Wall clock time and date at job start Tue Mar 31 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.21454 * 2 1 4 4 C 1.52718 * 109.24407 * 240.56244 * 2 1 3 5 5 C 1.53324 * 108.40080 * 290.84932 * 4 2 1 6 6 C 1.52730 * 108.36769 * 290.08790 * 5 4 2 7 7 C 1.52999 * 109.25396 * 290.90505 * 6 5 4 8 8 C 1.53001 * 109.22177 * 171.45372 * 6 5 4 9 9 C 1.50660 * 110.58557 * 51.19257 * 6 5 4 10 10 C 1.38670 * 117.63106 * 162.45470 * 9 6 5 11 11 C 1.39149 * 120.44503 * 179.97438 * 10 9 6 12 12 C 1.48216 * 120.25624 * 179.69643 * 11 10 9 13 13 C 1.37220 * 122.46998 * 184.72331 * 12 11 10 14 14 S 1.71011 * 109.07920 * 179.71203 * 13 12 11 15 15 C 1.75983 * 90.62914 * 0.34021 * 14 13 12 16 16 C 1.39877 * 125.29542 * 179.91507 * 15 14 13 17 17 H 1.07995 * 120.00520 * 186.10484 * 16 15 14 18 18 C 1.40181 * 119.99431 * 5.83618 * 16 15 14 19 19 N 1.30724 * 120.00460 * 353.66386 * 18 16 15 20 20 Si 1.86804 * 119.99939 * 173.66948 * 18 16 15 21 21 H 1.48504 * 109.47056 * 94.97957 * 20 18 16 22 22 H 1.48493 * 109.47300 * 214.98552 * 20 18 16 23 23 H 1.48500 * 109.46909 * 334.98685 * 20 18 16 24 24 N 1.31236 * 122.47242 * 4.70892 * 12 11 10 25 25 C 1.39497 * 119.48915 * 359.42733 * 11 10 9 26 26 C 1.37653 * 119.63162 * 0.39691 * 25 11 10 27 27 C 1.37819 * 122.55205 * 342.07392 * 9 6 5 28 28 H 1.08998 * 109.46700 * 300.56071 * 1 2 3 29 29 H 1.09003 * 109.47396 * 60.55637 * 1 2 3 30 30 H 1.09002 * 109.47263 * 180.56147 * 1 2 3 31 31 H 1.09002 * 109.47111 * 179.43515 * 3 2 1 32 32 H 1.09003 * 109.47514 * 299.44079 * 3 2 1 33 33 H 1.09005 * 109.46914 * 59.44065 * 3 2 1 34 34 H 1.09004 * 109.67591 * 171.12227 * 4 2 1 35 35 H 1.08996 * 109.70713 * 50.59326 * 4 2 1 36 36 H 1.08999 * 109.68946 * 170.36865 * 5 4 2 37 37 H 1.08996 * 109.71615 * 49.82326 * 5 4 2 38 38 H 1.09002 * 109.46903 * 181.10088 * 7 6 5 39 39 H 1.08997 * 109.47118 * 301.10121 * 7 6 5 40 40 H 1.08997 * 109.46780 * 61.10333 * 7 6 5 41 41 H 1.09001 * 109.47485 * 298.92523 * 8 6 5 42 42 H 1.09000 * 109.46727 * 58.92145 * 8 6 5 43 43 H 1.08996 * 109.46959 * 178.91565 * 8 6 5 44 44 H 1.08005 * 119.77871 * 359.68407 * 10 9 6 45 45 H 1.07998 * 125.46297 * 359.97438 * 13 12 11 46 46 H 0.97002 * 120.00617 * 180.02562 * 19 18 16 47 47 H 1.08002 * 120.18624 * 180.37183 * 25 11 10 48 48 H 1.07995 * 119.63354 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4447 0.0000 4 6 2.0334 -0.7086 -1.2557 5 6 1.7040 -2.2011 -1.1341 6 6 2.5932 -2.8033 -0.0481 7 6 4.0429 -2.8238 -0.5369 8 6 2.1375 -4.2352 0.2396 9 6 2.5072 -1.9908 1.2178 10 6 2.9414 -2.5842 2.3935 11 6 2.8887 -1.8868 3.5965 12 6 3.3476 -2.5275 4.8518 13 6 3.2287 -1.9187 6.0758 14 16 3.8552 -2.9583 7.2805 15 6 4.2561 -4.1618 6.0607 16 6 4.8571 -5.3994 6.3134 17 1 5.1556 -6.0327 5.4911 18 6 5.0771 -5.8151 7.6339 19 7 4.8359 -4.9978 8.6253 20 14 5.7151 -7.5369 7.9771 21 1 7.1930 -7.4983 8.1175 22 1 5.1115 -8.0471 9.2343 23 1 5.3481 -8.4341 6.8521 24 7 3.8974 -3.7189 4.8747 25 6 2.4060 -0.5781 3.6110 26 6 1.9806 0.0034 2.4381 27 6 2.0268 -0.6993 1.2388 28 1 -0.3633 0.5225 0.8849 29 1 -0.3634 0.5052 -0.8949 30 1 -0.3634 -1.0276 0.0101 31 1 3.1235 1.4496 0.0101 32 1 1.6762 1.9541 -0.8950 33 1 1.6597 1.9597 0.8850 34 1 3.1118 -0.5767 -1.3442 35 1 1.5395 -0.2942 -2.1345 36 1 1.8974 -2.6985 -2.0845 37 1 0.6561 -2.3254 -0.8612 38 1 4.6779 -3.2710 0.2280 39 1 4.1092 -3.4108 -1.4529 40 1 4.3743 -1.8043 -0.7339 41 1 1.1078 -4.2239 0.5971 42 1 2.1983 -4.8263 -0.6742 43 1 2.7817 -4.6755 1.0006 44 1 3.3186 -3.5961 2.3762 45 1 2.8034 -0.9415 6.2509 46 1 4.9884 -5.2853 9.5391 47 1 2.3657 -0.0244 4.5374 48 1 1.6072 1.0167 2.4493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000027257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:11 Heat of formation + Delta-G solvation = 0.768193 kcal Electronic energy + Delta-G solvation = -27456.820695 eV Core-core repulsion = 23986.234877 eV Total energy + Delta-G solvation = -3470.585819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80341 -39.65357 -37.57926 -36.92208 -35.95161 -32.27776 -31.10849 -30.35047 -29.80424 -28.36591 -28.17623 -27.83847 -25.17290 -24.58963 -23.68738 -23.11570 -20.71856 -20.33543 -19.74343 -18.71521 -17.77533 -17.04288 -16.93378 -16.28381 -16.00670 -15.59914 -15.35300 -14.96472 -14.87936 -14.77094 -14.64850 -14.45196 -14.18878 -13.94679 -13.66279 -13.52825 -13.25959 -13.14827 -13.05026 -12.94354 -12.68991 -12.65632 -12.56490 -12.53431 -12.31376 -12.04637 -12.01675 -11.91648 -11.84705 -11.52440 -11.37323 -11.23114 -10.91837 -10.87986 -10.05305 -9.82726 -9.79658 -9.56516 -8.93355 -8.67014 -6.74302 0.07174 0.54233 0.80100 1.37476 1.48021 1.51224 1.57342 1.97577 2.16907 2.25354 2.88118 3.32636 3.60064 3.68102 3.82795 3.88720 3.92130 4.04020 4.28100 4.33348 4.35434 4.40866 4.48924 4.60472 4.63070 4.73584 4.75554 4.82525 4.85481 4.89838 4.93112 4.95586 4.98642 5.02796 5.03660 5.06383 5.12875 5.15975 5.20161 5.24060 5.28906 5.32903 5.35495 5.43234 5.46964 5.56088 5.67112 5.72393 5.82656 5.85982 5.95372 6.17959 6.36869 6.42523 7.74367 7.99107 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.002987 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.890699 B = 9372.206299 C =10555.510207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.020 4.020 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.105 4.105 6 C -0.021 4.021 7 C -0.135 4.135 8 C -0.141 4.141 9 C -0.069 4.069 10 C -0.105 4.105 11 C -0.036 4.036 12 C 0.126 3.874 13 C -0.468 4.468 14 S 0.100 5.900 15 C 0.172 3.828 16 C -0.401 4.401 17 H 0.101 0.899 18 C 0.021 3.979 19 N -0.798 5.798 20 Si 1.019 2.981 21 H -0.254 1.254 22 H -0.256 1.256 23 H -0.256 1.256 24 N -0.619 5.619 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.069 4.069 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.106 0.894 45 H 0.147 0.853 46 H 0.312 0.688 47 H 0.119 0.881 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 6.296 -15.948 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 C -0.196 4.196 4 C -0.146 4.146 5 C -0.143 4.143 6 C -0.021 4.021 7 C -0.192 4.192 8 C -0.198 4.198 9 C -0.069 4.069 10 C -0.125 4.125 11 C -0.039 4.039 12 C -0.012 4.012 13 C -0.612 4.612 14 S 0.360 5.640 15 C -0.080 4.080 16 C -0.443 4.443 17 H 0.119 0.881 18 C -0.200 4.200 19 N -0.426 5.426 20 Si 0.836 3.164 21 H -0.178 1.178 22 H -0.180 1.180 23 H -0.180 1.180 24 N -0.341 5.341 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.070 4.070 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.124 0.876 45 H 0.165 0.835 46 H 0.126 0.874 47 H 0.137 0.863 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.258 6.102 -14.976 17.005 hybrid contribution 0.120 -0.200 0.445 0.503 sum -5.138 5.902 -14.531 16.504 Atomic orbital electron populations 1.21931 0.92969 1.01864 1.02557 1.19464 0.96123 0.95171 0.91265 1.21956 1.00790 0.94060 1.02835 1.21709 1.01517 0.94594 0.96740 1.21680 0.98942 0.95948 0.97681 1.19443 0.96907 0.93919 0.91790 1.21914 0.94154 1.02196 1.00984 1.21950 1.00530 0.95511 1.01805 1.19700 0.98680 0.94320 0.94209 1.21288 0.99736 0.99677 0.91760 1.18540 0.99707 0.94458 0.91151 1.19315 0.98231 0.90869 0.92819 1.26491 1.26795 1.08720 0.99163 1.83884 1.59254 1.09147 1.11735 1.24327 0.96982 0.97934 0.88801 1.19342 1.31015 0.99135 0.94850 0.88089 1.27225 0.93344 1.05493 0.93895 1.68834 1.33049 1.38139 1.02568 0.84610 0.79145 0.73352 0.79273 1.17789 1.18007 1.17974 1.67319 1.27496 1.15036 1.24293 1.21181 0.99976 0.93676 0.99248 1.21273 1.00438 1.00643 0.91171 1.19896 0.98538 0.92914 0.95604 0.92958 0.90199 0.93161 0.93349 0.90356 0.92181 0.91643 0.89137 0.89563 0.91427 0.94848 0.90229 0.92075 0.93333 0.90228 0.94441 0.87617 0.83514 0.87412 0.86315 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.15 71.98 0.59 -1.76 16 2 C -0.02 -0.39 0.63 -53.03 -0.03 -0.43 16 3 C -0.14 -2.31 7.95 71.98 0.57 -1.74 16 4 C -0.11 -1.81 4.64 30.61 0.14 -1.67 16 5 C -0.11 -1.95 4.64 30.61 0.14 -1.81 16 6 C -0.02 -0.52 0.63 -53.03 -0.03 -0.55 16 7 C -0.14 -3.27 8.16 71.98 0.59 -2.68 16 8 C -0.14 -3.75 7.95 71.98 0.57 -3.18 16 9 C -0.07 -2.23 4.71 -19.87 -0.09 -2.32 16 10 C -0.11 -4.40 8.48 22.59 0.19 -4.20 16 11 C -0.04 -1.65 5.87 -20.10 -0.12 -1.77 16 12 C 0.13 6.81 6.65 41.65 0.28 7.09 16 13 C -0.47 -24.52 10.41 67.58 0.70 -23.82 16 14 S 0.10 5.40 20.15 -56.49 -1.14 4.26 16 15 C 0.17 9.98 7.11 85.13 0.60 10.58 16 16 C -0.40 -21.62 9.44 23.14 0.22 -21.40 16 17 H 0.10 5.30 7.86 -2.91 -0.02 5.27 16 18 C 0.02 0.98 5.49 85.33 0.47 1.45 16 19 N -0.80 -38.56 10.67 21.87 0.23 -38.33 16 20 Si 1.02 35.07 29.57 68.60 2.03 37.10 16 21 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 22 H -0.26 -8.16 7.11 99.48 0.71 -7.46 16 23 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 24 N -0.62 -36.07 10.02 -183.96 -1.84 -37.91 16 25 C -0.12 -4.63 9.48 22.44 0.21 -4.42 16 26 C -0.12 -3.55 8.88 22.33 0.20 -3.35 16 27 C -0.07 -1.94 4.72 -19.77 -0.09 -2.04 16 28 H 0.05 0.94 8.06 -2.39 -0.02 0.92 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.96 6.47 -2.39 -0.02 0.94 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.98 6.39 -2.38 -0.02 0.96 16 34 H 0.06 1.16 6.25 -2.39 -0.01 1.15 16 35 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 36 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 37 H 0.07 1.28 6.26 -2.39 -0.01 1.27 16 38 H 0.03 0.97 8.06 -2.39 -0.02 0.95 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.40 6.46 -2.39 -0.02 1.38 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.19 6.40 -2.39 -0.02 1.18 16 44 H 0.11 4.87 5.94 -2.91 -0.02 4.85 16 45 H 0.15 6.94 6.89 -2.91 -0.02 6.92 16 46 H 0.31 13.18 8.29 -92.71 -0.77 12.41 16 47 H 0.12 4.37 6.66 -2.91 -0.02 4.35 16 48 H 0.15 3.46 6.32 -2.91 -0.02 3.44 16 Total: -1.00 -65.84 377.12 5.36 -60.49 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.97 Total: 32.42 kcal Atomic # 6 Polarization: -63.13 SS G_CDS: 5.11 Total: -58.03 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -1.61 Total: -76.24 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.14 Total: 4.26 kcal Total: -65.84 5.36 -60.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000027257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.255 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds