Wall clock time and date at job start Tue Mar 31 2020 08:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.74368 * 2 1 4 4 C 1.53371 * 109.61189 * 239.57555 * 2 1 3 5 5 N 1.46965 * 108.77665 * 190.91555 * 4 2 1 6 6 C 1.34773 * 120.59214 * 235.11765 * 5 4 2 7 7 O 1.21591 * 119.99906 * 174.32307 * 6 5 4 8 8 N 1.34780 * 120.00133 * 354.32017 * 6 5 4 9 9 O 1.41602 * 120.00059 * 184.95044 * 8 6 5 10 10 C 1.42899 * 114.00112 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47166 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46896 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.47401 * 59.99779 * 12 11 10 14 14 F 1.39905 * 109.46910 * 180.02562 * 12 11 10 15 15 F 1.39906 * 109.46852 * 299.99669 * 12 11 10 16 16 C 1.46965 * 118.81010 * 55.13831 * 5 4 2 17 17 C 1.53366 * 108.63560 * 304.76992 * 16 5 4 18 18 H 1.09008 * 109.61113 * 169.16920 * 17 16 5 19 19 C 1.52994 * 109.61482 * 289.68364 * 17 16 5 20 20 N 1.46963 * 108.63448 * 49.43115 * 17 16 5 21 21 C 1.36936 * 120.59976 * 124.77045 * 20 17 16 22 22 H 1.07994 * 120.00471 * 214.58560 * 21 20 17 23 23 C 1.38817 * 119.99752 * 34.58657 * 21 20 17 24 24 N 1.31622 * 119.99931 * 6.08814 * 23 21 20 25 25 Si 1.86795 * 120.00318 * 186.08913 * 23 21 20 26 26 H 1.48494 * 109.47378 * 89.99663 * 25 23 21 27 27 H 1.48500 * 109.47287 * 210.00251 * 25 23 21 28 28 H 1.48507 * 109.46818 * 329.99881 * 25 23 21 29 29 H 1.09002 * 109.46657 * 185.16521 * 1 2 3 30 30 H 1.08997 * 109.47502 * 305.15977 * 1 2 3 31 31 H 1.08996 * 109.47492 * 65.17022 * 1 2 3 32 32 H 1.08998 * 109.60975 * 71.08142 * 4 2 1 33 33 H 1.09007 * 109.60459 * 310.74208 * 4 2 1 34 34 H 0.97002 * 119.99857 * 4.94781 * 8 6 5 35 35 H 1.09005 * 109.46555 * 300.00004 * 10 9 8 36 36 H 1.08997 * 109.47004 * 59.99843 * 10 9 8 37 37 H 1.08994 * 109.47117 * 299.99950 * 11 10 9 38 38 H 1.08997 * 109.47309 * 60.00003 * 11 10 9 39 39 H 1.08992 * 109.61182 * 64.52186 * 16 5 4 40 40 H 1.09002 * 109.60674 * 184.86016 * 16 5 4 41 41 H 1.08996 * 109.46918 * 59.99714 * 19 17 16 42 42 H 1.08999 * 109.47652 * 180.02562 * 19 17 16 43 43 H 1.09004 * 109.46897 * 300.00302 * 19 17 16 44 44 H 0.96999 * 120.00505 * 175.00186 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0448 -0.7316 -1.2458 5 7 3.4906 -0.9523 -1.1012 6 6 4.3484 -0.5192 -2.0462 7 8 5.5475 -0.6146 -1.8685 8 7 3.8772 0.0196 -3.1882 9 8 4.7732 0.3780 -4.2244 10 6 4.1371 0.9375 -5.3752 11 6 5.1951 1.2848 -6.4244 12 6 4.5138 1.8832 -7.6568 13 9 3.8221 3.0427 -7.2905 14 9 5.4812 2.2003 -8.6165 15 9 3.6154 0.9531 -8.1907 16 6 3.9841 -1.6539 0.0921 17 6 3.4733 -0.9203 1.3383 18 1 3.6640 -1.5268 2.2238 19 6 4.1874 0.4262 1.4704 20 7 2.0275 -0.6997 1.1938 21 6 1.1558 -1.1401 2.1537 22 1 0.1765 -1.4970 1.8711 23 6 1.5309 -1.1276 3.4901 24 7 2.6747 -0.5831 3.8476 25 14 0.4127 -1.8838 4.7813 26 1 0.7563 -3.3179 4.9552 27 1 0.5938 -1.1713 6.0715 28 1 -1.0012 -1.7631 4.3434 29 1 -0.3633 -1.0235 0.0925 30 1 -0.3634 0.5918 0.8401 31 1 -0.3634 0.4315 -0.9326 32 1 1.8540 -0.1252 -2.1312 33 1 1.5362 -1.6909 -1.3429 34 1 2.9242 0.1617 -3.3003 35 1 3.4371 0.2130 -5.7915 36 1 3.5981 1.8407 -5.0893 37 1 5.8953 2.0090 -6.0083 38 1 5.7337 0.3814 -6.7102 39 1 3.6134 -2.6789 0.0933 40 1 5.0741 -1.6592 0.0887 41 1 3.9876 1.0317 0.5864 42 1 3.8231 0.9454 2.3569 43 1 5.2609 0.2607 1.5622 44 1 2.9040 -0.5091 4.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:18 Heat of formation + Delta-G solvation = -136.713537 kcal Electronic energy + Delta-G solvation = -30711.230670 eV Core-core repulsion = 25866.535800 eV Total energy + Delta-G solvation = -4844.694870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.58482 -48.07932 -48.05626 -39.97881 -38.11481 -37.05388 -34.17081 -33.71089 -32.72246 -31.73943 -30.48936 -27.93389 -26.39314 -26.04652 -25.15725 -23.69049 -22.82120 -21.09336 -20.45543 -19.23363 -19.05001 -18.76622 -18.42497 -17.93400 -17.02958 -16.43654 -16.11028 -15.42488 -15.08873 -15.06999 -14.91803 -14.69814 -14.47286 -14.31623 -14.19498 -14.18287 -14.09802 -13.68584 -13.53320 -13.25958 -13.11810 -12.69327 -12.54518 -12.33980 -12.00334 -11.75884 -11.57037 -11.31274 -11.20143 -10.96554 -10.85534 -10.66379 -10.59144 -10.15690 -10.06515 -9.87099 -9.77241 -9.47653 -8.95731 -8.49784 -8.16211 -6.57064 -5.84461 -3.36415 1.46108 2.31878 3.25085 3.32933 3.40116 3.41324 3.43504 3.48334 3.54448 3.84996 4.30454 4.31990 4.40345 4.46641 4.67751 5.01686 5.04721 5.15134 5.33640 5.51385 5.56797 5.74472 5.91960 6.10515 6.20821 6.24483 6.29916 6.41930 6.60031 6.74429 6.78463 6.84294 6.93477 7.01346 7.05403 7.15865 7.63482 7.69824 7.81442 8.12471 8.44529 8.86972 9.17018 9.75005 10.34301 11.23162 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.002305 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.130203 B =12143.172105 C =12678.036710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.155 3.845 3 H 0.032 0.968 4 C 0.098 3.902 5 N -0.602 5.602 6 C 0.722 3.278 7 O -0.578 6.578 8 N -0.617 5.617 9 O -0.125 6.125 10 C 0.030 3.970 11 C -0.162 4.162 12 C 0.462 3.538 13 F -0.180 7.180 14 F -0.178 7.178 15 F -0.181 7.181 16 C 0.111 3.889 17 C 0.180 3.820 18 H 0.111 0.889 19 C -0.136 4.136 20 N -0.580 5.580 21 C -0.255 4.255 22 H 0.068 0.932 23 C 0.011 3.989 24 N -0.899 5.899 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.020 0.980 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 3.459 -20.121 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 H 0.049 0.951 4 C -0.027 4.027 5 N -0.342 5.342 6 C 0.424 3.576 7 O -0.455 6.455 8 N -0.326 5.326 9 O -0.129 6.129 10 C -0.048 4.048 11 C -0.202 4.202 12 C 0.408 3.592 13 F -0.162 7.162 14 F -0.159 7.159 15 F -0.163 7.163 16 C -0.012 4.012 17 C 0.073 3.927 18 H 0.128 0.872 19 C -0.195 4.195 20 N -0.303 5.303 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.188 4.188 24 N -0.543 5.543 25 Si 0.732 3.268 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.039 0.961 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.531 3.316 -19.832 20.166 hybrid contribution -1.316 0.098 0.145 1.327 sum 0.216 3.414 -19.687 19.982 Atomic orbital electron populations 1.21753 0.95153 1.02233 1.00122 1.20783 0.93179 0.94039 0.87318 0.95071 1.22373 0.80588 1.00700 0.99061 1.47120 1.05896 1.60184 1.20991 1.15297 0.85495 0.78373 0.78450 1.90899 1.13436 1.62274 1.78857 1.46438 1.04813 1.70551 1.10805 1.90502 1.18243 1.83580 1.20538 1.22721 0.95758 0.99795 0.86523 1.22602 0.99842 1.06072 0.91659 1.20180 0.77172 0.76450 0.85391 1.93219 1.80560 1.51000 1.91416 1.93220 1.63089 1.93127 1.66512 1.93216 1.69471 1.65581 1.88004 1.22525 0.99699 0.94875 0.84119 1.20813 0.82754 0.95076 0.94069 0.87162 1.21956 0.97645 0.99243 1.00658 1.44084 1.01972 1.64542 1.19748 1.19124 0.97762 1.35907 0.85653 0.91398 1.25268 0.97148 0.98962 0.97470 1.69873 1.22030 1.46567 1.15830 0.86317 0.80359 0.78750 0.81381 1.21441 1.21759 1.20543 0.92206 0.91735 0.94242 0.92591 0.91262 0.75376 0.90728 0.90648 0.85699 0.85764 0.92221 0.89854 0.96115 0.90747 0.95222 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.06 37.16 0.30 -1.88 16 2 C 0.15 2.85 3.23 -67.44 -0.22 2.63 16 3 H 0.03 0.63 7.39 -51.93 -0.38 0.24 16 4 C 0.10 1.50 5.86 -3.60 -0.02 1.48 16 5 N -0.60 -10.67 2.61 -178.22 -0.47 -11.14 16 6 C 0.72 13.20 8.44 -86.92 -0.73 12.47 16 7 O -0.58 -12.86 16.17 -12.80 -0.21 -13.07 16 8 N -0.62 -8.72 6.30 27.63 0.17 -8.55 16 9 O -0.13 -1.66 11.11 -29.56 -0.33 -1.99 16 10 C 0.03 0.25 5.98 37.16 0.22 0.47 16 11 C -0.16 -1.03 5.63 -26.73 -0.15 -1.18 16 12 C 0.46 3.26 3.16 37.16 0.12 3.37 16 13 F -0.18 -1.45 16.80 2.25 0.04 -1.41 16 14 F -0.18 -1.39 17.32 2.25 0.04 -1.35 16 15 F -0.18 -1.42 16.80 2.25 0.04 -1.38 16 16 C 0.11 2.17 5.97 -3.60 -0.02 2.15 16 17 C 0.18 4.01 2.32 -67.49 -0.16 3.85 16 18 H 0.11 2.78 6.12 -51.92 -0.32 2.47 16 19 C -0.14 -3.06 8.94 37.15 0.33 -2.72 16 20 N -0.58 -13.00 2.67 -156.96 -0.42 -13.42 16 21 C -0.25 -6.25 8.56 -15.06 -0.13 -6.38 16 22 H 0.07 1.63 6.22 -52.49 -0.33 1.30 16 23 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 24 N -0.90 -24.04 9.79 55.49 0.54 -23.50 16 25 Si 0.90 20.42 29.56 -169.99 -5.03 15.40 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.99 7.01 -51.93 -0.36 0.63 16 30 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.66 5.62 -51.93 -0.29 0.36 16 33 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.40 4.39 6.02 -40.82 -0.25 4.15 16 35 H 0.07 0.52 7.80 -51.93 -0.41 0.11 16 36 H 0.08 0.55 7.80 -51.93 -0.41 0.14 16 37 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.68 6.97 -51.93 -0.36 1.32 16 41 H 0.02 0.45 7.01 -51.93 -0.36 0.08 16 42 H 0.07 1.86 7.05 -51.93 -0.37 1.49 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -30.68 361.84 -6.62 -37.30 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.91 Total: 3.21 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: -0.55 Total: 14.44 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.17 Total: -56.60 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.54 Total: -15.05 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.11 Total: -4.14 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.68 -6.62 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.415 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds