Wall clock time and date at job start Tue Mar 31 2020 07:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47268 * 2 1 4 4 N 1.46501 * 109.47058 * 179.97438 * 3 2 1 5 5 C 1.34342 * 125.20205 * 89.98262 * 4 3 2 6 6 O 1.21626 * 125.03574 * 0.02928 * 5 4 3 7 7 N 1.34620 * 109.93697 * 180.02562 * 5 4 3 8 8 C 1.40140 * 107.50609 * 359.97438 * 7 5 4 9 9 C 1.36242 * 127.03207 * 179.97438 * 8 7 5 10 10 C 1.46134 * 120.00266 * 172.53425 * 9 8 7 11 11 C 1.37797 * 126.83079 * 319.93838 * 10 9 8 12 12 N 1.35873 * 109.47829 * 180.02562 * 11 10 9 13 13 C 1.36941 * 124.77510 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99992 * 157.83119 * 13 12 11 15 15 C 1.38969 * 119.99860 * 337.83863 * 13 12 11 16 16 N 1.31340 * 120.00103 * 349.20366 * 15 13 12 17 17 Si 1.86804 * 119.99900 * 169.20935 * 15 13 12 18 18 H 1.48503 * 109.47149 * 59.99796 * 17 15 13 19 19 H 1.48499 * 109.47306 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47293 * 299.99542 * 17 15 13 21 21 C 1.38421 * 110.44983 * 359.97438 * 12 11 10 22 22 C 1.39020 * 132.94771 * 179.97438 * 21 12 11 23 23 C 1.37932 * 119.95090 * 180.02562 * 22 21 12 24 24 C 1.38647 * 120.59998 * 359.97438 * 23 22 21 25 25 C 1.37934 * 120.26057 * 0.02562 * 24 23 22 26 26 C 1.39127 * 119.68891 * 359.97438 * 25 24 23 27 27 C 1.34732 * 125.20863 * 270.29643 * 4 3 2 28 28 O 1.21782 * 126.48488 * 359.96064 * 27 4 3 29 29 H 1.09005 * 109.47027 * 60.00313 * 1 2 3 30 30 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47401 * 299.99955 * 1 2 3 32 32 H 1.09004 * 109.47477 * 240.00301 * 2 1 3 33 33 H 1.09003 * 109.47244 * 120.00431 * 2 1 3 34 34 H 1.09003 * 109.46729 * 60.00327 * 3 2 1 35 35 H 1.08996 * 109.47572 * 300.00062 * 3 2 1 36 36 H 0.96996 * 126.24956 * 179.97438 * 7 5 4 37 37 H 1.07997 * 119.99845 * 352.53818 * 9 8 7 38 38 H 1.08005 * 125.26175 * 0.04941 * 11 10 9 39 39 H 0.97008 * 120.00132 * 180.02562 * 16 15 13 40 40 H 1.07990 * 120.02737 * 0.02677 * 22 21 12 41 41 H 1.07996 * 119.70066 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.86670 * 179.72734 * 24 23 22 43 43 H 1.07995 * 120.15719 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2799 1.4419 -1.0968 6 8 3.8691 1.4419 -2.2416 7 7 5.5784 1.4414 -0.7418 8 6 5.6326 1.4423 0.6585 9 6 6.7512 1.4417 1.4364 10 6 6.6349 1.6072 2.8837 11 6 5.7834 2.4601 3.5518 12 7 5.9693 2.3283 4.8913 13 6 5.2841 3.0293 5.8475 14 1 5.2132 2.6426 6.8535 15 6 4.6799 4.2381 5.5236 16 7 4.9382 4.8135 4.3715 17 14 3.5004 5.0448 6.7267 18 1 4.2094 5.3281 8.0004 19 1 2.9958 6.3161 6.1483 20 1 2.3587 4.1319 6.9882 21 6 6.9478 1.3851 5.1533 22 6 7.4981 0.8932 6.3314 23 6 8.4850 -0.0691 6.2813 24 6 8.9365 -0.5543 5.0635 25 6 8.4022 -0.0781 3.8843 26 6 7.4062 0.8926 3.9215 27 6 4.2813 1.4369 1.1018 28 8 3.8983 1.4317 2.2578 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 6.3379 1.4407 -1.3451 37 1 7.7238 1.3190 0.9834 38 1 5.0772 3.1295 3.0831 39 1 4.5168 5.6575 4.1455 40 1 7.1531 1.2642 7.2851 41 1 8.9093 -0.4486 7.1990 42 1 9.7129 -1.3046 5.0380 43 1 8.7554 -0.4569 2.9367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409253556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:32 Heat of formation + Delta-G solvation = 32.944860 kcal Electronic energy + Delta-G solvation = -29220.363358 eV Core-core repulsion = 25232.191089 eV Total energy + Delta-G solvation = -3988.172270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.25630 -40.26930 -37.97712 -36.35850 -36.15560 -35.53731 -33.71275 -32.79815 -31.84337 -29.86855 -28.79444 -27.44573 -27.07815 -25.16361 -23.57368 -22.34227 -21.82936 -21.28613 -20.69711 -20.40657 -18.63471 -17.86877 -17.56217 -16.40143 -16.08273 -15.62253 -15.56989 -15.13695 -14.85155 -14.78711 -14.61947 -14.48266 -13.65591 -13.61402 -13.54788 -13.33601 -13.16849 -12.98474 -12.41649 -12.20295 -12.15363 -11.98521 -11.59253 -11.53913 -11.42013 -11.22911 -11.15914 -10.79640 -10.76396 -10.74939 -10.53556 -10.47623 -10.08394 -9.77458 -9.35498 -9.32641 -8.87615 -7.99973 -7.36115 -6.97666 -6.47327 -4.49475 1.07904 2.03141 2.49118 2.65892 2.91379 2.96738 2.99104 3.14293 3.50545 3.66810 3.69261 3.98302 4.58040 4.60564 4.79150 4.88052 4.95614 5.03045 5.20798 5.41411 5.55332 5.59829 5.63036 5.68269 5.72076 5.82445 5.92002 5.96005 6.00850 6.09202 6.13377 6.23162 6.30288 6.38786 6.45939 6.72148 6.77954 6.86775 6.96345 6.99232 7.08252 7.26868 7.35696 7.41767 7.54129 7.75982 7.86786 8.14743 8.27746 8.48875 8.74669 9.15310 10.09465 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.004560 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.732211 B = 6139.079334 C = 8019.276475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.126 3.874 4 N -0.580 5.580 5 C 0.698 3.302 6 O -0.560 6.560 7 N -0.659 5.659 8 C -0.089 4.089 9 C 0.094 3.906 10 C -0.281 4.281 11 C 0.178 3.822 12 N -0.269 5.269 13 C -0.342 4.342 14 H 0.110 0.890 15 C 0.046 3.954 16 N -0.842 5.842 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.264 1.264 21 C 0.047 3.953 22 C -0.097 4.097 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.068 4.068 27 C 0.551 3.449 28 O -0.463 6.463 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.429 0.571 37 H 0.125 0.875 38 H 0.181 0.819 39 H 0.285 0.715 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 -5.003 -4.584 6.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.004 3.996 4 N -0.327 5.327 5 C 0.400 3.600 6 O -0.437 6.437 7 N -0.312 5.312 8 C -0.186 4.186 9 C 0.070 3.930 10 C -0.287 4.287 11 C 0.033 3.967 12 N 0.071 4.929 13 C -0.469 4.469 14 H 0.128 0.872 15 C -0.164 4.164 16 N -0.473 5.473 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.189 1.189 21 C -0.059 4.059 22 C -0.117 4.117 23 C -0.163 4.163 24 C -0.171 4.171 25 C -0.117 4.117 26 C -0.072 4.072 27 C 0.345 3.655 28 O -0.335 6.335 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.270 0.730 37 H 0.143 0.857 38 H 0.197 0.803 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.473 -4.614 -4.360 6.517 hybrid contribution -0.076 0.504 0.119 0.524 sum -1.549 -4.109 -4.241 6.105 Atomic orbital electron populations 1.21663 0.94683 1.02025 1.02066 1.21879 0.96541 0.96549 1.02935 1.21576 0.75687 0.98087 1.04201 1.46481 1.08531 1.69315 1.08380 1.15935 0.81572 0.78128 0.84381 1.90972 1.77016 1.57383 1.18283 1.43006 1.07134 1.74759 1.06261 1.18900 0.95076 1.21908 0.82699 1.20685 0.94131 0.86990 0.91185 1.18466 1.09673 1.10899 0.89672 1.22753 0.95125 0.96884 0.81944 1.40069 1.22599 1.24653 1.05559 1.19869 1.30620 1.03045 0.93385 0.87207 1.25537 0.97423 0.95609 0.97837 1.69791 1.38191 1.17396 1.21889 0.85735 0.79815 0.78443 0.79409 1.19092 1.20023 1.18896 1.18475 0.94888 0.97719 0.94828 1.20008 0.97888 0.98316 0.95516 1.20486 0.99324 0.99290 0.97201 1.20625 1.01873 1.02115 0.92450 1.20198 0.96778 0.97417 0.97307 1.18808 0.97774 0.98697 0.91932 1.17107 0.86448 0.77242 0.84696 1.90991 1.79511 1.46158 1.16811 0.92488 0.92357 0.92288 0.91510 0.91236 0.88900 0.89281 0.72992 0.85703 0.80262 0.90464 0.87142 0.87181 0.87401 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.15 0.37 -1.12 16 2 C -0.14 -1.80 6.26 -26.73 -0.17 -1.97 16 3 C 0.13 1.80 5.82 -4.04 -0.02 1.78 16 4 N -0.58 -9.86 2.64 -123.89 -0.33 -10.19 16 5 C 0.70 11.84 8.78 -87.45 -0.77 11.07 16 6 O -0.56 -10.47 17.69 5.25 0.09 -10.38 16 7 N -0.66 -9.74 6.24 -14.09 -0.09 -9.83 16 8 C -0.09 -1.54 6.86 -83.25 -0.57 -2.11 16 9 C 0.09 1.64 10.23 -37.13 -0.38 1.26 16 10 C -0.28 -6.06 5.63 -103.01 -0.58 -6.64 16 11 C 0.18 4.34 7.28 -15.92 -0.12 4.23 16 12 N -0.27 -6.76 2.88 -59.15 -0.17 -6.93 16 13 C -0.34 -8.51 9.87 -15.00 -0.15 -8.66 16 14 H 0.11 2.58 7.85 -52.48 -0.41 2.16 16 15 C 0.05 1.10 5.34 -17.49 -0.09 1.01 16 16 N -0.84 -20.91 10.87 55.49 0.60 -20.31 16 17 Si 0.94 18.38 29.57 -169.99 -5.03 13.35 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 21 C 0.05 1.08 6.72 -83.80 -0.56 0.51 16 22 C -0.10 -1.97 9.92 -39.40 -0.39 -2.36 16 23 C -0.14 -2.50 10.02 -39.54 -0.40 -2.89 16 24 C -0.15 -2.55 10.04 -39.54 -0.40 -2.94 16 25 C -0.10 -1.80 10.09 -39.36 -0.40 -2.19 16 26 C -0.07 -1.46 6.35 -104.89 -0.67 -2.12 16 27 C 0.55 10.62 7.50 -14.75 -0.11 10.51 16 28 O -0.46 -10.38 13.84 5.12 0.07 -10.31 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 35 H 0.09 1.17 7.99 -51.93 -0.41 0.76 16 36 H 0.43 4.89 8.96 -40.82 -0.37 4.52 16 37 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.18 4.63 5.37 -52.48 -0.28 4.35 16 39 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -29.30 369.20 -9.94 -39.24 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.26 Total: 12.43 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -5.40 Total: -2.64 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.02 Total: -47.25 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.16 Total: -20.69 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.30 -9.94 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409253556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.183 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds