Wall clock time and date at job start Tue Mar 31 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46948 * 50.96565 * 3 2 1 5 5 N 1.46498 * 109.46727 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99759 * 269.99882 * 5 4 3 7 7 C 1.50700 * 109.47366 * 269.99854 * 6 5 4 8 8 H 1.08008 * 119.99552 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00353 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00010 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46842 * 60.00498 * 11 9 7 13 13 H 1.48500 * 109.46893 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47207 * 300.00670 * 11 9 7 15 15 C 1.34773 * 120.00133 * 90.00283 * 5 4 3 16 16 O 1.21280 * 120.00231 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99982 * 359.97438 * 15 5 4 18 18 N 1.46896 * 109.47021 * 185.80435 * 17 15 5 19 19 C 1.47886 * 110.99893 * 75.59675 * 18 17 15 20 20 C 1.54594 * 102.64288 * 94.53872 * 19 18 17 21 21 C 1.51619 * 102.75261 * 25.58767 * 20 19 18 22 22 C 1.37467 * 131.45623 * 163.79308 * 21 20 19 23 23 C 1.39822 * 119.95490 * 180.17247 * 22 21 20 24 24 C 1.43206 * 120.21738 * 180.21028 * 23 22 21 25 25 N 9.88964 * 97.78262 * 333.36401 * 2 1 3 26 26 C 1.39822 * 119.56191 * 0.47751 * 23 22 21 27 27 C 1.37426 * 120.11334 * 359.34479 * 26 23 22 28 28 C 1.39264 * 107.89034 * 343.95850 * 21 20 19 29 29 H 1.08996 * 109.46906 * 290.96764 * 3 2 1 30 30 H 1.09002 * 109.46541 * 170.96350 * 3 2 1 31 31 H 1.08993 * 109.46865 * 59.99933 * 4 3 2 32 32 H 1.08998 * 109.46762 * 300.00022 * 4 3 2 33 33 H 1.08997 * 109.47597 * 30.00516 * 6 5 4 34 34 H 1.09002 * 109.46990 * 150.00210 * 6 5 4 35 35 H 0.97000 * 120.00194 * 179.97438 * 10 9 7 36 36 H 1.08993 * 109.46710 * 65.80383 * 17 15 5 37 37 H 1.09007 * 109.46952 * 305.80624 * 17 15 5 38 38 H 1.09005 * 110.77175 * 212.82840 * 19 18 17 39 39 H 1.08999 * 110.77639 * 336.24637 * 19 18 17 40 40 H 1.09011 * 110.75915 * 143.90054 * 20 19 18 41 41 H 1.08997 * 110.75940 * 267.08628 * 20 19 18 42 42 H 1.08000 * 120.02206 * 0.43460 * 22 21 20 43 43 H 1.08003 * 119.94101 * 179.61588 * 26 23 22 44 44 H 1.08001 * 119.79651 * 180.34476 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9076 -1.1205 5 7 4.5834 -0.9065 -1.1209 6 6 5.3149 0.0795 -1.9203 7 6 5.5662 -0.4774 -3.2979 8 1 5.2156 -1.4667 -3.5526 9 6 6.2426 0.2764 -4.2334 10 7 6.6690 1.4813 -3.9234 11 14 6.5535 -0.4137 -5.9412 12 1 5.2558 -0.7177 -6.5959 13 1 7.2951 0.5857 -6.7514 14 1 7.3571 -1.6578 -5.8337 15 6 5.2582 -1.8125 -0.3859 16 8 6.4710 -1.8112 -0.3858 17 6 4.5057 -2.8264 0.4368 18 7 5.4550 -3.6019 1.2462 19 6 5.9408 -2.8101 2.3969 20 6 4.9826 -3.2393 3.5317 21 6 4.5395 -4.6207 3.0909 22 6 3.9312 -5.6439 3.7785 23 6 3.6266 -6.8410 3.1234 24 6 2.9889 -7.9089 3.8331 25 7 2.4752 -8.7587 4.3929 26 6 3.9539 -6.9906 1.7723 27 6 4.5586 -5.9615 1.0913 28 6 4.8581 -4.7623 1.7426 29 1 2.9715 -0.3669 0.9596 30 1 2.9708 1.0158 -0.1614 31 1 2.7549 -0.5401 -2.0801 32 1 2.7555 -1.9227 -0.9591 33 1 4.7251 0.9927 -1.9995 34 1 6.2672 0.3027 -1.4393 35 1 7.1452 2.0115 -4.5814 36 1 3.9593 -3.4980 -0.2253 37 1 3.8034 -2.3126 1.0933 38 1 6.9704 -3.0729 2.6400 39 1 5.8500 -1.7423 2.1974 40 1 5.5098 -3.2886 4.4845 41 1 4.1325 -2.5604 3.5970 42 1 3.6849 -5.5216 4.8229 43 1 3.7270 -7.9150 1.2619 44 1 4.8040 -6.0806 0.0463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328599696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:08 Heat of formation + Delta-G solvation = 71.837744 kcal Electronic energy + Delta-G solvation = -28057.742826 eV Core-core repulsion = 24168.975740 eV Total energy + Delta-G solvation = -3888.767086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.28484 -39.26202 -37.72678 -36.90332 -36.01958 -35.25486 -33.05650 -32.68777 -30.93607 -30.73480 -29.41504 -28.12718 -26.31145 -24.09490 -23.85321 -22.99498 -22.37478 -21.29036 -18.76230 -18.50069 -17.67438 -17.24031 -16.67346 -16.47718 -16.21805 -15.73182 -15.28709 -14.78303 -14.73375 -14.52717 -14.25980 -14.16340 -13.97768 -13.78567 -13.62688 -13.39969 -13.09914 -12.89633 -12.76066 -12.59878 -12.49273 -12.42460 -12.29839 -12.12238 -11.94719 -11.70963 -11.44377 -11.32524 -11.18882 -11.05665 -10.91805 -10.65182 -10.23243 -9.91630 -9.76827 -9.26880 -8.98829 -8.50659 -8.13996 -7.91945 -6.12711 -4.17427 0.40568 0.98402 2.36482 2.55938 2.65597 2.74042 3.16060 3.20673 3.28103 3.33187 3.36642 3.50961 3.56027 3.69216 4.08561 4.28008 4.38833 4.45769 4.58482 4.73830 4.80605 4.87700 4.90364 4.99201 5.02748 5.13202 5.20940 5.22914 5.28370 5.36634 5.41605 5.54476 5.59291 5.71954 5.73369 5.87835 5.94130 5.97691 6.04547 6.24420 6.55996 6.84199 6.95974 7.21377 7.28354 7.36447 7.50357 7.83069 8.12229 8.17081 8.78115 8.92148 9.48394 10.95360 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002905 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.669904 B = 9634.903364 C =10594.130412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.215 3.785 3 C -0.050 4.050 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.247 3.753 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.506 3.494 16 O -0.509 6.509 17 C 0.036 3.964 18 N -0.473 5.473 19 C 0.058 3.942 20 C -0.112 4.112 21 C -0.145 4.145 22 C -0.036 4.036 23 C -0.053 4.053 24 C 0.261 3.739 25 N -0.428 5.428 26 C -0.049 4.049 27 C -0.116 4.116 28 C 0.135 3.865 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -8.562 13.986 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.331 5.331 6 C 0.128 3.872 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.291 3.709 16 O -0.383 6.383 17 C -0.092 4.092 18 N -0.188 5.188 19 C -0.068 4.068 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.057 4.057 23 C -0.057 4.057 24 C -0.054 4.054 25 N -0.103 5.103 26 C -0.070 4.070 27 C -0.136 4.136 28 C 0.036 3.964 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.383 -9.745 14.377 18.504 hybrid contribution 0.218 0.202 -0.815 0.868 sum -6.165 -9.543 13.562 17.692 Atomic orbital electron populations 1.81225 1.13036 1.08982 1.08764 1.29091 0.95094 0.93035 0.93089 1.19902 0.81403 1.05306 1.02549 1.21315 0.82334 0.98787 0.98592 1.48231 1.04737 1.33907 1.46219 1.19342 0.92569 0.85706 0.89558 1.21365 1.36930 1.01976 0.96563 0.92411 1.24905 0.95264 0.94819 0.98918 1.69900 1.38199 1.09876 1.35269 0.86585 0.78409 0.78879 0.83728 1.20257 1.21221 1.20121 1.20066 0.88294 0.81856 0.80697 1.90724 1.13322 1.70599 1.63620 1.22300 0.93352 0.96537 0.97006 1.59336 1.33926 1.03910 1.21638 1.23199 0.99405 0.98374 0.85842 1.21792 1.00174 0.92246 1.00793 1.20915 1.01366 0.96593 0.95885 1.20281 0.95696 0.90249 0.99513 1.15802 1.05752 0.90927 0.93269 1.25803 0.93162 0.93027 0.93375 1.81426 1.10019 1.10204 1.08668 1.20916 0.95413 0.98825 0.91839 1.20491 1.01130 0.90702 1.01242 1.19884 0.91475 0.92348 0.92679 0.87847 0.86358 0.88558 0.90811 0.94709 0.93537 0.92588 0.87740 0.91211 0.88614 0.89023 0.89062 0.89654 0.85195 0.84515 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.08 18.54 42.16 0.78 -5.30 16 2 C 0.22 2.34 15.43 -20.76 -0.32 2.02 16 3 C -0.05 -0.44 5.97 -29.51 -0.18 -0.62 16 4 C 0.12 1.35 5.09 -4.04 -0.02 1.33 16 5 N -0.60 -9.82 2.46 -175.06 -0.43 -10.25 16 6 C 0.25 5.47 5.16 -5.20 -0.03 5.44 16 7 C -0.53 -13.52 9.39 -34.44 -0.32 -13.84 16 8 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 11 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.51 8.26 7.13 -10.99 -0.08 8.18 16 16 O -0.51 -10.81 15.54 5.56 0.09 -10.72 16 17 C 0.04 0.41 3.70 -4.98 -0.02 0.39 16 18 N -0.47 -5.49 4.58 -170.34 -0.78 -6.27 16 19 C 0.06 0.57 6.35 -2.44 -0.02 0.55 16 20 C -0.11 -0.78 6.93 -26.59 -0.18 -0.97 16 21 C -0.14 -1.19 6.21 -104.07 -0.65 -1.84 16 22 C -0.04 -0.27 9.74 -39.27 -0.38 -0.65 16 23 C -0.05 -0.43 5.74 -106.78 -0.61 -1.04 16 24 C 0.26 2.53 15.35 -22.34 -0.34 2.19 16 25 N -0.43 -5.16 18.56 41.99 0.78 -4.38 16 26 C -0.05 -0.36 9.73 -39.28 -0.38 -0.74 16 27 C -0.12 -0.99 10.02 -39.32 -0.39 -1.38 16 28 C 0.13 1.31 5.49 -83.38 -0.46 0.86 16 29 H 0.10 0.68 7.12 -51.93 -0.37 0.31 16 30 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 32 H 0.07 0.69 6.60 -51.93 -0.34 0.35 16 33 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.05 1.19 7.42 -51.93 -0.39 0.80 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.10 1.06 7.50 -51.93 -0.39 0.67 16 37 H 0.07 0.58 6.68 -51.93 -0.35 0.24 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 0.93 7.29 -51.93 -0.38 0.55 16 40 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -33.43 388.33 -8.03 -41.46 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.56 Total: -3.50 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -4.48 Total: 1.47 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 1.09 Total: -50.19 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.43 -8.03 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328599696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.303 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds