Wall clock time and date at job start Tue Mar 31 2020 08:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.74368 * 2 1 4 4 C 1.53371 * 109.61189 * 239.57555 * 2 1 3 5 5 N 1.46965 * 108.77665 * 190.91555 * 4 2 1 6 6 C 1.34773 * 120.59214 * 235.11765 * 5 4 2 7 7 O 1.21591 * 119.99906 * 174.32307 * 6 5 4 8 8 N 1.34780 * 120.00133 * 354.32017 * 6 5 4 9 9 O 1.41602 * 120.00059 * 184.95044 * 8 6 5 10 10 C 1.42899 * 114.00112 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47166 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46896 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.47401 * 59.99779 * 12 11 10 14 14 F 1.39905 * 109.46910 * 180.02562 * 12 11 10 15 15 F 1.39906 * 109.46852 * 299.99669 * 12 11 10 16 16 C 1.46965 * 118.81010 * 55.13831 * 5 4 2 17 17 C 1.53366 * 108.63560 * 304.76992 * 16 5 4 18 18 H 1.09008 * 109.61113 * 169.16920 * 17 16 5 19 19 C 1.52994 * 109.61482 * 289.68364 * 17 16 5 20 20 N 1.46963 * 108.63448 * 49.43115 * 17 16 5 21 21 C 1.36936 * 120.59976 * 124.77045 * 20 17 16 22 22 H 1.07994 * 120.00471 * 214.58560 * 21 20 17 23 23 C 1.38817 * 119.99752 * 34.58657 * 21 20 17 24 24 N 1.31622 * 119.99931 * 6.08814 * 23 21 20 25 25 Si 1.86795 * 120.00318 * 186.08913 * 23 21 20 26 26 H 1.48494 * 109.47378 * 89.99663 * 25 23 21 27 27 H 1.48500 * 109.47287 * 210.00251 * 25 23 21 28 28 H 1.48507 * 109.46818 * 329.99881 * 25 23 21 29 29 H 1.09002 * 109.46657 * 185.16521 * 1 2 3 30 30 H 1.08997 * 109.47502 * 305.15977 * 1 2 3 31 31 H 1.08996 * 109.47492 * 65.17022 * 1 2 3 32 32 H 1.08998 * 109.60975 * 71.08142 * 4 2 1 33 33 H 1.09007 * 109.60459 * 310.74208 * 4 2 1 34 34 H 0.97002 * 119.99857 * 4.94781 * 8 6 5 35 35 H 1.09005 * 109.46555 * 300.00004 * 10 9 8 36 36 H 1.08997 * 109.47004 * 59.99843 * 10 9 8 37 37 H 1.08994 * 109.47117 * 299.99950 * 11 10 9 38 38 H 1.08997 * 109.47309 * 60.00003 * 11 10 9 39 39 H 1.08992 * 109.61182 * 64.52186 * 16 5 4 40 40 H 1.09002 * 109.60674 * 184.86016 * 16 5 4 41 41 H 1.08996 * 109.46918 * 59.99714 * 19 17 16 42 42 H 1.08999 * 109.47652 * 180.02562 * 19 17 16 43 43 H 1.09004 * 109.46897 * 300.00302 * 19 17 16 44 44 H 0.96999 * 120.00505 * 175.00186 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0448 -0.7316 -1.2458 5 7 3.4906 -0.9523 -1.1012 6 6 4.3484 -0.5192 -2.0462 7 8 5.5475 -0.6146 -1.8685 8 7 3.8772 0.0196 -3.1882 9 8 4.7732 0.3780 -4.2244 10 6 4.1371 0.9375 -5.3752 11 6 5.1951 1.2848 -6.4244 12 6 4.5138 1.8832 -7.6568 13 9 3.8221 3.0427 -7.2905 14 9 5.4812 2.2003 -8.6165 15 9 3.6154 0.9531 -8.1907 16 6 3.9841 -1.6539 0.0921 17 6 3.4733 -0.9203 1.3383 18 1 3.6640 -1.5268 2.2238 19 6 4.1874 0.4262 1.4704 20 7 2.0275 -0.6997 1.1938 21 6 1.1558 -1.1401 2.1537 22 1 0.1765 -1.4970 1.8711 23 6 1.5309 -1.1276 3.4901 24 7 2.6747 -0.5831 3.8476 25 14 0.4127 -1.8838 4.7813 26 1 0.7563 -3.3179 4.9552 27 1 0.5938 -1.1713 6.0715 28 1 -1.0012 -1.7631 4.3434 29 1 -0.3633 -1.0235 0.0925 30 1 -0.3634 0.5918 0.8401 31 1 -0.3634 0.4315 -0.9326 32 1 1.8540 -0.1252 -2.1312 33 1 1.5362 -1.6909 -1.3429 34 1 2.9242 0.1617 -3.3003 35 1 3.4371 0.2130 -5.7915 36 1 3.5981 1.8407 -5.0893 37 1 5.8953 2.0090 -6.0083 38 1 5.7337 0.3814 -6.7102 39 1 3.6134 -2.6789 0.0933 40 1 5.0741 -1.6592 0.0887 41 1 3.9876 1.0317 0.5864 42 1 3.8231 0.9454 2.3569 43 1 5.2609 0.2607 1.5622 44 1 2.9040 -0.5091 4.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864095523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:10 Heat of formation + Delta-G solvation = -154.374829 kcal Electronic energy + Delta-G solvation = -30711.996521 eV Core-core repulsion = 25866.535800 eV Total energy + Delta-G solvation = -4845.460721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.16464 -48.66606 -48.64117 -41.37955 -39.31647 -38.39346 -35.74815 -34.70498 -34.16287 -33.28232 -31.79816 -29.68161 -27.77133 -27.06566 -26.43500 -25.41941 -23.42301 -22.64161 -21.86279 -20.42315 -20.06549 -19.62095 -19.27607 -18.95104 -17.93705 -17.80770 -17.24370 -16.97241 -16.57604 -16.22289 -15.76772 -15.66982 -15.46457 -15.40511 -15.28064 -15.06393 -14.90352 -14.79586 -14.78395 -14.65921 -14.40400 -13.75041 -13.59473 -13.44692 -13.23689 -13.02504 -12.91136 -12.86506 -12.75254 -12.49204 -12.30618 -12.21393 -12.00628 -11.94005 -11.72337 -11.50717 -11.48532 -11.10892 -10.40911 -10.17187 -9.59518 -8.36913 -7.76307 -5.28706 0.42976 1.51989 1.54728 1.61022 1.70058 2.07266 2.41312 2.58088 2.74201 2.91907 3.01168 3.41098 3.52223 3.68860 3.72386 3.79726 4.12250 4.16198 4.21469 4.29049 4.49434 4.49650 4.60041 4.66129 4.69858 4.74641 4.87095 4.90381 5.01923 5.14510 5.22877 5.33190 5.42186 5.58260 5.61754 5.78084 5.80012 5.86202 6.01572 6.55518 6.83410 7.27493 7.52586 7.93772 8.48479 9.29345 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.002305 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.130203 B =12143.172105 C =12678.036710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.147 3.853 3 H 0.016 0.984 4 C 0.104 3.896 5 N -0.604 5.604 6 C 0.720 3.280 7 O -0.624 6.624 8 N -0.601 5.601 9 O -0.146 6.146 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.468 3.532 13 F -0.186 7.186 14 F -0.182 7.182 15 F -0.185 7.185 16 C 0.124 3.876 17 C 0.183 3.817 18 H 0.077 0.923 19 C -0.118 4.118 20 N -0.595 5.595 21 C -0.248 4.248 22 H 0.077 0.923 23 C -0.043 4.043 24 N -0.928 5.928 25 Si 0.958 3.042 26 H -0.291 1.291 27 H -0.304 1.304 28 H -0.269 1.269 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.420 0.580 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.021 0.979 42 H 0.044 0.956 43 H 0.029 0.971 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 3.415 -22.728 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.040 3.960 3 H 0.034 0.966 4 C -0.020 4.020 5 N -0.343 5.343 6 C 0.422 3.578 7 O -0.504 6.504 8 N -0.310 5.310 9 O -0.150 6.150 10 C -0.054 4.054 11 C -0.195 4.195 12 C 0.414 3.586 13 F -0.168 7.168 14 F -0.164 7.164 15 F -0.166 7.166 16 C 0.000 4.000 17 C 0.075 3.925 18 H 0.094 0.906 19 C -0.177 4.177 20 N -0.318 5.318 21 C -0.378 4.378 22 H 0.094 0.906 23 C -0.239 4.239 24 N -0.574 5.574 25 Si 0.787 3.213 26 H -0.218 1.218 27 H -0.231 1.231 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.102 3.289 -22.507 22.746 hybrid contribution -0.851 0.182 0.822 1.197 sum -0.952 3.472 -21.685 21.982 Atomic orbital electron populations 1.21679 0.93173 1.02029 1.01551 1.21019 0.94861 0.93208 0.86881 0.96583 1.22420 0.78852 1.01772 0.98968 1.47045 1.06915 1.59905 1.20387 1.15364 0.84805 0.78312 0.79301 1.90870 1.15447 1.64054 1.79989 1.46013 1.05704 1.69073 1.10194 1.90503 1.19091 1.84038 1.21345 1.23003 0.96531 1.00556 0.85264 1.22580 0.99431 1.06773 0.90742 1.20187 0.76885 0.76140 0.85390 1.93211 1.80709 1.51403 1.91435 1.93213 1.63269 1.93158 1.66743 1.93211 1.69642 1.65673 1.88122 1.22139 0.99042 0.94952 0.83893 1.20587 0.83330 0.94374 0.94196 0.90560 1.21751 0.97571 0.99307 0.99090 1.44285 1.01655 1.65187 1.20716 1.19429 0.97973 1.34364 0.86006 0.90578 1.25898 0.98383 1.00266 0.99348 1.70049 1.23519 1.48596 1.15191 0.85425 0.79479 0.77453 0.78901 1.21790 1.23075 1.19356 0.92447 0.94030 0.89839 0.88183 0.89951 0.73374 0.89062 0.89491 0.84976 0.84698 0.91493 0.90843 0.95954 0.93720 0.95147 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.06 71.98 0.58 -3.14 16 2 C 0.15 5.11 3.23 45.01 0.15 5.26 16 3 H 0.02 0.63 7.39 -2.38 -0.02 0.61 16 4 C 0.10 2.81 5.86 86.42 0.51 3.32 16 5 N -0.60 -20.27 2.61 -836.02 -2.18 -22.45 16 6 C 0.72 25.06 8.44 179.05 1.51 26.57 16 7 O -0.62 -27.40 16.17 13.29 0.21 -27.18 16 8 N -0.60 -15.18 6.30 -184.74 -1.16 -16.34 16 9 O -0.15 -3.47 11.11 -21.50 -0.24 -3.71 16 10 C 0.02 0.31 5.98 71.98 0.43 0.74 16 11 C -0.16 -1.57 5.63 30.59 0.17 -1.40 16 12 C 0.47 5.52 3.16 71.98 0.23 5.75 16 13 F -0.19 -2.58 16.80 44.97 0.76 -1.82 16 14 F -0.18 -2.51 17.32 44.97 0.78 -1.73 16 15 F -0.18 -2.45 16.80 44.97 0.76 -1.70 16 16 C 0.12 4.83 5.97 86.41 0.52 5.34 16 17 C 0.18 8.27 2.32 45.02 0.10 8.38 16 18 H 0.08 4.01 6.12 -2.38 -0.01 3.99 16 19 C -0.12 -5.45 8.94 71.98 0.64 -4.81 16 20 N -0.59 -26.43 2.67 -650.51 -1.74 -28.17 16 21 C -0.25 -12.07 8.56 84.03 0.72 -11.35 16 22 H 0.08 3.54 6.22 -2.91 -0.02 3.53 16 23 C -0.04 -2.24 5.13 84.86 0.44 -1.81 16 24 N -0.93 -51.37 9.79 21.65 0.21 -51.16 16 25 Si 0.96 42.54 29.56 68.60 2.03 44.57 16 26 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.06 1.72 7.01 -2.39 -0.02 1.70 16 30 H 0.04 1.40 7.94 -2.39 -0.02 1.39 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.82 5.62 -2.39 -0.01 1.81 16 33 H 0.08 2.11 8.11 -2.38 -0.02 2.09 16 34 H 0.42 7.34 6.02 -92.71 -0.56 6.78 16 35 H 0.09 0.92 7.80 -2.38 -0.02 0.90 16 36 H 0.09 0.97 7.80 -2.39 -0.02 0.95 16 37 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 3.01 6.97 -2.39 -0.02 2.99 16 41 H 0.02 0.97 7.01 -2.39 -0.02 0.96 16 42 H 0.04 2.30 7.05 -2.39 -0.02 2.29 16 43 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.25 13.55 8.32 -92.71 -0.77 12.78 16 Total: -1.00 -68.36 361.84 5.90 -62.46 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.49 Total: 14.40 kcal Atomic # 6 Polarization: 26.85 SS G_CDS: 5.99 Total: 32.84 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -4.87 Total: -118.13 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.02 Total: -30.89 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 2.29 Total: -5.25 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.36 5.90 -62.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.920 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds