Wall clock time and date at job start Tue Mar 31 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52340 * 109.47176 * 134.63794 * 3 2 1 5 5 H 1.07831 * 113.53066 * 305.69912 * 4 3 2 6 6 C 1.58783 * 111.64098 * 73.55738 * 4 3 2 7 7 C 1.54621 * 106.18534 * 155.71070 * 6 4 3 8 8 H 1.09633 * 109.55662 * 110.02400 * 7 6 4 9 9 C 1.52135 * 118.34820 * 237.19954 * 7 6 4 10 10 H 1.10032 * 107.53221 * 249.56871 * 9 7 6 11 11 C 1.52179 * 119.19300 * 11.56752 * 9 7 6 12 12 C 1.55148 * 103.42281 * 150.68294 * 11 9 7 13 13 H 1.10275 * 109.06974 * 73.34944 * 12 11 9 14 14 C 1.50131 * 112.37859 * 194.51805 * 12 11 9 15 15 H 1.08005 * 119.99952 * 118.54391 * 14 12 11 16 16 C 1.37875 * 120.00222 * 298.55481 * 14 12 11 17 17 N 1.31523 * 119.99933 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00315 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47165 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47474 * 119.99318 * 18 16 14 21 21 H 1.48495 * 109.47547 * 239.99787 * 18 16 14 22 22 C 1.57130 * 103.97048 * 316.80150 * 12 11 9 23 23 H 1.09657 * 114.63175 * 162.60629 * 22 12 11 24 24 C 1.55062 * 109.70397 * 133.97523 * 9 7 6 25 25 H 1.08824 * 112.27083 * 104.63010 * 24 9 7 26 26 C 1.54005 * 104.23456 * 342.50277 * 24 9 7 27 27 H 1.09045 * 117.87120 * 149.56162 * 26 24 9 28 28 C 1.49040 * 94.62343 * 278.38052 * 26 24 9 29 29 H 1.06978 * 90.16561 * 52.91448 * 28 26 24 30 30 C 1.51222 * 119.94190 * 155.88165 * 28 26 24 31 31 H 1.10760 * 117.55936 * 49.79834 * 30 28 26 32 32 C 1.52015 * 94.47104 * 165.08492 * 30 28 26 33 33 H 1.08467 * 118.35562 * 132.58337 * 32 30 28 34 34 O 1.43636 * 115.07108 * 284.74139 * 32 30 28 35 35 C 1.39283 * 67.99694 * 98.93185 * 34 32 30 36 36 H 1.09564 * 111.75096 * 110.77403 * 35 34 32 37 37 C 1.44429 * 138.11151 * 286.52123 * 35 34 32 38 38 H 1.10157 * 96.10832 * 118.38871 * 37 35 34 39 39 C 1.44647 * 82.75260 * 299.56080 * 30 28 26 40 40 H 1.07115 * 98.60624 * 290.43130 * 39 30 28 41 41 C 1.54013 * 109.72499 * 9.10801 * 26 24 9 42 42 H 1.09976 * 114.58411 * 129.28838 * 41 26 24 43 43 H 1.09001 * 109.47539 * 14.63470 * 3 2 1 44 44 H 1.09007 * 109.46784 * 254.63747 * 3 2 1 45 45 H 1.09034 * 108.98852 * 274.21147 * 6 4 3 46 46 H 1.08358 * 109.84696 * 35.39820 * 6 4 3 47 47 H 1.09568 * 110.16915 * 268.11935 * 11 9 7 48 48 H 1.08521 * 112.01882 * 30.46900 * 11 9 7 49 49 H 0.96992 * 119.99711 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1154 1.0100 -1.0220 5 1 2.7150 0.8589 -2.0118 6 6 2.9160 2.5030 -0.5193 7 6 3.9666 3.3542 -1.2693 8 1 3.4629 4.0018 -1.9964 9 6 4.9583 4.1653 -0.4488 10 1 4.7077 5.2284 -0.5824 11 6 5.0631 3.9148 1.0485 12 6 6.5390 4.2687 1.3704 13 1 6.6628 5.3639 1.3348 14 6 6.9653 3.7687 2.7203 15 1 7.7699 3.0528 2.8016 16 6 6.3297 4.2232 3.8562 17 7 5.3501 5.0953 3.7573 18 14 6.8597 3.6006 5.5357 19 1 7.9745 2.6326 5.3756 20 1 7.3124 4.7444 6.3676 21 1 5.7133 2.9292 6.1992 22 6 7.3510 3.6149 0.1948 23 1 8.3714 3.9984 0.0756 24 6 6.3883 3.9717 -1.0164 25 1 6.7284 4.8373 -1.5814 26 6 6.2829 2.7036 -1.8839 27 1 6.9368 2.6248 -2.7530 28 6 6.4152 1.7617 -0.7365 29 1 5.6169 2.2620 -0.2297 30 6 5.8598 0.3593 -0.8433 31 1 6.1291 -0.2316 -1.7405 32 6 6.6176 -0.1609 0.3675 33 1 6.0735 -0.7393 1.1064 34 8 8.0187 -0.3948 0.1542 35 6 7.7828 0.8282 0.7776 36 1 8.1280 0.8271 1.8175 37 6 7.2737 2.1334 0.4267 38 1 6.4132 2.1124 1.1142 39 6 4.6118 1.0649 -1.0352 40 1 4.4934 1.4536 -0.0441 41 6 4.8059 2.2899 -2.0226 42 1 4.4754 2.1133 -3.0565 43 1 2.9719 -0.9935 -0.2596 44 1 2.9712 0.2731 0.9910 45 1 1.9108 2.8343 -0.7813 46 1 3.0647 2.5531 0.5528 47 1 4.3907 4.5877 1.5922 48 1 4.8356 2.8853 1.3057 49 1 4.9032 5.4153 4.5564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254309200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:52 Heat of formation + Delta-G solvation = 272.506452 kcal Electronic energy + Delta-G solvation = -32175.603079 eV Core-core repulsion = 28464.503896 eV Total energy + Delta-G solvation = -3711.099183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.178 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -45.19351 -40.31859 -38.11640 -36.48083 -34.97155 -33.69282 -32.25100 -30.37448 -29.76233 -28.31109 -26.29923 -25.43675 -24.74767 -23.94215 -23.36768 -21.31608 -20.13988 -19.43925 -18.87174 -18.30079 -17.93822 -17.28394 -16.55626 -16.11428 -15.85706 -15.29595 -14.94145 -14.81364 -14.75102 -14.63991 -13.76888 -13.49930 -13.37121 -13.12832 -13.02540 -12.57068 -12.32427 -12.17866 -11.97100 -11.72591 -11.60497 -11.31928 -11.20630 -11.03052 -10.92858 -10.88296 -10.78606 -10.55022 -10.44221 -10.24731 -10.10017 -9.94895 -9.77463 -9.63596 -9.46679 -9.28658 -9.09626 -8.87868 -8.58237 -8.46290 -7.95864 -6.13268 -4.15935 2.72032 2.76029 3.21871 3.32073 3.34363 3.34891 3.50668 3.85888 3.99506 4.19364 4.34248 4.39050 4.60177 4.73224 4.81244 4.97094 5.02636 5.14962 5.19476 5.30028 5.32794 5.42292 5.51231 5.53436 5.54949 5.58899 5.66942 5.69626 5.73176 5.80130 5.86420 5.95788 6.02601 6.12301 6.12761 6.18004 6.23703 6.28023 6.33954 6.45862 6.47657 6.49610 6.58075 6.61464 6.77069 6.94285 6.96154 7.06915 7.11030 7.22227 7.52955 7.53335 7.69580 7.87361 8.31389 8.87970 9.49093 10.95319 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.005681 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.423690 B = 4927.179469 C = 5512.796594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.213 3.787 3 C -0.023 4.023 4 C -0.063 4.063 5 H 0.084 0.916 6 C -0.120 4.120 7 C -0.079 4.079 8 H 0.069 0.931 9 C -0.091 4.091 10 H 0.056 0.944 11 C -0.101 4.101 12 C 0.055 3.945 13 H 0.030 0.970 14 C -0.511 4.511 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.885 3.115 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.037 4.037 23 H 0.077 0.923 24 C -0.082 4.082 25 H 0.075 0.925 26 C -0.079 4.079 27 H 0.097 0.903 28 C -0.241 4.241 29 H 0.107 0.893 30 C -0.032 4.032 31 H 0.085 0.915 32 C -0.042 4.042 33 H 0.130 0.870 34 O -0.313 6.313 35 C 0.067 3.933 36 H 0.099 0.901 37 C -0.081 4.081 38 H 0.100 0.900 39 C -0.106 4.106 40 H 0.056 0.944 41 C -0.082 4.082 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -6.322 -10.045 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.104 4.104 3 C -0.063 4.063 4 C -0.083 4.083 5 H 0.103 0.897 6 C -0.157 4.157 7 C -0.098 4.098 8 H 0.087 0.913 9 C -0.110 4.110 10 H 0.075 0.925 11 C -0.139 4.139 12 C 0.037 3.963 13 H 0.048 0.952 14 C -0.549 4.549 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.713 3.287 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.055 4.055 23 H 0.095 0.905 24 C -0.100 4.100 25 H 0.093 0.907 26 C -0.097 4.097 27 H 0.116 0.884 28 C -0.258 4.258 29 H 0.124 0.876 30 C -0.051 4.051 31 H 0.103 0.897 32 C -0.099 4.099 33 H 0.148 0.852 34 O -0.232 6.232 35 C 0.009 3.991 36 H 0.117 0.883 37 C -0.099 4.099 38 H 0.118 0.882 39 C -0.124 4.124 40 H 0.075 0.925 41 C -0.100 4.100 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.842 -6.309 -9.922 12.096 hybrid contribution 0.536 -0.269 0.977 1.147 sum -2.306 -6.579 -8.945 11.340 Atomic orbital electron populations 1.81204 1.13127 1.09071 1.08963 1.29245 0.95314 0.92873 0.92972 1.19299 0.81538 1.02675 1.02808 1.21761 0.94618 0.94012 0.97905 0.89738 1.23389 0.98443 0.92567 1.01320 1.22009 0.95182 0.95581 0.97003 0.91287 1.21700 0.92627 0.99113 0.97544 0.92521 1.22064 1.01698 1.00137 0.89965 1.20349 0.88832 0.96060 0.91071 0.95154 1.20976 1.17928 1.25712 0.90264 0.92085 1.24934 0.94972 0.94850 0.98920 1.69935 1.23055 1.30693 1.28880 0.86644 0.78639 0.78885 0.84551 1.19588 1.21059 1.21127 1.22575 0.97993 0.89111 0.95860 0.90498 1.23653 0.95442 0.96191 0.94735 0.90675 1.21616 0.95715 0.95603 0.96792 0.88447 1.23661 1.09457 0.94342 0.98357 0.87567 1.18312 0.93653 0.95332 0.97789 0.89713 1.23879 0.80518 1.06615 0.98909 0.85239 1.91009 1.19018 1.28995 1.84215 1.21202 0.96301 0.84579 0.96972 0.88330 1.19591 0.98643 0.92804 0.98869 0.88247 1.20400 0.90739 0.98400 1.02899 0.92534 1.24109 0.94494 0.93798 0.97610 0.89455 0.86806 0.86953 0.92085 0.89829 0.90171 0.93224 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.50 18.54 42.15 0.78 -5.72 16 2 C 0.21 2.48 15.22 -20.76 -0.32 2.16 16 3 C -0.02 -0.21 5.18 -29.86 -0.15 -0.36 16 4 C -0.06 -0.63 2.83 -89.36 -0.25 -0.89 16 5 H 0.08 0.78 7.97 -52.58 -0.42 0.36 16 6 C -0.12 -1.46 5.20 -22.67 -0.12 -1.58 16 7 C -0.08 -1.03 3.36 -89.12 -0.30 -1.33 16 8 H 0.07 0.84 8.19 -51.57 -0.42 0.42 16 9 C -0.09 -1.45 2.49 -90.39 -0.23 -1.67 16 10 H 0.06 0.93 8.21 -51.34 -0.42 0.51 16 11 C -0.10 -1.95 3.78 -26.01 -0.10 -2.05 16 12 C 0.06 1.18 2.07 -88.67 -0.18 0.99 16 13 H 0.03 0.73 8.25 -51.20 -0.42 0.31 16 14 C -0.51 -12.20 7.59 -34.72 -0.26 -12.46 16 15 H 0.06 1.45 7.27 -52.48 -0.38 1.07 16 16 C 0.07 1.63 5.36 -17.82 -0.10 1.54 16 17 N -0.89 -23.15 11.91 55.43 0.66 -22.49 16 18 Si 0.88 19.70 29.54 -169.99 -5.02 14.68 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.04 -0.66 4.25 -86.59 -0.37 -1.03 16 23 H 0.08 1.37 8.20 -51.56 -0.42 0.94 16 24 C -0.08 -1.27 3.97 -85.80 -0.34 -1.61 16 25 H 0.07 1.10 8.13 -52.03 -0.42 0.68 16 26 C -0.08 -1.10 5.75 -91.51 -0.53 -1.62 16 27 H 0.10 1.27 8.15 -51.90 -0.42 0.85 16 28 C -0.24 -3.57 2.36 -115.70 -0.27 -3.84 16 29 H 0.11 1.59 0.01 -60.54 0.00 1.59 16 30 C -0.03 -0.42 4.93 -95.92 -0.47 -0.89 16 31 H 0.08 1.10 8.29 -50.92 -0.42 0.68 16 32 C -0.04 -0.60 7.56 -24.35 -0.18 -0.78 16 33 H 0.13 1.54 8.10 -52.23 -0.42 1.12 16 34 O -0.31 -5.30 14.05 -30.85 -0.43 -5.74 16 35 C 0.07 1.12 7.26 -27.84 -0.20 0.92 16 36 H 0.10 1.66 8.19 -51.61 -0.42 1.24 16 37 C -0.08 -1.40 3.68 -97.86 -0.36 -1.76 16 38 H 0.10 1.86 3.00 -51.27 -0.15 1.71 16 39 C -0.11 -1.23 3.21 -113.47 -0.36 -1.60 16 40 H 0.06 0.74 2.46 -61.72 -0.15 0.59 16 41 C -0.08 -0.99 3.92 -85.94 -0.34 -1.33 16 42 H 0.09 0.94 8.22 -51.37 -0.42 0.52 16 43 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.11 0.96 7.80 -51.93 -0.40 0.56 16 45 H 0.06 0.72 8.14 -51.91 -0.42 0.30 16 46 H 0.08 1.15 5.70 -52.29 -0.30 0.85 16 47 H 0.08 1.79 7.13 -51.61 -0.37 1.42 16 48 H 0.05 0.96 4.27 -52.20 -0.22 0.74 16 49 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -26.96 347.41 -10.82 -37.78 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.60 Total: 5.44 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -5.43 Total: -29.20 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 1.44 Total: -28.20 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.43 Total: -5.74 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.96 -10.82 -37.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254309200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 310.286 kcal (2) G-P(sol) polarization free energy of solvation -26.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 283.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 272.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds