Wall clock time and date at job start Tue Mar 31 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52340 * 109.47176 * 134.63794 * 3 2 1 5 5 H 1.07831 * 113.53066 * 305.69912 * 4 3 2 6 6 C 1.58783 * 111.64098 * 73.55738 * 4 3 2 7 7 C 1.54621 * 106.18534 * 155.71070 * 6 4 3 8 8 H 1.09633 * 109.55662 * 110.02400 * 7 6 4 9 9 C 1.52135 * 118.34820 * 237.19954 * 7 6 4 10 10 H 1.10032 * 107.53221 * 249.56871 * 9 7 6 11 11 C 1.52179 * 119.19300 * 11.56752 * 9 7 6 12 12 C 1.55148 * 103.42281 * 150.68294 * 11 9 7 13 13 H 1.10275 * 109.06974 * 73.34944 * 12 11 9 14 14 C 1.50131 * 112.37859 * 194.51805 * 12 11 9 15 15 H 1.08005 * 119.99952 * 118.54391 * 14 12 11 16 16 C 1.37875 * 120.00222 * 298.55481 * 14 12 11 17 17 N 1.31523 * 119.99933 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00315 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47165 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47474 * 119.99318 * 18 16 14 21 21 H 1.48495 * 109.47547 * 239.99787 * 18 16 14 22 22 C 1.57130 * 103.97048 * 316.80150 * 12 11 9 23 23 H 1.09657 * 114.63175 * 162.60629 * 22 12 11 24 24 C 1.55062 * 109.70397 * 133.97523 * 9 7 6 25 25 H 1.08824 * 112.27083 * 104.63010 * 24 9 7 26 26 C 1.54005 * 104.23456 * 342.50277 * 24 9 7 27 27 H 1.09045 * 117.87120 * 149.56162 * 26 24 9 28 28 C 1.49040 * 94.62343 * 278.38052 * 26 24 9 29 29 H 1.06978 * 90.16561 * 52.91448 * 28 26 24 30 30 C 1.51222 * 119.94190 * 155.88165 * 28 26 24 31 31 H 1.10760 * 117.55936 * 49.79834 * 30 28 26 32 32 C 1.52015 * 94.47104 * 165.08492 * 30 28 26 33 33 H 1.08467 * 118.35562 * 132.58337 * 32 30 28 34 34 O 1.43636 * 115.07108 * 284.74139 * 32 30 28 35 35 C 1.39283 * 67.99694 * 98.93185 * 34 32 30 36 36 H 1.09564 * 111.75096 * 110.77403 * 35 34 32 37 37 C 1.44429 * 138.11151 * 286.52123 * 35 34 32 38 38 H 1.10157 * 96.10832 * 118.38871 * 37 35 34 39 39 C 1.44647 * 82.75260 * 299.56080 * 30 28 26 40 40 H 1.07115 * 98.60624 * 290.43130 * 39 30 28 41 41 C 1.54013 * 109.72499 * 9.10801 * 26 24 9 42 42 H 1.09976 * 114.58411 * 129.28838 * 41 26 24 43 43 H 1.09001 * 109.47539 * 14.63470 * 3 2 1 44 44 H 1.09007 * 109.46784 * 254.63747 * 3 2 1 45 45 H 1.09034 * 108.98852 * 274.21147 * 6 4 3 46 46 H 1.08358 * 109.84696 * 35.39820 * 6 4 3 47 47 H 1.09568 * 110.16915 * 268.11935 * 11 9 7 48 48 H 1.08521 * 112.01882 * 30.46900 * 11 9 7 49 49 H 0.96992 * 119.99711 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1154 1.0100 -1.0220 5 1 2.7150 0.8589 -2.0118 6 6 2.9160 2.5030 -0.5193 7 6 3.9666 3.3542 -1.2693 8 1 3.4629 4.0018 -1.9964 9 6 4.9583 4.1653 -0.4488 10 1 4.7077 5.2284 -0.5824 11 6 5.0631 3.9148 1.0485 12 6 6.5390 4.2687 1.3704 13 1 6.6628 5.3639 1.3348 14 6 6.9653 3.7687 2.7203 15 1 7.7699 3.0528 2.8016 16 6 6.3297 4.2232 3.8562 17 7 5.3501 5.0953 3.7573 18 14 6.8597 3.6006 5.5357 19 1 7.9745 2.6326 5.3756 20 1 7.3124 4.7444 6.3676 21 1 5.7133 2.9292 6.1992 22 6 7.3510 3.6149 0.1948 23 1 8.3714 3.9984 0.0756 24 6 6.3883 3.9717 -1.0164 25 1 6.7284 4.8373 -1.5814 26 6 6.2829 2.7036 -1.8839 27 1 6.9368 2.6248 -2.7530 28 6 6.4152 1.7617 -0.7365 29 1 5.6169 2.2620 -0.2297 30 6 5.8598 0.3593 -0.8433 31 1 6.1291 -0.2316 -1.7405 32 6 6.6176 -0.1609 0.3675 33 1 6.0735 -0.7393 1.1064 34 8 8.0187 -0.3948 0.1542 35 6 7.7828 0.8282 0.7776 36 1 8.1280 0.8271 1.8175 37 6 7.2737 2.1334 0.4267 38 1 6.4132 2.1124 1.1142 39 6 4.6118 1.0649 -1.0352 40 1 4.4934 1.4536 -0.0441 41 6 4.8059 2.2899 -2.0226 42 1 4.4754 2.1133 -3.0565 43 1 2.9719 -0.9935 -0.2596 44 1 2.9712 0.2731 0.9910 45 1 1.9108 2.8343 -0.7813 46 1 3.0647 2.5531 0.5528 47 1 4.3907 4.5877 1.5922 48 1 4.8356 2.8853 1.3057 49 1 4.9032 5.4153 4.5564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254309200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:48 Heat of formation + Delta-G solvation = 260.549387 kcal Electronic energy + Delta-G solvation = -32176.121576 eV Core-core repulsion = 28464.503896 eV Total energy + Delta-G solvation = -3711.617680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.178 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -46.35408 -41.52372 -39.26559 -37.54271 -36.18949 -35.10181 -33.76359 -31.58866 -30.96454 -29.65474 -27.65487 -26.80070 -25.86612 -25.16074 -24.76920 -22.50551 -21.19453 -20.88895 -19.98954 -19.61626 -19.18931 -18.28405 -17.78238 -17.67059 -17.01308 -16.55093 -16.45205 -16.07681 -16.02590 -15.59993 -15.12205 -14.75722 -14.51800 -14.19843 -14.07665 -13.88093 -13.64923 -13.39322 -13.23902 -12.98997 -12.86696 -12.74183 -12.70498 -12.43745 -12.30549 -12.19365 -11.88714 -11.80806 -11.70749 -11.51918 -11.40528 -11.23521 -11.11330 -10.92090 -10.72695 -10.66280 -10.53576 -10.39002 -10.29635 -9.78740 -9.17027 -8.08060 -6.14867 1.39712 1.45319 1.53678 1.83414 1.89130 2.15189 2.36691 2.45444 2.69532 3.05728 3.15397 3.22611 3.41558 3.52784 3.60792 3.75751 3.84751 3.92895 4.05855 4.20892 4.26558 4.34695 4.41922 4.47951 4.50109 4.52617 4.62292 4.66795 4.72373 4.75316 4.83929 4.85362 4.91386 4.93241 4.97256 5.01900 5.06075 5.07448 5.17359 5.19865 5.28534 5.34841 5.37474 5.48964 5.52855 5.55089 5.60703 5.70314 5.73324 5.82027 5.91033 6.01271 6.04931 6.43978 6.67311 6.95772 7.51971 8.99605 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.005681 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.423690 B = 4927.179469 C = 5512.796594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.239 3.761 3 C -0.022 4.022 4 C -0.043 4.043 5 H 0.108 0.892 6 C -0.124 4.124 7 C -0.080 4.080 8 H 0.084 0.916 9 C -0.086 4.086 10 H 0.043 0.957 11 C -0.080 4.080 12 C 0.049 3.951 13 H -0.012 1.012 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.019 3.981 17 N -0.916 5.916 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.283 1.283 22 C -0.039 4.039 23 H 0.069 0.931 24 C -0.080 4.080 25 H 0.082 0.918 26 C -0.073 4.073 27 H 0.115 0.885 28 C -0.243 4.243 29 H 0.103 0.897 30 C -0.017 4.017 31 H 0.102 0.898 32 C -0.020 4.020 33 H 0.157 0.843 34 O -0.327 6.327 35 C 0.038 3.962 36 H 0.086 0.914 37 C -0.085 4.085 38 H 0.079 0.921 39 C -0.092 4.092 40 H 0.037 0.963 41 C -0.072 4.072 42 H 0.121 0.879 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.040 0.960 48 H 0.049 0.951 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -8.927 -12.474 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.077 4.077 3 C -0.062 4.062 4 C -0.063 4.063 5 H 0.126 0.874 6 C -0.161 4.161 7 C -0.098 4.098 8 H 0.103 0.897 9 C -0.104 4.104 10 H 0.061 0.939 11 C -0.118 4.118 12 C 0.031 3.969 13 H 0.006 0.994 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.179 4.179 17 N -0.556 5.556 18 Si 0.764 3.236 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.058 4.058 23 H 0.088 0.912 24 C -0.098 4.098 25 H 0.101 0.899 26 C -0.091 4.091 27 H 0.133 0.867 28 C -0.261 4.261 29 H 0.120 0.880 30 C -0.035 4.035 31 H 0.120 0.880 32 C -0.077 4.077 33 H 0.174 0.826 34 O -0.246 6.246 35 C -0.020 4.020 36 H 0.104 0.896 37 C -0.103 4.103 38 H 0.096 0.904 39 C -0.110 4.110 40 H 0.056 0.944 41 C -0.090 4.090 42 H 0.138 0.862 43 H 0.168 0.832 44 H 0.134 0.866 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.326 -8.922 -12.353 15.597 hybrid contribution 0.808 0.620 1.797 2.066 sum -2.518 -8.303 -10.556 13.664 Atomic orbital electron populations 1.81240 1.14958 1.11083 1.10836 1.29674 0.95617 0.91121 0.91282 1.19532 0.79522 1.04286 1.02830 1.21623 0.93130 0.92319 0.99189 0.87432 1.23391 0.98318 0.94437 0.99974 1.21957 0.94982 0.96063 0.96812 0.89729 1.21627 0.94215 0.99149 0.95446 0.93879 1.21700 0.98955 0.98870 0.92292 1.20326 0.91283 0.93624 0.91699 0.99354 1.21272 1.17198 1.24844 0.91632 0.92476 1.25570 0.95254 0.95291 1.01829 1.70068 1.24245 1.32079 1.29238 0.85811 0.78373 0.78241 0.81128 1.18898 1.21529 1.20896 1.22511 0.97718 0.90005 0.95543 0.91228 1.23578 0.94147 0.97887 0.94213 0.89920 1.21687 0.97530 0.93314 0.96555 0.86731 1.23806 1.07908 0.96055 0.98306 0.87976 1.18298 0.93803 0.93822 0.97583 0.88047 1.24283 0.79933 1.04070 0.99389 0.82618 1.90990 1.20792 1.28618 1.84226 1.21035 0.99895 0.84694 0.96412 0.89624 1.19290 0.98537 0.92294 1.00181 0.90380 1.20251 0.91350 0.97623 1.01793 0.94436 1.24140 0.92656 0.93071 0.99146 0.86153 0.83160 0.86621 0.91675 0.92074 0.94150 0.93244 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -13.83 18.54 20.01 0.37 -13.46 16 2 C 0.24 4.89 15.22 89.44 1.36 6.25 16 3 C -0.02 -0.30 5.18 28.57 0.15 -0.15 16 4 C -0.04 -0.67 2.83 -9.98 -0.03 -0.69 16 5 H 0.11 1.31 7.97 -3.00 -0.02 1.28 16 6 C -0.12 -2.72 5.20 33.22 0.17 -2.54 16 7 C -0.08 -1.88 3.36 -9.82 -0.03 -1.91 16 8 H 0.08 1.79 8.19 -2.05 -0.02 1.77 16 9 C -0.09 -2.72 2.49 -10.64 -0.03 -2.74 16 10 H 0.04 1.45 8.21 -1.84 -0.02 1.44 16 11 C -0.08 -3.26 3.78 31.06 0.12 -3.14 16 12 C 0.05 2.22 2.07 -9.53 -0.02 2.20 16 13 H -0.01 -0.61 8.25 -1.70 -0.01 -0.63 16 14 C -0.51 -25.61 7.59 25.42 0.19 -25.42 16 15 H 0.06 2.84 7.27 -2.91 -0.02 2.82 16 16 C 0.02 1.01 5.36 84.65 0.45 1.46 16 17 N -0.92 -50.30 11.91 21.45 0.26 -50.04 16 18 Si 0.94 41.57 29.54 68.60 2.03 43.60 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.04 -1.45 4.25 -8.18 -0.03 -1.49 16 23 H 0.07 2.59 8.20 -2.04 -0.02 2.57 16 24 C -0.08 -2.42 3.97 -7.67 -0.03 -2.45 16 25 H 0.08 2.36 8.13 -2.48 -0.02 2.34 16 26 C -0.07 -1.78 5.75 -11.37 -0.07 -1.85 16 27 H 0.11 2.49 8.15 -2.36 -0.02 2.47 16 28 C -0.24 -6.63 2.36 -27.04 -0.06 -6.69 16 29 H 0.10 2.89 0.01 -10.48 0.00 2.89 16 30 C -0.02 -0.36 4.93 -14.22 -0.07 -0.43 16 31 H 0.10 2.03 8.29 -1.44 -0.01 2.02 16 32 C -0.02 -0.52 7.56 32.14 0.24 -0.28 16 33 H 0.16 3.12 8.10 -2.67 -0.02 3.10 16 34 O -0.33 -10.42 14.05 -133.29 -1.87 -12.29 16 35 C 0.04 1.23 7.26 29.88 0.22 1.45 16 36 H 0.09 2.97 8.19 -2.09 -0.02 2.95 16 37 C -0.08 -2.91 3.68 -15.49 -0.06 -2.97 16 38 H 0.08 2.96 3.00 -1.77 -0.01 2.96 16 39 C -0.09 -1.73 3.21 -25.60 -0.08 -1.81 16 40 H 0.04 0.87 2.46 -11.59 -0.03 0.84 16 41 C -0.07 -1.42 3.92 -7.76 -0.03 -1.45 16 42 H 0.12 1.76 8.22 -1.87 -0.02 1.75 16 43 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.12 1.60 7.80 -2.38 -0.02 1.58 16 45 H 0.06 1.38 8.14 -2.37 -0.02 1.36 16 46 H 0.06 1.64 5.70 -2.72 -0.02 1.62 16 47 H 0.04 1.92 7.13 -2.08 -0.01 1.91 16 48 H 0.05 1.98 4.27 -2.64 -0.01 1.97 16 49 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -62.62 347.41 4.15 -58.47 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 1.00 Total: 18.38 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 2.36 Total: -44.66 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.63 Total: -63.50 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.87 Total: -12.29 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -62.62 4.15 -58.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254309200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 319.023 kcal (2) G-P(sol) polarization free energy of solvation -62.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 256.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 260.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds