Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.21454 * 2 1 4 4 C 1.52718 * 109.24407 * 240.56244 * 2 1 3 5 5 C 1.53324 * 108.40080 * 290.84932 * 4 2 1 6 6 C 1.52730 * 108.36769 * 290.08790 * 5 4 2 7 7 C 1.52999 * 109.25396 * 290.90505 * 6 5 4 8 8 C 1.53001 * 109.22177 * 171.45372 * 6 5 4 9 9 C 1.50660 * 110.58557 * 51.19257 * 6 5 4 10 10 C 1.38670 * 117.63106 * 162.45470 * 9 6 5 11 11 C 1.39149 * 120.44503 * 179.97438 * 10 9 6 12 12 C 1.48216 * 120.25624 * 179.69643 * 11 10 9 13 13 C 1.37220 * 122.46998 * 184.72331 * 12 11 10 14 14 S 1.71011 * 109.07920 * 179.71203 * 13 12 11 15 15 C 1.75983 * 90.62914 * 0.34021 * 14 13 12 16 16 C 1.39877 * 125.29542 * 179.91507 * 15 14 13 17 17 H 1.07995 * 120.00520 * 186.10484 * 16 15 14 18 18 C 1.40181 * 119.99431 * 5.83618 * 16 15 14 19 19 N 1.30724 * 120.00460 * 353.66386 * 18 16 15 20 20 Si 1.86804 * 119.99939 * 173.66948 * 18 16 15 21 21 H 1.48504 * 109.47056 * 94.97957 * 20 18 16 22 22 H 1.48493 * 109.47300 * 214.98552 * 20 18 16 23 23 H 1.48500 * 109.46909 * 334.98685 * 20 18 16 24 24 N 1.31236 * 122.47242 * 4.70892 * 12 11 10 25 25 C 1.39497 * 119.48915 * 359.42733 * 11 10 9 26 26 C 1.37653 * 119.63162 * 0.39691 * 25 11 10 27 27 C 1.37819 * 122.55205 * 342.07392 * 9 6 5 28 28 H 1.08998 * 109.46700 * 300.56071 * 1 2 3 29 29 H 1.09003 * 109.47396 * 60.55637 * 1 2 3 30 30 H 1.09002 * 109.47263 * 180.56147 * 1 2 3 31 31 H 1.09002 * 109.47111 * 179.43515 * 3 2 1 32 32 H 1.09003 * 109.47514 * 299.44079 * 3 2 1 33 33 H 1.09005 * 109.46914 * 59.44065 * 3 2 1 34 34 H 1.09004 * 109.67591 * 171.12227 * 4 2 1 35 35 H 1.08996 * 109.70713 * 50.59326 * 4 2 1 36 36 H 1.08999 * 109.68946 * 170.36865 * 5 4 2 37 37 H 1.08996 * 109.71615 * 49.82326 * 5 4 2 38 38 H 1.09002 * 109.46903 * 181.10088 * 7 6 5 39 39 H 1.08997 * 109.47118 * 301.10121 * 7 6 5 40 40 H 1.08997 * 109.46780 * 61.10333 * 7 6 5 41 41 H 1.09001 * 109.47485 * 298.92523 * 8 6 5 42 42 H 1.09000 * 109.46727 * 58.92145 * 8 6 5 43 43 H 1.08996 * 109.46959 * 178.91565 * 8 6 5 44 44 H 1.08005 * 119.77871 * 359.68407 * 10 9 6 45 45 H 1.07998 * 125.46297 * 359.97438 * 13 12 11 46 46 H 0.97002 * 120.00617 * 180.02562 * 19 18 16 47 47 H 1.08002 * 120.18624 * 180.37183 * 25 11 10 48 48 H 1.07995 * 119.63354 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4447 0.0000 4 6 2.0334 -0.7086 -1.2557 5 6 1.7040 -2.2011 -1.1341 6 6 2.5932 -2.8033 -0.0481 7 6 4.0429 -2.8238 -0.5369 8 6 2.1375 -4.2352 0.2396 9 6 2.5072 -1.9908 1.2178 10 6 2.9414 -2.5842 2.3935 11 6 2.8887 -1.8868 3.5965 12 6 3.3476 -2.5275 4.8518 13 6 3.2287 -1.9187 6.0758 14 16 3.8552 -2.9583 7.2805 15 6 4.2561 -4.1618 6.0607 16 6 4.8571 -5.3994 6.3134 17 1 5.1556 -6.0327 5.4911 18 6 5.0771 -5.8151 7.6339 19 7 4.8359 -4.9978 8.6253 20 14 5.7151 -7.5369 7.9771 21 1 7.1930 -7.4983 8.1175 22 1 5.1115 -8.0471 9.2343 23 1 5.3481 -8.4341 6.8521 24 7 3.8974 -3.7189 4.8747 25 6 2.4060 -0.5781 3.6110 26 6 1.9806 0.0034 2.4381 27 6 2.0268 -0.6993 1.2388 28 1 -0.3633 0.5225 0.8849 29 1 -0.3634 0.5052 -0.8949 30 1 -0.3634 -1.0276 0.0101 31 1 3.1235 1.4496 0.0101 32 1 1.6762 1.9541 -0.8950 33 1 1.6597 1.9597 0.8850 34 1 3.1118 -0.5767 -1.3442 35 1 1.5395 -0.2942 -2.1345 36 1 1.8974 -2.6985 -2.0845 37 1 0.6561 -2.3254 -0.8612 38 1 4.6779 -3.2710 0.2280 39 1 4.1092 -3.4108 -1.4529 40 1 4.3743 -1.8043 -0.7339 41 1 1.1078 -4.2239 0.5971 42 1 2.1983 -4.8263 -0.6742 43 1 2.7817 -4.6755 1.0006 44 1 3.3186 -3.5961 2.3762 45 1 2.8034 -0.9415 6.2509 46 1 4.9884 -5.2853 9.5391 47 1 2.3657 -0.0244 4.5374 48 1 1.6072 1.0167 2.4493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000027257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = 12.622911 kcal Electronic energy + Delta-G solvation = -27456.306636 eV Core-core repulsion = 23986.234877 eV Total energy + Delta-G solvation = -3470.071760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64102 -37.90397 -36.15522 -35.89654 -34.09501 -30.72559 -29.78948 -29.24643 -28.22938 -27.45184 -26.92749 -26.28198 -23.75462 -23.49594 -22.32812 -21.54509 -19.49441 -18.88503 -17.79867 -17.40135 -16.15227 -15.66209 -15.26198 -15.16412 -14.68140 -14.28858 -14.19061 -13.77136 -13.65708 -13.47453 -13.23955 -12.89660 -12.81910 -12.46485 -12.37209 -12.22678 -12.08998 -11.99088 -11.73133 -11.70084 -11.65982 -11.56517 -11.39116 -11.28600 -10.97264 -10.86949 -10.79691 -10.57867 -10.43169 -10.34546 -10.00858 -9.84344 -9.70785 -9.43084 -8.40815 -8.20265 -7.87052 -7.80411 -7.11314 -6.85749 -4.75730 1.62387 1.93426 2.56728 2.91819 2.97463 3.05236 3.47999 3.66941 3.91359 3.99089 4.51742 4.61156 4.70956 4.77770 4.94133 5.00004 5.21306 5.33262 5.34952 5.37311 5.42689 5.49855 5.58831 5.67374 5.69319 5.72808 5.78908 5.81192 5.84186 5.89609 5.92166 5.97038 6.05586 6.06721 6.09699 6.16109 6.18887 6.29531 6.36015 6.47725 6.50714 6.55925 6.58427 6.68438 6.79807 6.89646 7.02977 7.12561 7.42145 7.51597 7.59030 7.87848 8.29547 8.38548 9.69840 9.79446 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.002987 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.890699 B = 9372.206299 C =10555.510207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 C -0.140 4.140 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.020 4.020 7 C -0.139 4.139 8 C -0.143 4.143 9 C -0.069 4.069 10 C -0.094 4.094 11 C 0.008 3.992 12 C 0.134 3.866 13 C -0.447 4.447 14 S 0.116 5.884 15 C 0.205 3.795 16 C -0.376 4.376 17 H 0.103 0.897 18 C 0.056 3.944 19 N -0.781 5.781 20 Si 0.941 3.059 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.256 1.256 24 N -0.589 5.589 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.081 4.081 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.298 0.702 47 H 0.118 0.882 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 5.697 -13.412 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 C -0.197 4.197 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.020 4.020 7 C -0.196 4.196 8 C -0.200 4.200 9 C -0.069 4.069 10 C -0.113 4.113 11 C 0.005 3.995 12 C -0.005 4.005 13 C -0.592 4.592 14 S 0.377 5.623 15 C -0.049 4.049 16 C -0.419 4.419 17 H 0.121 0.879 18 C -0.167 4.167 19 N -0.410 5.410 20 Si 0.764 3.236 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.180 1.180 24 N -0.310 5.310 25 C -0.134 4.134 26 C -0.142 4.142 27 C -0.081 4.081 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.111 0.889 47 H 0.136 0.864 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.469 5.460 -12.440 14.302 hybrid contribution -0.105 -0.036 -0.282 0.303 sum -4.574 5.424 -12.722 14.567 Atomic orbital electron populations 1.21934 0.94200 1.01990 1.01337 1.19334 0.95285 0.94606 0.92717 1.21954 1.01259 0.95053 1.01455 1.21673 1.01354 0.95258 0.96437 1.21679 0.99728 0.95358 0.97915 1.19346 0.95770 0.94544 0.92301 1.21938 0.95154 1.01676 1.00805 1.21977 1.01690 0.94849 1.01496 1.19354 0.99857 0.93447 0.94223 1.21367 0.98689 1.00517 0.90686 1.18438 0.96416 0.92718 0.91880 1.18727 0.99469 0.91379 0.90968 1.26388 1.25335 1.07964 0.99510 1.84196 1.57942 1.08821 1.11368 1.23830 0.96092 0.96816 0.88139 1.18964 1.30349 0.99297 0.93265 0.87906 1.26166 0.94041 1.01182 0.95263 1.68811 1.34313 1.36234 1.01612 0.85719 0.79369 0.79451 0.79104 1.19014 1.19659 1.17974 1.67256 1.26028 1.13713 1.23995 1.21088 0.99727 0.94757 0.97822 1.20923 1.01767 0.99408 0.92057 1.19344 1.01141 0.93628 0.94035 0.92645 0.92820 0.92357 0.92552 0.92823 0.92343 0.91393 0.91975 0.91874 0.91474 0.92159 0.92750 0.92579 0.92674 0.92820 0.91585 0.85064 0.85077 0.88900 0.86410 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.15 37.16 0.30 -1.14 16 2 C -0.02 -0.22 0.63 -155.82 -0.10 -0.32 16 3 C -0.14 -1.44 7.95 37.15 0.30 -1.14 16 4 C -0.11 -1.15 4.64 -26.71 -0.12 -1.27 16 5 C -0.11 -1.20 4.64 -26.70 -0.12 -1.32 16 6 C -0.02 -0.26 0.63 -155.82 -0.10 -0.36 16 7 C -0.14 -1.74 8.16 37.16 0.30 -1.43 16 8 C -0.14 -1.89 7.95 37.16 0.30 -1.59 16 9 C -0.07 -1.10 4.71 -104.63 -0.49 -1.59 16 10 C -0.09 -1.83 8.48 -39.08 -0.33 -2.16 16 11 C 0.01 0.17 5.87 -104.99 -0.62 -0.44 16 12 C 0.13 3.36 6.65 -84.39 -0.56 2.80 16 13 C -0.45 -11.03 10.41 30.36 0.32 -10.71 16 14 S 0.12 2.96 20.15 -107.50 -2.17 0.79 16 15 C 0.21 5.60 7.11 -17.04 -0.12 5.48 16 16 C -0.38 -9.69 9.44 -38.24 -0.36 -10.05 16 17 H 0.10 2.56 7.86 -52.49 -0.41 2.14 16 18 C 0.06 1.30 5.49 -17.29 -0.09 1.21 16 19 N -0.78 -18.61 10.67 55.56 0.59 -18.02 16 20 Si 0.94 17.35 29.57 -169.99 -5.03 12.32 16 21 H -0.27 -4.80 7.11 56.52 0.40 -4.39 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 23 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 24 N -0.59 -15.93 10.02 -9.50 -0.10 -16.02 16 25 C -0.11 -2.12 9.48 -39.33 -0.37 -2.49 16 26 C -0.12 -1.93 8.88 -39.48 -0.35 -2.28 16 27 C -0.08 -1.20 4.72 -104.47 -0.49 -1.69 16 28 H 0.05 0.59 8.06 -51.93 -0.42 0.17 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.65 6.47 -51.93 -0.34 0.31 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 34 H 0.07 0.74 6.25 -51.93 -0.32 0.41 16 35 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 36 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.07 0.75 6.26 -51.93 -0.33 0.42 16 38 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.69 6.46 -51.93 -0.34 0.35 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 44 H 0.13 2.72 5.94 -52.48 -0.31 2.41 16 45 H 0.13 2.93 6.89 -52.49 -0.36 2.57 16 46 H 0.30 6.33 8.29 -40.82 -0.34 6.00 16 47 H 0.12 2.09 6.66 -52.49 -0.35 1.74 16 48 H 0.11 1.51 6.32 -52.49 -0.33 1.17 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -27.81 377.12 -10.84 -38.65 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.10 Total: 7.10 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -2.72 Total: -30.52 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.50 Total: -34.04 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.17 Total: 0.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.81 -10.84 -38.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000027257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.274 kcal (2) G-P(sol) polarization free energy of solvation -27.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds