Wall clock time and date at job start Tue Mar 31 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46913 * 2 1 4 4 C 1.46896 * 110.99948 * 170.00002 * 3 2 1 5 5 C 1.53247 * 109.34037 * 187.25191 * 4 3 2 6 6 N 1.47080 * 108.51887 * 306.17109 * 5 4 3 7 7 C 1.34781 * 120.87828 * 231.18625 * 6 5 4 8 8 O 1.21272 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99830 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47233 * 179.97438 * 9 7 6 11 11 C 1.53039 * 109.45914 * 295.03197 * 10 9 7 12 12 C 1.53196 * 109.30822 * 178.59679 * 11 10 9 13 13 N 1.46928 * 108.76522 * 54.65512 * 12 11 10 14 14 C 1.34785 * 120.62983 * 126.35814 * 13 12 11 15 15 O 1.21685 * 119.99504 * 174.75985 * 14 13 12 16 16 C 1.46369 * 119.99793 * 354.75664 * 14 13 12 17 17 H 1.07997 * 120.00589 * 5.68270 * 16 14 13 18 18 C 1.40052 * 119.99918 * 185.67734 * 16 14 13 19 19 N 1.30675 * 119.99815 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00465 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46603 * 60.00432 * 20 18 16 22 22 H 1.48498 * 109.47123 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46870 * 300.00673 * 20 18 16 24 24 C 1.46925 * 118.73811 * 306.38200 * 13 12 11 25 25 C 1.53034 * 109.46204 * 174.97146 * 10 9 7 26 26 C 1.47080 * 118.24023 * 51.45673 * 6 5 4 27 27 C 1.46902 * 110.99691 * 294.30184 * 3 2 1 28 28 H 1.08998 * 109.47307 * 60.00484 * 1 2 3 29 29 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47546 * 300.00333 * 1 2 3 31 31 H 1.08997 * 109.47146 * 239.99861 * 2 1 3 32 32 H 1.08998 * 109.47307 * 119.99516 * 2 1 3 33 33 H 1.09001 * 109.49632 * 67.29622 * 4 3 2 34 34 H 1.08995 * 109.49661 * 307.20932 * 4 3 2 35 35 H 1.08996 * 109.63160 * 186.45982 * 5 4 3 36 36 H 1.09005 * 109.62760 * 65.87648 * 5 4 3 37 37 H 1.08999 * 109.47271 * 299.99796 * 9 7 6 38 38 H 1.09004 * 109.47222 * 60.00085 * 9 7 6 39 39 H 1.09004 * 109.45522 * 54.99731 * 10 9 7 40 40 H 1.09003 * 109.49860 * 298.55790 * 11 10 9 41 41 H 1.09000 * 109.49953 * 58.66108 * 11 10 9 42 42 H 1.08998 * 109.60167 * 294.86386 * 12 11 10 43 43 H 1.09004 * 109.58279 * 174.42782 * 12 11 10 44 44 H 0.96995 * 120.00379 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.58328 * 293.81936 * 24 13 12 46 46 H 1.08996 * 109.70327 * 173.46929 * 24 13 12 47 47 H 1.09000 * 109.50154 * 301.33843 * 25 10 9 48 48 H 1.09003 * 109.49601 * 61.40434 * 25 10 9 49 49 H 1.08998 * 109.62579 * 68.25038 * 26 6 5 50 50 H 1.08996 * 109.62766 * 188.83346 * 26 6 5 51 51 H 1.09008 * 109.49392 * 292.70201 * 27 3 2 52 52 H 1.08996 * 109.49740 * 52.78825 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4312 0.2381 5 6 3.9081 2.8890 0.4109 6 7 3.4445 3.6580 -0.7540 7 6 4.2946 4.4378 -1.4509 8 8 5.4588 4.5126 -1.1198 9 6 3.7981 5.2177 -2.6410 10 6 4.9549 6.0149 -3.2470 11 6 5.4306 7.0668 -2.2424 12 6 6.6113 7.8394 -2.8389 13 7 6.2080 8.3877 -4.1410 14 6 6.3458 9.7023 -4.4050 15 8 6.0982 10.1285 -5.5175 16 6 6.7931 10.6169 -3.3535 17 1 7.1005 10.2279 -2.3941 18 6 6.8225 11.9968 -3.5915 19 7 6.4502 12.4676 -4.7522 20 14 7.3927 13.1643 -2.2494 21 1 8.7901 12.8360 -1.8687 22 1 7.3304 14.5612 -2.7492 23 1 6.5104 13.0235 -1.0633 24 6 5.6513 7.4759 -5.1496 25 6 4.4816 6.7071 -4.5271 26 6 2.0273 3.5581 -1.1345 27 6 1.6629 2.0694 -1.2499 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9909 0.9920 -0.6117 34 1 3.7066 0.8700 1.1416 35 1 4.9952 2.9387 0.4734 36 1 3.4672 3.2992 1.3195 37 1 3.4010 4.5290 -3.3868 38 1 3.0119 5.9030 -2.3241 39 1 5.7774 5.3394 -3.4823 40 1 4.6157 7.7577 -2.0257 41 1 5.7456 6.5749 -1.3222 42 1 7.4586 7.1668 -2.9722 43 1 6.8903 8.6538 -2.1701 44 1 6.4702 13.4233 -4.9170 45 1 6.4203 6.7736 -5.4714 46 1 5.2974 8.0483 -6.0070 47 1 4.1210 5.9592 -5.2333 48 1 3.6753 7.4009 -4.2888 49 1 1.4091 4.0314 -0.3716 50 1 1.8703 4.0503 -2.0943 51 1 2.2106 1.6213 -2.0791 52 1 0.5917 1.9710 -1.4257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408322920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:17 Heat of formation + Delta-G solvation = -91.682098 kcal Electronic energy + Delta-G solvation = -30074.704319 eV Core-core repulsion = 26072.796567 eV Total energy + Delta-G solvation = -4001.907752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.43062 -40.24848 -39.22021 -37.70088 -35.98099 -34.75216 -34.36227 -32.57518 -31.96451 -31.49475 -29.85414 -28.34656 -27.37160 -25.03896 -24.54653 -24.04016 -23.01753 -22.12181 -21.61035 -20.44643 -19.77938 -18.49478 -18.13082 -17.72545 -17.00596 -16.68094 -16.30155 -16.25834 -16.11050 -15.92268 -15.58538 -15.48291 -15.29257 -15.08115 -14.68897 -14.47897 -14.19384 -14.01950 -13.96235 -13.49630 -13.36337 -13.23149 -12.96247 -12.88011 -12.81658 -12.72805 -12.59688 -12.43586 -12.35579 -12.26995 -12.13572 -12.03605 -11.93389 -11.74430 -11.59172 -11.47493 -11.22079 -10.91888 -10.59793 -9.79472 -9.76242 -9.27501 -9.05411 -8.28771 -6.83178 1.38311 1.42017 1.53225 1.66046 1.98070 2.23881 2.46234 2.88213 2.88899 3.51676 3.57116 3.82418 3.88296 3.90062 3.95997 4.01306 4.12134 4.22554 4.26756 4.33270 4.42649 4.45929 4.46327 4.52039 4.58688 4.61717 4.64058 4.65958 4.73187 4.75503 4.78550 4.86006 4.92823 4.99273 5.02728 5.04134 5.13454 5.14610 5.16627 5.20146 5.24509 5.39139 5.40287 5.49720 5.56478 5.80779 6.02198 6.05145 6.15483 6.42883 6.45508 6.88181 7.21378 7.43514 8.47601 8.67725 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.002147 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.037197 B =13036.869759 C =13526.767437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.050 3.950 5 C 0.115 3.885 6 N -0.617 5.617 7 C 0.512 3.488 8 O -0.574 6.574 9 C -0.125 4.125 10 C -0.060 4.060 11 C -0.119 4.119 12 C 0.121 3.879 13 N -0.645 5.645 14 C 0.541 3.459 15 O -0.634 6.634 16 C -0.572 4.572 17 H 0.089 0.911 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.994 3.006 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.253 1.253 24 C 0.114 3.886 25 C -0.112 4.112 26 C 0.107 3.893 27 C 0.039 3.961 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.274 0.726 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.099 0.901 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.109 0.891 51 H 0.033 0.967 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 -26.211 12.192 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 N -0.271 5.271 4 C -0.079 4.079 5 C -0.008 4.008 6 N -0.351 5.351 7 C 0.303 3.697 8 O -0.454 6.454 9 C -0.165 4.165 10 C -0.080 4.080 11 C -0.158 4.158 12 C -0.002 4.002 13 N -0.381 5.381 14 C 0.348 3.652 15 O -0.521 6.521 16 C -0.608 4.608 17 H 0.107 0.893 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.813 3.187 21 H -0.180 1.180 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.010 4.010 25 C -0.150 4.150 26 C -0.015 4.015 27 C -0.090 4.090 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.117 0.883 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.128 0.872 51 H 0.051 0.949 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.698 -25.582 12.024 31.411 hybrid contribution 0.931 0.278 -0.423 1.060 sum -12.767 -25.304 11.600 30.624 Atomic orbital electron populations 1.21780 0.93790 1.02281 1.02448 1.22126 0.96910 0.87730 1.00990 1.62012 1.13102 1.16767 1.35202 1.22398 0.87904 0.96000 1.01578 1.21660 1.00229 0.90649 0.88290 1.48330 1.10682 1.45797 1.30309 1.21117 0.85286 0.78934 0.84411 1.90661 1.19213 1.65279 1.70239 1.21743 0.99559 0.99524 0.95653 1.20763 0.97260 0.95702 0.94227 1.21952 0.97626 0.96994 0.99188 1.21514 0.96488 0.97300 0.84901 1.48069 1.67362 1.07370 1.15322 1.18612 0.77407 0.80974 0.88250 1.90521 1.58230 1.77073 1.26305 1.21470 1.47508 0.91730 1.00065 0.89297 1.26977 0.92506 1.00706 0.98391 1.70179 1.36071 1.14535 1.24343 0.85135 0.79817 0.76074 0.77689 1.18020 1.19683 1.17710 1.21291 0.95860 0.91840 0.91976 1.21863 0.96825 0.99103 0.97209 1.22181 0.79770 0.96665 1.02888 1.22666 1.02599 0.93638 0.90074 0.92290 0.91335 0.92202 0.95110 0.90256 0.95451 0.88290 0.90376 0.90491 0.85995 0.87352 0.91484 0.93164 0.90060 0.93373 0.90616 0.91602 0.92949 0.93005 0.88277 0.92606 0.89841 0.87240 0.94850 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.84 71.98 0.71 -0.29 16 2 C 0.05 0.45 5.68 86.30 0.49 0.94 16 3 N -0.55 -6.28 4.63 -894.30 -4.14 -10.42 16 4 C 0.05 0.65 5.62 86.39 0.49 1.14 16 5 C 0.11 1.94 6.60 86.35 0.57 2.51 16 6 N -0.62 -10.88 3.00 -817.03 -2.45 -13.33 16 7 C 0.51 11.84 7.42 87.66 0.65 12.49 16 8 O -0.57 -18.07 13.42 -3.01 -0.04 -18.11 16 9 C -0.13 -2.41 3.54 29.85 0.11 -2.30 16 10 C -0.06 -1.67 1.80 -10.77 -0.02 -1.69 16 11 C -0.12 -4.01 5.11 30.67 0.16 -3.85 16 12 C 0.12 4.98 6.35 86.36 0.55 5.53 16 13 N -0.64 -31.46 2.97 -823.98 -2.45 -33.91 16 14 C 0.54 33.06 7.61 86.36 0.66 33.72 16 15 O -0.63 -44.09 14.48 -4.30 -0.06 -44.16 16 16 C -0.57 -33.73 8.88 24.83 0.22 -33.51 16 17 H 0.09 4.77 5.64 -2.91 -0.02 4.76 16 18 C 0.03 1.68 5.50 85.31 0.47 2.15 16 19 N -0.82 -51.61 11.84 21.84 0.26 -51.35 16 20 Si 0.99 42.32 29.56 68.60 2.03 44.35 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 24 C 0.11 4.66 6.41 86.36 0.55 5.21 16 25 C -0.11 -3.30 5.36 30.67 0.16 -3.14 16 26 C 0.11 1.18 6.53 86.51 0.57 1.75 16 27 C 0.04 0.38 5.48 86.54 0.47 0.86 16 28 H 0.06 0.37 6.40 -2.39 -0.02 0.35 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.03 0.29 8.12 -2.39 -0.02 0.27 16 32 H 0.08 0.64 7.97 -2.39 -0.02 0.63 16 33 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.10 1.02 7.99 -2.39 -0.02 1.01 16 35 H 0.08 1.62 7.06 -2.39 -0.02 1.61 16 36 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.12 1.59 7.67 -2.39 -0.02 1.57 16 38 H 0.11 1.81 7.99 -2.38 -0.02 1.79 16 39 H 0.07 1.98 7.96 -2.38 -0.02 1.96 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.74 5.93 -2.39 -0.01 2.73 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 3.30 5.30 -2.38 -0.01 3.29 16 44 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 45 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.05 2.43 7.04 -2.39 -0.02 2.41 16 47 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.11 0.82 6.02 -2.39 -0.01 0.80 16 51 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 52 H 0.11 0.71 6.16 -2.39 -0.01 0.70 16 Total: -1.00 -83.90 394.06 0.84 -83.06 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.90 Total: 22.37 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.80 Total: 21.50 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -8.78 Total: -109.01 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -0.10 Total: -62.27 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -83.90 0.84 -83.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408322920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.625 kcal (2) G-P(sol) polarization free energy of solvation -83.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds