Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47615 * 325.83091 * 3 2 1 5 5 C 1.36931 * 119.99754 * 273.40510 * 4 3 2 6 6 H 1.08005 * 119.99695 * 186.54169 * 5 4 3 7 7 C 1.38810 * 120.00582 * 6.53789 * 5 4 3 8 8 N 1.31626 * 119.99705 * 24.53414 * 7 5 4 9 9 Si 1.86797 * 120.00521 * 204.53564 * 7 5 4 10 10 H 1.48506 * 109.46868 * 84.92624 * 9 7 5 11 11 H 1.48499 * 109.47255 * 204.92496 * 9 7 5 12 12 H 1.48495 * 109.47296 * 324.92899 * 9 7 5 13 13 S 1.65599 * 119.99859 * 93.40274 * 4 3 2 14 14 O 1.42095 * 106.40036 * 156.46113 * 13 4 3 15 15 O 1.42103 * 106.40288 * 23.54166 * 13 4 3 16 16 C 1.76197 * 107.21679 * 270.00254 * 13 4 3 17 17 C 1.38253 * 119.88838 * 270.01991 * 16 13 4 18 18 C 1.38351 * 120.21742 * 180.02562 * 17 16 13 19 19 C 1.38466 * 119.71207 * 359.93227 * 18 17 16 20 20 C 1.38750 * 120.06394 * 0.03083 * 19 18 17 21 21 C 1.38341 * 119.89573 * 90.00595 * 16 13 4 22 22 O 1.36472 * 119.61172 * 179.97438 * 20 19 18 23 23 C 1.42733 * 115.86704 * 68.25672 * 22 20 19 24 24 C 1.52062 * 110.87424 * 275.53109 * 23 22 20 25 25 C 1.52068 * 112.29935 * 64.86796 * 24 23 22 26 26 O 1.36468 * 120.31751 * 180.02562 * 19 18 17 27 27 H 1.09005 * 109.46720 * 205.83128 * 3 2 1 28 28 H 1.08996 * 109.47410 * 85.83524 * 3 2 1 29 29 H 0.97002 * 120.00251 * 179.97438 * 8 7 5 30 30 H 1.07992 * 119.89471 * 0.02562 * 17 16 13 31 31 H 1.08000 * 120.14297 * 179.97438 * 18 17 16 32 32 H 1.07999 * 120.14203 * 0.02562 * 21 16 13 33 33 H 1.09002 * 109.07942 * 155.22390 * 23 22 20 34 34 H 1.08998 * 109.24884 * 35.95230 * 23 22 20 35 35 H 1.09001 * 108.90144 * 304.17192 * 24 23 22 36 36 H 1.09002 * 108.89951 * 185.56356 * 24 23 22 37 37 H 1.08999 * 109.21708 * 55.57203 * 25 24 23 38 38 H 1.09001 * 109.21162 * 174.90320 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1419 0.7757 5 6 3.2587 -1.0304 2.1309 6 1 3.7176 -1.8340 2.6878 7 6 2.8332 0.1154 2.7888 8 7 1.8809 0.8589 2.2665 9 14 3.6119 0.6021 4.4155 10 1 4.8505 1.3799 4.1582 11 1 2.6575 1.4337 5.1920 12 1 3.9467 -0.6202 5.1895 13 16 3.4539 -2.5681 0.0137 14 8 4.3787 -3.2494 0.8501 15 8 3.7266 -2.2414 -1.3421 16 6 1.9826 -3.5376 0.0056 17 6 1.7198 -4.3997 1.0539 18 6 0.5669 -5.1645 1.0543 19 6 -0.3249 -5.0621 0.0000 20 6 -0.0614 -4.1962 -1.0517 21 6 1.0940 -3.4333 -1.0495 22 8 -0.9465 -4.1030 -2.0863 23 6 -2.2077 -3.5115 -1.7755 24 6 -3.1637 -4.5447 -1.2001 25 6 -2.6891 -5.0874 0.1388 26 8 -1.4661 -5.8103 -0.0120 27 1 2.9708 0.9259 0.4478 28 1 2.9714 -0.0738 -1.0249 29 1 1.5832 1.6594 2.7264 30 1 2.4168 -4.4765 1.8753 31 1 0.3631 -5.8379 1.8736 32 1 1.3005 -2.7596 -1.8679 33 1 -2.6381 -3.0916 -2.6846 34 1 -2.0609 -2.7138 -1.0473 35 1 -3.2550 -5.3719 -1.9040 36 1 -4.1429 -4.0845 -1.0675 37 1 -2.5323 -4.2571 0.8273 38 1 -3.4507 -5.7519 0.5468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299601427.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = -71.465383 kcal Electronic energy + Delta-G solvation = -28104.048579 eV Core-core repulsion = 24040.552415 eV Total energy + Delta-G solvation = -4063.496164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.081 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.68627 -37.39580 -37.33490 -36.82997 -36.10102 -34.68595 -34.55946 -32.88655 -31.84963 -30.47571 -28.97256 -27.62375 -26.54697 -24.23139 -22.98226 -22.05629 -21.59478 -18.89865 -18.56592 -18.05848 -17.42402 -16.89565 -16.64544 -16.25079 -15.73026 -15.39029 -15.29449 -14.78362 -14.54714 -14.09932 -13.95141 -13.78835 -13.62860 -13.48926 -13.11133 -12.80659 -12.47113 -11.97791 -11.90246 -11.81700 -11.57924 -11.51583 -11.35168 -11.17273 -10.99232 -10.95372 -10.84929 -10.66889 -10.46595 -10.38656 -10.25719 -10.18838 -9.90970 -9.63300 -8.73683 -8.58137 -8.36163 -6.87423 -4.20936 1.02038 1.42896 1.49239 2.99962 3.07515 3.11176 3.33341 3.51669 3.59800 3.86409 4.01265 4.04762 4.40648 4.49627 4.57007 4.65140 4.83296 4.98952 5.03771 5.21361 5.22215 5.30087 5.34551 5.40677 5.54321 5.61072 5.68829 5.75134 5.86232 5.99889 6.12613 6.14405 6.40403 6.45666 6.53696 6.77328 6.80894 7.06506 7.16737 7.70192 7.93792 8.33470 8.75287 8.76005 10.11575 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.004711 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.048382 B = 5942.471854 C = 6271.395601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.243 3.757 3 C 0.223 3.777 4 N -0.797 5.797 5 C -0.247 4.247 6 H 0.129 0.871 7 C 0.031 3.969 8 N -0.837 5.837 9 Si 0.939 3.061 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.263 1.263 13 S 2.542 3.458 14 O -0.972 6.972 15 O -0.989 6.989 16 C -0.655 4.655 17 C -0.015 4.015 18 C -0.142 4.142 19 C 0.095 3.905 20 C 0.041 3.959 21 C -0.023 4.023 22 O -0.319 6.319 23 C 0.056 3.944 24 C -0.184 4.184 25 C 0.060 3.940 26 O -0.324 6.324 27 H 0.136 0.864 28 H 0.103 0.897 29 H 0.282 0.718 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -3.493 -1.263 6.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.075 4.075 3 C 0.093 3.907 4 N -0.621 5.621 5 C -0.393 4.393 6 H 0.147 0.853 7 C -0.181 4.181 8 N -0.476 5.476 9 Si 0.763 3.237 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.187 1.187 13 S 2.640 3.360 14 O -0.962 6.962 15 O -0.978 6.978 16 C -0.732 4.732 17 C -0.034 4.034 18 C -0.161 4.161 19 C 0.051 3.949 20 C -0.003 4.003 21 C -0.043 4.043 22 O -0.235 6.235 23 C -0.019 4.019 24 C -0.222 4.222 25 C -0.015 4.015 26 O -0.240 6.240 27 H 0.153 0.847 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.249 -4.068 -2.024 7.727 hybrid contribution -0.724 0.223 1.145 1.373 sum -6.974 -3.845 -0.879 8.012 Atomic orbital electron populations 1.80841 1.13717 1.08977 1.12325 1.29533 0.95648 0.92431 0.89938 1.19078 0.81171 0.93764 0.96679 1.55394 1.71823 1.18796 1.16044 1.20226 1.31381 1.04447 0.83277 0.85329 1.25597 0.94886 0.97331 1.00257 1.69937 1.22110 1.15821 1.39769 0.85717 0.78987 0.79377 0.79586 1.19317 1.20761 1.18722 1.10996 0.77990 0.73206 0.73857 1.93387 1.61470 1.73964 1.67365 1.93381 1.85411 1.83276 1.35770 1.32478 1.25999 1.14603 1.00131 1.20833 0.94941 0.91250 0.96349 1.21181 0.95792 1.01854 0.97305 1.19264 0.88691 0.93184 0.93755 1.19186 0.92973 0.98505 0.89677 1.20746 0.91901 0.94975 0.96638 1.86330 1.24507 1.80610 1.32066 1.22603 0.83005 0.94355 1.01954 1.22456 1.00226 1.00884 0.98616 1.22611 0.85308 0.97121 0.96435 1.86296 1.12229 1.33041 1.92458 0.84664 0.87947 0.90643 0.83782 0.84733 0.84161 0.88063 0.92002 0.90024 0.89323 0.92295 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.78 18.54 42.15 0.78 -10.00 16 2 C 0.24 5.16 13.34 -20.76 -0.28 4.89 16 3 C 0.22 4.30 5.45 -6.83 -0.04 4.26 16 4 N -0.80 -16.71 2.88 -62.77 -0.18 -16.89 16 5 C -0.25 -5.32 9.48 -15.06 -0.14 -5.46 16 6 H 0.13 2.73 7.22 -52.48 -0.38 2.35 16 7 C 0.03 0.65 4.95 -17.43 -0.09 0.56 16 8 N -0.84 -18.19 8.92 55.49 0.49 -17.70 16 9 Si 0.94 16.80 29.62 -169.99 -5.03 11.76 16 10 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 11 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 12 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 13 S 2.54 54.00 5.65 -107.50 -0.61 53.40 16 14 O -0.97 -22.27 16.05 -57.17 -0.92 -23.19 16 15 O -0.99 -21.90 15.85 -57.17 -0.91 -22.81 16 16 C -0.65 -13.32 5.98 -39.54 -0.24 -13.56 16 17 C -0.01 -0.27 9.51 -39.53 -0.38 -0.65 16 18 C -0.14 -2.47 10.01 -39.46 -0.39 -2.86 16 19 C 0.10 1.74 5.73 -39.31 -0.23 1.51 16 20 C 0.04 0.79 5.72 -39.31 -0.23 0.56 16 21 C -0.02 -0.46 9.47 -39.46 -0.37 -0.84 16 22 O -0.32 -5.73 10.16 -36.71 -0.37 -6.10 16 23 C 0.06 0.79 6.49 36.68 0.24 1.03 16 24 C -0.18 -2.14 5.93 -27.68 -0.16 -2.30 16 25 C 0.06 0.77 6.51 36.68 0.24 1.00 16 26 O -0.32 -5.32 10.16 -36.70 -0.37 -5.69 16 27 H 0.14 2.53 6.39 -51.93 -0.33 2.19 16 28 H 0.10 1.73 6.94 -51.93 -0.36 1.37 16 29 H 0.28 5.91 8.31 -40.82 -0.34 5.57 16 30 H 0.14 2.50 7.60 -52.49 -0.40 2.10 16 31 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.14 2.75 7.62 -52.49 -0.40 2.35 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -28.76 338.30 -8.02 -36.78 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.94 Total: 7.18 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.06 Total: -11.85 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 1.10 Total: -44.58 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -2.57 Total: -57.79 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.76 kcal Atomic # 16 Polarization: 54.00 SS G_CDS: -0.61 Total: 53.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.76 -8.02 -36.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299601427.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.682 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds