Wall clock time and date at job start Tue Mar 31 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46913 * 2 1 4 4 C 1.46896 * 110.99948 * 170.00002 * 3 2 1 5 5 C 1.53247 * 109.34037 * 187.25191 * 4 3 2 6 6 N 1.47080 * 108.51887 * 306.17109 * 5 4 3 7 7 C 1.34781 * 120.87828 * 231.18625 * 6 5 4 8 8 O 1.21272 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99830 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47233 * 179.97438 * 9 7 6 11 11 C 1.53039 * 109.45914 * 295.03197 * 10 9 7 12 12 C 1.53196 * 109.30822 * 178.59679 * 11 10 9 13 13 N 1.46928 * 108.76522 * 54.65512 * 12 11 10 14 14 C 1.34785 * 120.62983 * 126.35814 * 13 12 11 15 15 O 1.21685 * 119.99504 * 174.75985 * 14 13 12 16 16 C 1.46369 * 119.99793 * 354.75664 * 14 13 12 17 17 H 1.07997 * 120.00589 * 5.68270 * 16 14 13 18 18 C 1.40052 * 119.99918 * 185.67734 * 16 14 13 19 19 N 1.30675 * 119.99815 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00465 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46603 * 60.00432 * 20 18 16 22 22 H 1.48498 * 109.47123 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46870 * 300.00673 * 20 18 16 24 24 C 1.46925 * 118.73811 * 306.38200 * 13 12 11 25 25 C 1.53034 * 109.46204 * 174.97146 * 10 9 7 26 26 C 1.47080 * 118.24023 * 51.45673 * 6 5 4 27 27 C 1.46902 * 110.99691 * 294.30184 * 3 2 1 28 28 H 1.08998 * 109.47307 * 60.00484 * 1 2 3 29 29 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47546 * 300.00333 * 1 2 3 31 31 H 1.08997 * 109.47146 * 239.99861 * 2 1 3 32 32 H 1.08998 * 109.47307 * 119.99516 * 2 1 3 33 33 H 1.09001 * 109.49632 * 67.29622 * 4 3 2 34 34 H 1.08995 * 109.49661 * 307.20932 * 4 3 2 35 35 H 1.08996 * 109.63160 * 186.45982 * 5 4 3 36 36 H 1.09005 * 109.62760 * 65.87648 * 5 4 3 37 37 H 1.08999 * 109.47271 * 299.99796 * 9 7 6 38 38 H 1.09004 * 109.47222 * 60.00085 * 9 7 6 39 39 H 1.09004 * 109.45522 * 54.99731 * 10 9 7 40 40 H 1.09003 * 109.49860 * 298.55790 * 11 10 9 41 41 H 1.09000 * 109.49953 * 58.66108 * 11 10 9 42 42 H 1.08998 * 109.60167 * 294.86386 * 12 11 10 43 43 H 1.09004 * 109.58279 * 174.42782 * 12 11 10 44 44 H 0.96995 * 120.00379 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.58328 * 293.81936 * 24 13 12 46 46 H 1.08996 * 109.70327 * 173.46929 * 24 13 12 47 47 H 1.09000 * 109.50154 * 301.33843 * 25 10 9 48 48 H 1.09003 * 109.49601 * 61.40434 * 25 10 9 49 49 H 1.08998 * 109.62579 * 68.25038 * 26 6 5 50 50 H 1.08996 * 109.62766 * 188.83346 * 26 6 5 51 51 H 1.09008 * 109.49392 * 292.70201 * 27 3 2 52 52 H 1.08996 * 109.49740 * 52.78825 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4312 0.2381 5 6 3.9081 2.8890 0.4109 6 7 3.4445 3.6580 -0.7540 7 6 4.2946 4.4378 -1.4509 8 8 5.4588 4.5126 -1.1198 9 6 3.7981 5.2177 -2.6410 10 6 4.9549 6.0149 -3.2470 11 6 5.4306 7.0668 -2.2424 12 6 6.6113 7.8394 -2.8389 13 7 6.2080 8.3877 -4.1410 14 6 6.3458 9.7023 -4.4050 15 8 6.0982 10.1285 -5.5175 16 6 6.7931 10.6169 -3.3535 17 1 7.1005 10.2279 -2.3941 18 6 6.8225 11.9968 -3.5915 19 7 6.4502 12.4676 -4.7522 20 14 7.3927 13.1643 -2.2494 21 1 8.7901 12.8360 -1.8687 22 1 7.3304 14.5612 -2.7492 23 1 6.5104 13.0235 -1.0633 24 6 5.6513 7.4759 -5.1496 25 6 4.4816 6.7071 -4.5271 26 6 2.0273 3.5581 -1.1345 27 6 1.6629 2.0694 -1.2499 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9909 0.9920 -0.6117 34 1 3.7066 0.8700 1.1416 35 1 4.9952 2.9387 0.4734 36 1 3.4672 3.2992 1.3195 37 1 3.4010 4.5290 -3.3868 38 1 3.0119 5.9030 -2.3241 39 1 5.7774 5.3394 -3.4823 40 1 4.6157 7.7577 -2.0257 41 1 5.7456 6.5749 -1.3222 42 1 7.4586 7.1668 -2.9722 43 1 6.8903 8.6538 -2.1701 44 1 6.4702 13.4233 -4.9170 45 1 6.4203 6.7736 -5.4714 46 1 5.2974 8.0483 -6.0070 47 1 4.1210 5.9592 -5.2333 48 1 3.6753 7.4009 -4.2888 49 1 1.4091 4.0314 -0.3716 50 1 1.8703 4.0503 -2.0943 51 1 2.2106 1.6213 -2.0791 52 1 0.5917 1.9710 -1.4257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408322920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:21 Heat of formation + Delta-G solvation = -66.248046 kcal Electronic energy + Delta-G solvation = -30073.601416 eV Core-core repulsion = 26072.796567 eV Total energy + Delta-G solvation = -4000.804849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.55494 -38.92200 -38.06441 -35.92600 -35.23250 -32.99187 -32.41811 -31.81108 -30.98005 -30.41442 -28.60725 -26.83377 -26.08660 -24.27953 -23.36174 -22.48872 -22.27826 -21.25108 -20.21198 -19.00602 -18.75629 -17.30669 -16.50883 -16.23342 -15.89692 -15.69318 -15.59882 -15.47863 -15.06721 -14.45084 -14.34691 -14.16704 -14.14004 -13.75694 -13.73907 -13.32353 -12.90691 -12.74466 -12.66289 -12.50125 -12.31466 -12.18981 -11.87340 -11.83866 -11.71738 -11.54937 -11.43502 -11.34550 -11.15729 -11.06430 -10.89586 -10.58787 -10.48861 -10.40587 -10.17398 -10.10799 -9.66467 -9.46085 -9.08130 -8.79473 -8.67211 -7.50357 -7.09876 -6.13913 -4.57762 2.57483 2.73447 3.19377 3.23899 3.25988 3.38404 4.14221 4.28819 4.40738 4.48889 4.61216 4.67141 4.68117 4.70130 4.82086 4.90680 4.96037 4.97737 5.01933 5.04066 5.12317 5.18762 5.33994 5.36882 5.43938 5.49871 5.52169 5.58421 5.63635 5.66646 5.75156 5.79777 5.86009 5.95634 6.03716 6.15991 6.24313 6.34394 6.51603 6.54761 6.56060 6.59441 6.63200 6.68090 6.70327 6.96279 7.22664 7.52279 7.74785 8.11227 8.23012 8.45132 9.08287 9.53166 10.64324 10.83300 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.002147 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.037197 B =13036.869759 C =13526.767437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.042 3.958 5 C 0.116 3.884 6 N -0.622 5.622 7 C 0.517 3.483 8 O -0.529 6.529 9 C -0.135 4.135 10 C -0.067 4.067 11 C -0.131 4.131 12 C 0.124 3.876 13 N -0.642 5.642 14 C 0.560 3.440 15 O -0.581 6.581 16 C -0.544 4.544 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.770 5.770 20 Si 0.905 3.095 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 C 0.122 3.878 25 C -0.126 4.126 26 C 0.112 3.888 27 C 0.037 3.963 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.091 0.909 44 H 0.268 0.732 45 H 0.039 0.961 46 H 0.082 0.918 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.039 0.961 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.337 -24.624 10.464 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.086 4.086 5 C -0.007 4.007 6 N -0.357 5.357 7 C 0.306 3.694 8 O -0.405 6.405 9 C -0.174 4.174 10 C -0.086 4.086 11 C -0.170 4.170 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.366 3.634 15 O -0.464 6.464 16 C -0.581 4.581 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.399 5.399 20 Si 0.730 3.270 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.002 4.002 25 C -0.165 4.165 26 C -0.012 4.012 27 C -0.092 4.092 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.057 0.943 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.081 -23.907 10.263 28.685 hybrid contribution 0.451 -0.100 0.125 0.479 sum -11.629 -24.007 10.388 28.627 Atomic orbital electron populations 1.21814 0.94628 1.01688 1.02605 1.22080 0.96286 0.88495 1.00869 1.61978 1.13730 1.15878 1.34830 1.22494 0.87486 0.97300 1.01365 1.21639 1.01191 0.89517 0.88312 1.48251 1.09751 1.46901 1.30815 1.20912 0.85640 0.78772 0.84058 1.90676 1.17324 1.63543 1.68955 1.21830 1.00991 0.99201 0.95417 1.20888 0.95924 0.96422 0.95367 1.22086 0.99423 0.96918 0.98549 1.21389 0.94603 0.97442 0.86568 1.48176 1.68062 1.08304 1.13527 1.18217 0.77515 0.78961 0.88686 1.90576 1.55928 1.75379 1.24547 1.20965 1.47064 0.90712 0.99351 0.90950 1.25727 0.93150 0.98777 0.95523 1.70009 1.34778 1.13664 1.21422 0.86474 0.79919 0.79090 0.81528 1.19236 1.20608 1.19285 1.21063 0.93707 0.92268 0.93195 1.21979 0.99403 0.98940 0.96141 1.21932 0.81616 0.95820 1.01783 1.22641 1.01643 0.94354 0.90540 0.92581 0.92228 0.91690 0.94925 0.90642 0.94382 0.89570 0.88554 0.90900 0.89344 0.88922 0.90846 0.92425 0.90382 0.94182 0.89104 0.92139 0.94293 0.89961 0.92267 0.91812 0.90436 0.89022 0.94276 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.84 37.16 0.37 -0.33 16 2 C 0.05 0.28 5.68 -3.82 -0.02 0.26 16 3 N -0.54 -3.72 4.63 -234.02 -1.08 -4.80 16 4 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 5 C 0.12 1.05 6.60 -3.60 -0.02 1.03 16 6 N -0.62 -6.12 3.00 -172.17 -0.52 -6.63 16 7 C 0.52 6.46 7.42 -10.98 -0.08 6.38 16 8 O -0.53 -8.51 13.42 5.56 0.07 -8.43 16 9 C -0.13 -1.51 3.54 -27.88 -0.10 -1.61 16 10 C -0.07 -0.99 1.80 -90.58 -0.16 -1.15 16 11 C -0.13 -2.25 5.11 -26.61 -0.14 -2.39 16 12 C 0.12 2.53 6.35 -3.71 -0.02 2.50 16 13 N -0.64 -15.28 2.97 -174.43 -0.52 -15.80 16 14 C 0.56 16.44 7.61 -12.99 -0.10 16.34 16 15 O -0.58 -19.23 14.48 5.20 0.08 -19.16 16 16 C -0.54 -15.67 8.88 -35.63 -0.32 -15.99 16 17 H 0.07 1.92 5.64 -52.49 -0.30 1.62 16 18 C 0.09 2.49 5.50 -17.36 -0.10 2.40 16 19 N -0.77 -23.44 11.84 55.55 0.66 -22.78 16 20 Si 0.91 20.53 29.56 -169.99 -5.02 15.50 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 C 0.12 2.47 6.41 -3.71 -0.02 2.45 16 25 C -0.13 -1.98 5.36 -26.62 -0.14 -2.12 16 26 C 0.11 0.79 6.53 -3.36 -0.02 0.77 16 27 C 0.04 0.24 5.48 -3.46 -0.02 0.22 16 28 H 0.06 0.25 6.40 -51.93 -0.33 -0.08 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.19 8.12 -51.93 -0.42 -0.23 16 32 H 0.08 0.38 7.97 -51.93 -0.41 -0.03 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.51 7.99 -51.93 -0.41 0.10 16 35 H 0.10 1.00 7.06 -51.93 -0.37 0.63 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 38 H 0.09 0.95 7.99 -51.93 -0.41 0.54 16 39 H 0.07 1.16 7.96 -51.93 -0.41 0.74 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.34 5.93 -51.93 -0.31 1.03 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.94 5.30 -51.93 -0.28 1.67 16 44 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.85 7.04 -51.93 -0.37 1.49 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.54 6.02 -51.93 -0.31 0.22 16 51 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 52 H 0.09 0.45 6.16 -51.93 -0.32 0.13 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -36.46 394.06 -10.16 -46.61 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.84 Total: 0.51 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -0.92 Total: 9.05 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -1.46 Total: -50.02 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: 0.15 Total: -27.59 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.46 -10.16 -46.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408322920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.636 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds