Wall clock time and date at job start Tue Mar 31 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.99854 * 2 1 4 4 C 1.38232 * 119.99759 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00124 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00128 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47165 * 94.67619 * 6 5 4 8 8 O 1.21315 * 119.99752 * 5.10515 * 7 6 5 9 9 N 1.34772 * 120.00171 * 185.11124 * 7 6 5 10 10 N 1.40098 * 120.00034 * 185.02191 * 9 7 6 11 11 C 1.29846 * 120.00044 * 185.80144 * 10 9 7 12 12 C 1.47302 * 119.99873 * 9.04650 * 11 10 9 13 13 C 1.39685 * 120.19912 * 26.02457 * 12 11 10 14 14 C 1.37883 * 119.90594 * 180.29739 * 13 12 11 15 15 C 1.38526 * 120.31816 * 359.67700 * 14 13 12 16 16 C 1.38123 * 120.40647 * 0.02562 * 15 14 13 17 17 C 1.38725 * 120.07831 * 359.97438 * 16 15 14 18 18 O 1.35613 * 120.15400 * 180.02562 * 17 16 15 19 19 C 1.34803 * 117.00122 * 354.03832 * 18 17 16 20 20 H 1.08009 * 119.99891 * 5.14778 * 19 18 17 21 21 C 1.38642 * 120.00273 * 184.86865 * 19 18 17 22 22 N 1.31560 * 120.00237 * 175.20930 * 21 19 18 23 23 Si 1.86797 * 119.99699 * 355.21215 * 21 19 18 24 24 H 1.48506 * 109.47217 * 94.93176 * 23 21 19 25 25 H 1.48501 * 109.47330 * 214.92984 * 23 21 19 26 26 H 1.48503 * 109.47178 * 334.93314 * 23 21 19 27 27 C 1.38230 * 120.00375 * 0.25221 * 5 4 3 28 28 C 1.38232 * 120.00066 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46728 * 90.00514 * 1 2 3 30 30 H 1.09005 * 109.47384 * 210.00023 * 1 2 3 31 31 H 1.09000 * 109.47487 * 330.00501 * 1 2 3 32 32 H 1.08000 * 120.00215 * 359.97196 * 3 2 1 33 33 H 1.08004 * 120.00276 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47097 * 334.67952 * 6 5 4 35 35 H 1.08996 * 109.47165 * 214.67558 * 6 5 4 36 36 H 0.96998 * 119.99855 * 5.02265 * 9 7 6 37 37 H 1.08001 * 119.99850 * 189.04475 * 11 10 9 38 38 H 1.07999 * 120.05014 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.84208 * 179.70491 * 14 13 12 40 40 H 1.08005 * 119.79935 * 180.02562 * 15 14 13 41 41 H 1.07996 * 119.95640 * 180.02562 * 16 15 14 42 42 H 0.96991 * 119.99867 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.00629 * 179.73188 * 27 5 4 44 44 H 1.08002 * 119.99968 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2716 0.0000 0.0016 6 6 5.7787 0.0000 0.0016 7 6 6.2811 -0.1146 1.4178 8 8 5.4966 -0.2820 2.3280 9 7 7.6017 -0.0309 1.6732 10 7 8.0784 -0.2420 2.9736 11 6 9.3341 -0.0515 3.2437 12 6 10.2159 0.5741 2.2432 13 6 9.6851 1.4325 1.2775 14 6 10.5151 2.0100 0.3402 15 6 11.8754 1.7484 0.3549 16 6 12.4151 0.9065 1.3077 17 6 11.5953 0.3165 2.2587 18 8 12.1236 -0.5099 3.1951 19 6 13.4309 -0.8157 3.0740 20 1 14.0275 -0.3423 2.3082 21 6 14.0110 -1.7335 3.9362 22 7 15.2613 -2.1028 3.7597 23 14 13.0171 -2.4458 5.3483 24 1 12.4247 -3.7425 4.9322 25 1 13.9045 -2.6603 6.5195 26 1 11.9319 -1.5011 5.7159 27 6 3.5806 -1.1971 -0.0031 28 6 2.1982 -1.1971 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6582 2.1325 -0.0005 33 1 4.1206 2.1325 0.0001 34 1 6.1420 0.9286 -0.4387 35 1 6.1420 -0.8456 -0.5823 36 1 8.2221 0.1755 0.9568 37 1 9.7320 -0.3516 4.2018 38 1 8.6253 1.6402 1.2624 39 1 10.1029 2.6697 -0.4089 40 1 12.5179 2.2056 -0.3831 41 1 13.4766 0.7080 1.3127 42 1 15.6671 -2.7446 4.3631 43 1 4.1205 -2.1324 -0.0067 44 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409358754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:44 Heat of formation + Delta-G solvation = 40.643899 kcal Electronic energy + Delta-G solvation = -27213.800624 eV Core-core repulsion = 23291.388121 eV Total energy + Delta-G solvation = -3922.412503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.21326 -39.66779 -38.83707 -37.27059 -35.87329 -33.94456 -32.70993 -32.25100 -31.06679 -30.26507 -29.73465 -29.06080 -25.72455 -25.53346 -23.48062 -22.88554 -21.86102 -21.54900 -20.57296 -20.06312 -18.23058 -17.59839 -17.27514 -16.48809 -16.10623 -15.93679 -15.26989 -15.18688 -14.78024 -14.57349 -14.43873 -14.31204 -14.09607 -13.91408 -13.61832 -13.56791 -13.15731 -12.92727 -12.79482 -12.60089 -12.43339 -12.24238 -12.04299 -11.90650 -11.54280 -11.41255 -11.31671 -11.10236 -11.07965 -10.97573 -10.46357 -10.04805 -9.85666 -9.57046 -9.13175 -9.04511 -9.02932 -8.65844 -8.17409 -7.53525 -6.64121 -4.30982 1.13526 1.22520 1.29271 1.91269 2.41119 2.79902 3.10295 3.12305 3.16532 3.28259 3.64088 4.06261 4.21823 4.43453 4.45129 4.59595 4.72550 4.81645 4.85846 4.88877 4.91378 5.04698 5.18380 5.21994 5.24846 5.33202 5.33790 5.38988 5.53936 5.55478 5.57132 5.67969 5.82217 5.91954 5.92547 6.17454 6.24489 6.31619 6.37205 6.43205 6.44446 6.78805 6.81780 6.86228 6.97331 7.27771 7.31793 7.51321 7.75087 7.78063 8.60774 8.69269 9.25343 10.41855 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.002250 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.570650 B =12443.765185 C =13500.537681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.103 4.103 5 C -0.070 4.070 6 C -0.099 4.099 7 C 0.524 3.476 8 O -0.507 6.507 9 N -0.591 5.591 10 N -0.262 5.262 11 C 0.155 3.845 12 C -0.194 4.194 13 C -0.084 4.084 14 C -0.204 4.204 15 C -0.058 4.058 16 C -0.216 4.216 17 C 0.187 3.813 18 O -0.199 6.199 19 C -0.395 4.395 20 H 0.110 0.890 21 C 0.069 3.931 22 N -0.866 5.866 23 Si 0.903 3.097 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.255 1.255 27 C -0.095 4.095 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.393 0.607 37 H 0.181 0.819 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.283 0.717 43 H 0.121 0.879 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 5.676 -10.649 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.139 4.139 4 C -0.121 4.121 5 C -0.070 4.070 6 C -0.140 4.140 7 C 0.310 3.690 8 O -0.379 6.379 9 N -0.340 5.340 10 N -0.066 5.066 11 C -0.054 4.054 12 C -0.199 4.199 13 C -0.104 4.104 14 C -0.223 4.223 15 C -0.077 4.077 16 C -0.235 4.235 17 C 0.131 3.869 18 O -0.101 6.101 19 C -0.470 4.470 20 H 0.127 0.873 21 C -0.137 4.137 22 N -0.501 5.501 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.179 1.179 27 C -0.113 4.113 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.239 0.761 37 H 0.197 0.803 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.823 4.978 -9.402 23.383 hybrid contribution 1.218 0.104 -0.180 1.235 sum -19.605 5.081 -9.582 22.405 Atomic orbital electron populations 1.20784 0.91339 1.02763 1.02134 1.19916 0.95995 0.93289 0.99731 1.20951 0.94001 0.97486 1.01447 1.20977 0.94306 0.97304 0.99545 1.19205 0.93269 0.93715 1.00827 1.20673 0.93503 1.05577 0.94291 1.20447 0.80832 0.76792 0.90949 1.90720 1.54770 1.45803 1.46602 1.47676 1.08353 1.70765 1.07219 1.75327 1.14289 1.17942 0.99004 1.25233 0.88197 0.92684 0.99291 1.18603 0.91323 1.07557 1.02407 1.21147 0.99126 0.96023 0.94116 1.20605 0.93914 1.05679 1.02113 1.20999 0.94777 0.95293 0.96599 1.21331 1.01419 1.02559 0.98209 1.19087 0.90714 0.89367 0.87754 1.83491 1.27734 1.55671 1.43202 1.20790 0.81061 1.25339 1.19802 0.87267 1.24499 0.95643 0.95151 0.98382 1.69639 1.12015 1.30897 1.37575 0.86205 0.80270 0.80166 0.80638 1.19638 1.20428 1.17852 1.20972 0.94239 0.97462 0.98674 1.20972 0.94029 0.97513 1.01254 0.91292 0.91593 0.91616 0.86146 0.86130 0.87886 0.87426 0.76124 0.80255 0.85812 0.86773 0.86637 0.84316 0.90633 0.86123 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.10 -1.10 9.68 -39.59 -0.38 -1.48 16 5 C -0.07 -0.79 4.38 -104.62 -0.46 -1.25 16 6 C -0.10 -1.02 5.83 -29.03 -0.17 -1.19 16 7 C 0.52 7.89 7.93 -10.99 -0.09 7.81 16 8 O -0.51 -9.79 16.38 5.53 0.09 -9.70 16 9 N -0.59 -9.18 4.78 31.22 0.15 -9.03 16 10 N -0.26 -4.80 11.12 32.13 0.36 -4.44 16 11 C 0.15 2.77 10.86 -14.71 -0.16 2.61 16 12 C -0.19 -3.49 5.61 -104.89 -0.59 -4.07 16 13 C -0.08 -1.27 7.66 -39.17 -0.30 -1.57 16 14 C -0.20 -2.87 10.03 -39.61 -0.40 -3.26 16 15 C -0.06 -0.88 10.03 -39.52 -0.40 -1.28 16 16 C -0.22 -4.06 9.16 -39.44 -0.36 -4.42 16 17 C 0.19 3.83 6.66 -38.62 -0.26 3.57 16 18 O -0.20 -4.65 7.94 0.55 0.00 -4.65 16 19 C -0.40 -10.09 9.94 30.88 0.31 -9.78 16 20 H 0.11 2.84 5.44 -52.48 -0.29 2.55 16 21 C 0.07 1.79 5.49 -17.52 -0.10 1.69 16 22 N -0.87 -23.29 13.96 55.48 0.77 -22.52 16 23 Si 0.90 20.11 28.62 -169.99 -4.87 15.25 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.25 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.10 -1.07 9.71 -39.58 -0.38 -1.46 16 28 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.11 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.39 5.31 4.97 -182.60 -0.91 4.41 16 37 H 0.18 3.12 7.90 -52.49 -0.41 2.70 16 38 H 0.12 1.68 5.67 -52.49 -0.30 1.38 16 39 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.14 2.73 5.64 -52.49 -0.30 2.44 16 42 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -31.13 379.15 -8.50 -39.63 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.97 Total: 8.93 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -4.75 Total: -19.19 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 1.28 Total: -35.99 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.87 Total: 15.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.13 -8.50 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409358754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.276 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds