Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99633 * 2 1 4 4 H 1.48504 * 109.46768 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47089 * 299.99991 * 3 2 1 6 6 H 1.48497 * 109.47146 * 60.00654 * 3 2 1 7 7 C 1.38658 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99893 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99740 * 359.97438 * 7 2 1 10 10 C 1.35763 * 116.99916 * 174.92203 * 9 7 2 11 11 C 1.39060 * 119.97614 * 5.53563 * 10 9 7 12 12 C 1.38257 * 120.28986 * 180.02562 * 11 10 9 13 13 C 1.37959 * 120.24784 * 359.97438 * 12 11 10 14 14 C 1.39939 * 119.95924 * 0.02562 * 13 12 11 15 15 C 1.47053 * 120.14080 * 179.97438 * 14 13 12 16 16 C 1.35481 * 119.99527 * 148.73598 * 15 14 13 17 17 S 1.77255 * 121.80984 * 353.12551 * 16 15 14 18 18 C 1.76252 * 100.90944 * 218.91085 * 17 16 15 19 19 C 1.38646 * 119.73017 * 153.93002 * 18 17 16 20 20 C 1.38193 * 120.01220 * 179.97438 * 19 18 17 21 21 C 1.38352 * 119.79810 * 0.03124 * 20 19 18 22 22 C 1.37939 * 120.46877 * 0.03227 * 21 20 19 23 23 C 1.39423 * 120.47169 * 0.02562 * 22 21 20 24 24 N 1.38947 * 118.40019 * 179.87793 * 23 22 21 25 25 C 1.33644 * 126.22279 * 200.82314 * 24 23 22 26 26 O 1.21660 * 119.79794 * 174.88271 * 25 24 23 27 27 C 1.38508 * 119.98431 * 185.83433 * 10 9 7 28 28 H 0.96995 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.86214 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.88055 * 179.97438 * 12 11 10 31 31 H 1.08003 * 120.01849 * 180.02562 * 13 12 11 32 32 H 1.08004 * 120.00625 * 329.01283 * 15 14 13 33 33 H 1.07999 * 119.99362 * 359.97438 * 19 18 17 34 34 H 1.07995 * 120.10168 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.76032 * 180.02562 * 21 20 19 36 36 H 1.07997 * 119.75728 * 179.97438 * 22 21 20 37 37 H 0.97002 * 116.88523 * 20.84728 * 24 23 22 38 38 H 1.07995 * 120.12087 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 -0.1081 11 6 3.4590 -3.4372 -0.0959 12 6 4.2141 -4.5901 -0.2056 13 6 3.5954 -5.8171 -0.3276 14 6 2.1984 -5.8971 -0.3411 15 6 1.5347 -7.2028 -0.4715 16 6 0.3316 -7.4127 0.1149 17 16 -0.4026 -6.2149 1.1958 18 6 -1.1071 -7.2627 2.4255 19 6 -1.3054 -6.7790 3.7096 20 6 -1.8578 -7.5953 4.6782 21 6 -2.2110 -8.8951 4.3621 22 6 -2.0150 -9.3828 3.0868 23 6 -1.4578 -8.5730 2.0981 24 7 -1.2772 -9.1090 0.8289 25 6 -0.4372 -8.6570 -0.1071 26 8 -0.3044 -9.2722 -1.1482 27 6 1.4365 -4.7296 -0.2363 28 1 -0.4850 0.8400 0.0004 29 1 3.9500 -2.4800 -0.0011 30 1 5.2923 -4.5300 -0.1957 31 1 4.1889 -6.7154 -0.4126 32 1 2.0084 -7.9960 -1.0310 33 1 -1.0281 -5.7639 3.9529 34 1 -2.0133 -7.2198 5.6787 35 1 -2.6430 -9.5324 5.1194 36 1 -2.2945 -10.3994 2.8528 37 1 -1.8122 -9.8852 0.6004 38 1 0.3580 -4.7831 -0.2504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409101019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = 15.470511 kcal Electronic energy + Delta-G solvation = -25130.119776 eV Core-core repulsion = 21415.816787 eV Total energy + Delta-G solvation = -3714.302989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.072 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.60797 -39.24529 -38.80214 -36.83016 -35.38091 -33.59936 -32.36435 -31.29479 -29.72955 -29.65707 -28.94213 -25.60402 -24.82374 -23.15024 -22.91829 -21.73111 -20.87583 -19.88601 -18.30597 -18.10010 -17.49539 -17.05266 -16.92651 -15.66053 -15.41937 -15.30160 -14.81135 -14.67009 -14.44481 -14.40795 -13.95805 -13.77781 -13.70367 -13.39463 -13.25670 -12.76897 -12.52256 -11.81957 -11.79698 -11.72250 -11.55643 -11.21126 -11.10493 -11.03164 -10.92152 -10.76902 -10.58097 -10.48504 -9.75755 -9.54499 -9.36660 -8.93218 -8.49157 -8.14545 -7.53695 -7.03936 -6.52431 -4.11315 0.60422 0.92351 1.11738 1.59472 2.14813 2.26064 2.40998 2.72292 3.02762 3.09514 3.10150 3.15453 3.54974 3.89353 4.16349 4.43455 4.54271 4.78515 4.89929 5.03549 5.05284 5.18349 5.31953 5.35495 5.48721 5.60695 5.66876 5.75765 5.80291 5.86893 6.03638 6.08297 6.14233 6.28664 6.39048 6.47432 6.57270 6.70167 6.90189 6.97816 7.04341 7.20026 7.27872 7.59245 7.72140 7.90770 8.92346 9.59519 10.64838 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.003295 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.880698 B = 8496.364124 C = 9762.373066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.151 3.849 11 C -0.216 4.216 12 C -0.075 4.075 13 C -0.180 4.180 14 C -0.052 4.052 15 C 0.050 3.950 16 C -0.249 4.249 17 S 0.079 5.921 18 C -0.166 4.166 19 C -0.060 4.060 20 C -0.129 4.129 21 C -0.092 4.092 22 C -0.146 4.146 23 C 0.160 3.840 24 N -0.657 5.657 25 C 0.576 3.424 26 O -0.517 6.517 27 C -0.142 4.142 28 H 0.271 0.729 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.410 0.590 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -15.221 7.240 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.097 3.903 11 C -0.236 4.236 12 C -0.093 4.093 13 C -0.200 4.200 14 C -0.053 4.053 15 C 0.021 3.979 16 C -0.364 4.364 17 S 0.334 5.666 18 C -0.280 4.280 19 C -0.083 4.083 20 C -0.150 4.150 21 C -0.113 4.113 22 C -0.168 4.168 23 C 0.058 3.942 24 N -0.299 5.299 25 C 0.364 3.636 26 O -0.393 6.393 27 C -0.165 4.165 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.246 0.754 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.246 -13.885 6.581 15.416 hybrid contribution 0.122 -0.961 0.029 0.969 sum -1.125 -14.846 6.610 16.290 Atomic orbital electron populations 1.70045 1.05978 1.27765 1.45262 1.25309 0.95852 0.98877 0.96373 0.85641 0.79158 0.80269 0.78337 1.19028 1.20085 1.20064 1.21399 0.91884 0.80658 1.52944 0.88842 1.83999 1.34196 1.11351 1.77920 1.19089 0.90233 0.87851 0.93149 1.21352 0.93602 0.99310 1.09357 1.20691 0.98786 0.92010 0.97859 1.20691 0.92422 0.97463 1.09381 1.18408 0.93510 0.90484 1.02907 1.22248 0.89044 0.95526 0.91051 1.23917 1.01552 0.99984 1.10905 1.85978 1.60486 1.03209 1.16900 1.22458 1.07837 0.96470 1.01210 1.20807 0.97292 1.00303 0.89919 1.21141 1.00248 0.94086 0.99494 1.20917 0.98952 0.95878 0.95578 1.20889 1.03921 0.99237 0.92788 1.17469 0.99665 0.92528 0.84510 1.42984 1.41301 1.33184 1.12423 1.18032 0.78889 0.84008 0.82710 1.90877 1.65094 1.57973 1.25392 1.20242 0.98288 0.90045 1.07880 0.91911 0.85101 0.86820 0.86878 0.83885 0.84487 0.85165 0.85416 0.85482 0.75371 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.37 13.67 55.48 0.76 -23.61 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.39 -10.52 9.49 30.89 0.29 -10.23 16 8 H 0.09 2.30 5.19 -52.49 -0.27 2.02 16 9 O -0.17 -4.70 9.75 0.01 0.00 -4.70 16 10 C 0.15 3.49 6.64 -39.18 -0.26 3.23 16 11 C -0.22 -4.41 9.17 -39.27 -0.36 -4.77 16 12 C -0.08 -1.27 10.02 -39.68 -0.40 -1.67 16 13 C -0.18 -2.93 9.79 -39.05 -0.38 -3.31 16 14 C -0.05 -0.92 5.57 -105.10 -0.59 -1.51 16 15 C 0.05 0.79 9.44 -36.99 -0.35 0.44 16 16 C -0.25 -4.05 5.90 -36.59 -0.22 -4.27 16 17 S 0.08 1.31 17.75 -107.50 -1.91 -0.60 16 18 C -0.17 -2.35 6.00 -38.95 -0.23 -2.59 16 19 C -0.06 -0.74 9.76 -39.45 -0.38 -1.12 16 20 C -0.13 -1.25 10.06 -39.56 -0.40 -1.65 16 21 C -0.09 -0.81 10.01 -39.65 -0.40 -1.21 16 22 C -0.15 -1.42 9.76 -39.25 -0.38 -1.80 16 23 C 0.16 2.01 6.55 -83.71 -0.55 1.46 16 24 N -0.66 -8.36 5.08 -10.86 -0.06 -8.41 16 25 C 0.58 8.97 7.70 -12.79 -0.10 8.87 16 26 O -0.52 -9.04 17.56 5.22 0.09 -8.95 16 27 C -0.14 -2.94 8.04 -38.90 -0.31 -3.26 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.13 2.64 5.62 -52.49 -0.29 2.35 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.14 1.95 7.98 -52.48 -0.42 1.54 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.89 8.05 -52.49 -0.42 0.47 16 37 H 0.41 4.12 8.57 -40.82 -0.35 3.77 16 38 H 0.12 2.59 5.42 -34.89 -0.19 2.40 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -31.44 343.53 -9.27 -40.71 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -3.20 Total: 7.99 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -5.11 Total: -22.39 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.70 Total: -32.02 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.91 Total: -0.60 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.44 -9.27 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409101019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.179 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds