17 -104.36 -0.54 -0.53 16 18 C -0.07 -0.69 5.37 -27.89 -0.15 -0.84 16 19 C -0.07 -0.66 5.33 -27.88 -0.15 -0.81 16 20 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 21 C -0.12 -0.99 9.70 -39.59 -0.38 -1.38 16 22 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 23 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 26 C -0.25 -2.66 9.81 -39.42 -0.39 -3.05 16 27 C 0.15 1.79 11.17 -17.57 -0.20 1.59 16 28 N -0.55 -8.26 10.39 -12.44 -0.13 -8.39 16 29 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 30 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 34 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 39 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 40 H 0.40 6.13 6.29 -40.82 -0.26 5.87 16 41 H 0.13 1.75 6.71 -52.49 -0.35 1.39 16 42 H 0.08 0.64 8.10 -51.93 -0.42 0.21 16 43 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 45 H 0.07 0.62 8.08 -51.93 -0.42 0.21 16 46 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 50 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 52 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 416.58 15.07 6.28 6.28 Total: -1.00 -29.58 416.58 -12.48 -42.06 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.60 Total: 5.62 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -5.43 Total: -25.16 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.30 Total: -44.86 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.58 -12.48 -42.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225491193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.114 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds