Wall clock time and date at job start Tue Mar 31 2020 05:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30603 * 1 3 3 Si 1.86797 * 119.99783 * 2 1 4 4 H 1.48503 * 109.47383 * 240.00521 * 3 2 1 5 5 H 1.48499 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47444 * 120.00312 * 3 2 1 7 7 C 1.40209 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.40736 * 119.99981 * 359.97438 * 7 2 1 10 10 O 1.21972 * 119.99710 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00044 * 179.97438 * 9 7 2 12 12 N 1.40095 * 119.99943 * 180.02562 * 11 9 7 13 13 C 1.30664 * 120.00025 * 180.02562 * 12 11 9 14 14 C 1.46777 * 120.00160 * 179.97438 * 13 12 11 15 15 C 1.40228 * 120.12441 * 180.02562 * 14 13 12 16 16 C 1.37089 * 119.86985 * 179.97438 * 15 14 13 17 17 C 1.39172 * 120.12605 * 359.97438 * 16 15 14 18 18 O 1.35735 * 119.87291 * 179.97438 * 17 16 15 19 19 C 1.34750 * 116.99488 * 69.05073 * 18 17 16 20 20 O 1.21477 * 120.00026 * 5.77483 * 19 18 17 21 21 C 1.47704 * 119.99812 * 185.76954 * 19 18 17 22 22 C 1.39639 * 120.15019 * 359.72681 * 21 19 18 23 23 C 1.37940 * 119.84272 * 179.78540 * 22 21 19 24 24 C 1.38372 * 120.15490 * 0.48976 * 23 22 21 25 25 C 1.38375 * 120.30165 * 359.74074 * 24 23 22 26 26 C 1.37940 * 120.15035 * 0.02562 * 25 24 23 27 27 C 1.39171 * 120.25481 * 359.97438 * 17 16 15 28 28 C 1.37084 * 120.13081 * 0.02562 * 27 17 16 29 29 H 0.96992 * 120.00161 * 359.97438 * 1 2 3 30 30 H 0.96995 * 119.99909 * 0.02562 * 11 9 7 31 31 H 1.07995 * 119.99879 * 0.02562 * 13 12 11 32 32 H 1.07999 * 120.06638 * 0.25102 * 15 14 13 33 33 H 1.07997 * 119.93907 * 180.02562 * 16 15 14 34 34 H 1.07998 * 120.07838 * 0.02562 * 22 21 19 35 35 H 1.08002 * 119.92096 * 180.23238 * 23 22 21 36 36 H 1.07993 * 119.84910 * 179.71865 * 24 23 22 37 37 H 1.08001 * 119.92021 * 179.97438 * 25 24 23 38 38 H 1.08007 * 120.07307 * 179.97438 * 26 25 24 39 39 H 1.08005 * 119.93531 * 180.02562 * 27 17 16 40 40 H 1.07997 * 120.06601 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0936 1.6966 -1.2126 5 1 1.2749 2.7464 -0.0006 6 1 3.0938 1.6965 1.2124 7 6 2.0071 -1.2142 -0.0005 8 1 3.0871 -1.2142 -0.0010 9 6 1.3035 -2.4330 -0.0005 10 8 0.0838 -2.4330 -0.0005 11 7 1.9774 -3.6003 -0.0016 12 7 1.2770 -4.8135 -0.0021 13 6 1.9303 -5.9451 -0.0026 14 6 1.1965 -7.2163 -0.0026 15 6 1.8950 -8.4322 -0.0026 16 6 1.2044 -9.6164 -0.0021 17 6 -0.1874 -9.6133 -0.0010 18 8 -0.8660 -10.7888 -0.0010 19 6 -0.7992 -11.5337 1.1199 20 8 -0.2409 -11.0974 2.1066 21 6 -1.4049 -12.8805 1.1488 22 6 -2.0525 -13.3827 0.0182 23 6 -2.6120 -14.6431 0.0507 24 6 -2.5416 -15.4053 1.2035 25 6 -1.9056 -14.9119 2.3290 26 6 -1.3375 -13.6550 2.3087 27 6 -0.8859 -8.4096 0.0001 28 6 -0.2059 -7.2193 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 2.9474 -3.6002 -0.0020 31 1 3.0103 -5.9451 -0.0022 32 1 2.9750 -8.4357 0.0015 33 1 1.7412 -10.5535 -0.0017 34 1 -2.1117 -12.7872 -0.8809 35 1 -3.1099 -15.0342 -0.8242 36 1 -2.9854 -16.3896 1.2249 37 1 -1.8546 -15.5119 3.2255 38 1 -0.8417 -13.2710 3.1881 39 1 -1.9660 -8.4133 0.0013 40 1 -0.7490 -6.2859 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408719683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:49 Heat of formation + Delta-G solvation = -14.489514 kcal Electronic energy + Delta-G solvation = -25859.645684 eV Core-core repulsion = 21799.009322 eV Total energy + Delta-G solvation = -4060.636362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.45848 -39.56910 -38.54797 -37.62390 -36.88675 -35.10709 -32.71840 -32.10288 -31.47391 -31.40333 -31.12300 -29.06123 -26.64081 -25.35557 -23.53115 -22.94784 -22.69605 -21.50670 -20.55615 -19.71288 -18.59168 -18.08385 -17.68983 -16.81271 -16.58192 -15.85548 -15.81507 -15.54180 -15.29462 -15.04470 -14.43972 -14.33053 -14.09269 -13.97842 -13.60697 -13.43060 -13.36955 -13.14203 -12.71896 -12.63950 -12.17289 -11.99937 -11.92940 -11.61639 -11.43602 -11.33470 -11.00626 -10.80053 -10.68303 -10.66135 -10.43342 -9.58688 -9.54386 -9.50642 -9.10601 -9.00507 -8.76843 -7.81724 -7.32128 -6.43218 -4.99125 0.23717 0.79249 0.86318 1.46713 2.17327 2.35837 2.88743 3.05851 3.08939 3.11541 3.32952 3.64720 3.96408 4.05498 4.26562 4.40270 4.41388 4.45260 4.62563 4.85030 4.87426 4.89230 4.96350 5.05562 5.27633 5.39301 5.46541 5.50797 5.64188 5.71684 5.80185 5.80980 5.92221 5.94733 6.02739 6.18256 6.28112 6.33838 6.43990 6.54687 6.78772 6.91231 7.17418 7.61925 7.78034 7.94168 8.59164 8.72585 9.23505 10.35557 10.59217 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.038770 B = 0.001575 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.039976 B =17768.409046 C =17995.630548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.088 3.912 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.556 3.444 10 O -0.552 6.552 11 N -0.585 5.585 12 N -0.180 5.180 13 C 0.009 3.991 14 C -0.008 4.008 15 C -0.095 4.095 16 C -0.121 4.121 17 C 0.069 3.931 18 O -0.286 6.286 19 C 0.501 3.499 20 O -0.483 6.483 21 C -0.122 4.122 22 C -0.062 4.062 23 C -0.133 4.133 24 C -0.085 4.085 25 C -0.132 4.132 26 C -0.055 4.055 27 C -0.111 4.111 28 C -0.080 4.080 29 H 0.276 0.724 30 H 0.370 0.630 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -29.092 0.312 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.365 3.635 10 O -0.432 6.432 11 N -0.331 5.331 12 N 0.010 4.990 13 C -0.199 4.199 14 C -0.011 4.011 15 C -0.116 4.116 16 C -0.139 4.139 17 C 0.027 3.973 18 O -0.201 6.201 19 C 0.346 3.654 20 O -0.369 6.369 21 C -0.123 4.123 22 C -0.080 4.080 23 C -0.151 4.151 24 C -0.103 4.103 25 C -0.150 4.150 26 C -0.073 4.073 27 C -0.130 4.130 28 C -0.100 4.100 29 H 0.087 0.913 30 H 0.206 0.794 31 H 0.127 0.873 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.679 -28.136 0.623 28.270 hybrid contribution 1.954 0.555 0.027 2.032 sum -0.724 -27.581 0.650 27.598 Atomic orbital electron populations 1.69994 1.07370 1.28260 1.31422 1.25771 0.94699 1.00707 0.92426 0.86251 0.79786 0.80032 0.79735 1.18964 1.20200 1.18961 1.19728 0.94466 0.89576 1.53478 0.91060 1.16838 0.87891 0.80314 0.78477 1.90727 1.13385 1.85205 1.53840 1.48153 1.07528 1.01761 1.75641 1.74782 1.28055 0.93019 1.03179 1.23889 0.96753 0.90592 1.08708 1.18666 0.92869 0.91165 0.98362 1.20917 0.99941 0.90495 1.00224 1.20923 0.92543 0.98911 1.01571 1.18683 0.90283 0.83190 1.05178 1.84585 1.66521 1.30324 1.38714 1.21573 0.77482 0.85418 0.80924 1.90888 1.40285 1.71374 1.34368 1.19110 1.04725 0.91848 0.96664 1.21567 0.93374 0.95499 0.97537 1.21215 1.00710 0.94387 0.98828 1.21501 0.96282 0.99725 0.92810 1.21162 0.99050 0.95633 0.99162 1.21337 0.95840 0.93289 0.96809 1.20905 1.00585 0.90556 1.00922 1.21339 0.93551 0.98218 0.96895 0.91340 0.79420 0.87308 0.84955 0.85743 0.84159 0.84952 0.85256 0.84885 0.84342 0.85045 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.65 11.71 55.56 0.65 -21.00 16 2 C 0.09 2.37 5.50 -17.33 -0.10 2.27 16 3 Si 0.92 19.23 29.56 -169.99 -5.02 14.21 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.54 -14.74 9.26 -37.90 -0.35 -15.09 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 16.11 7.66 -15.31 -0.12 15.99 16 10 O -0.55 -18.35 15.20 4.94 0.08 -18.28 16 11 N -0.58 -13.91 6.26 28.93 0.18 -13.72 16 12 N -0.18 -4.01 10.19 32.13 0.33 -3.68 16 13 C 0.01 0.15 10.75 -14.60 -0.16 0.00 16 14 C -0.01 -0.13 5.88 -104.95 -0.62 -0.75 16 15 C -0.10 -1.23 9.77 -39.25 -0.38 -1.61 16 16 C -0.12 -1.56 9.29 -39.65 -0.37 -1.93 16 17 C 0.07 0.96 5.29 -38.89 -0.21 0.75 16 18 O -0.29 -3.60 9.28 -24.31 -0.23 -3.83 16 19 C 0.50 6.23 7.67 34.60 0.27 6.49 16 20 O -0.48 -7.34 15.80 -19.25 -0.30 -7.65 16 21 C -0.12 -1.17 5.87 -104.99 -0.62 -1.78 16 22 C -0.06 -0.46 9.62 -39.17 -0.38 -0.84 16 23 C -0.13 -0.75 10.03 -39.64 -0.40 -1.15 16 24 C -0.09 -0.43 10.04 -39.48 -0.40 -0.83 16 25 C -0.13 -0.78 10.03 -39.64 -0.40 -1.17 16 26 C -0.05 -0.45 9.60 -39.17 -0.38 -0.82 16 27 C -0.11 -1.60 9.95 -39.65 -0.39 -2.00 16 28 C -0.08 -1.29 9.56 -39.25 -0.38 -1.67 16 29 H 0.28 7.19 8.29 -40.82 -0.34 6.86 16 30 H 0.37 7.35 8.61 -182.61 -1.57 5.78 16 31 H 0.11 1.54 8.03 -52.49 -0.42 1.12 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.14 0.93 7.61 -52.49 -0.40 0.53 16 35 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.14 1.12 7.65 -52.48 -0.40 0.72 16 39 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 40 H 0.15 2.62 7.55 -52.49 -0.40 2.22 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -36.73 369.02 -9.40 -46.13 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.27 Total: 6.40 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -5.36 Total: -4.13 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 1.16 Total: -38.41 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.45 Total: -29.75 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.73 -9.40 -46.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408719683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.639 kcal (2) G-P(sol) polarization free energy of solvation -36.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds