Wall clock time and date at job start Tue Mar 31 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50703 * 109.47316 * 238.29976 * 3 2 1 5 5 O 1.21283 * 119.99488 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 N 1.36600 * 119.99708 * 180.27878 * 6 4 3 8 8 C 1.46903 * 110.99789 * 179.72394 * 7 6 4 9 9 H 1.08993 * 110.52047 * 179.29617 * 8 7 6 10 10 C 1.54138 * 110.57853 * 302.08125 * 8 7 6 11 11 C 1.51545 * 103.82096 * 118.51291 * 10 8 7 12 12 C 1.47055 * 125.25649 * 180.02562 * 11 10 8 13 13 C 1.40005 * 120.17790 * 359.82520 * 12 11 10 14 14 C 1.37822 * 119.81381 * 179.76373 * 13 12 11 15 15 C 1.38476 * 120.18148 * 0.50784 * 14 13 12 16 16 C 1.38480 * 120.37002 * 359.74263 * 15 14 13 17 17 C 1.37827 * 120.18016 * 359.97438 * 16 15 14 18 18 N 1.29527 * 109.46038 * 0.12065 * 11 10 8 19 19 N 1.39341 * 113.97491 * 359.91801 * 18 11 10 20 20 C 1.34775 * 125.53770 * 180.02562 * 19 18 11 21 21 O 1.21919 * 119.99794 * 179.97438 * 20 19 18 22 22 C 1.41051 * 119.99887 * 359.97438 * 20 19 18 23 23 H 1.07994 * 120.00052 * 0.02562 * 22 20 19 24 24 C 1.40234 * 119.99671 * 179.97438 * 22 20 19 25 25 N 1.30588 * 120.00195 * 0.02562 * 24 22 20 26 26 Si 1.86801 * 119.99784 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46920 * 60.00093 * 26 24 22 28 28 H 1.48494 * 109.47180 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47118 * 300.00257 * 26 24 22 30 30 H 1.08998 * 109.47254 * 118.29983 * 3 2 1 31 31 H 1.09002 * 109.47674 * 358.30218 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 33 33 H 1.00897 * 111.00271 * 55.76705 * 7 6 4 34 34 H 1.08997 * 110.52405 * 237.17357 * 10 8 7 35 35 H 1.08995 * 110.52553 * 359.92607 * 10 8 7 36 36 H 1.08009 * 120.09408 * 0.02562 * 13 12 11 37 37 H 1.08006 * 119.91355 * 180.24600 * 14 13 12 38 38 H 1.08002 * 119.81427 * 179.76233 * 15 14 13 39 39 H 1.08000 * 119.91013 * 179.97438 * 16 15 14 40 40 H 1.08001 * 120.09361 * 179.97438 * 17 16 15 41 41 H 0.96994 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1100 0.7475 1.2088 5 8 2.3216 1.2319 1.9929 6 7 4.4350 0.8779 1.4181 7 7 4.8900 1.5500 2.5169 8 6 6.3584 1.5671 2.5528 9 1 6.7129 2.1156 3.4254 10 6 6.9172 0.1306 2.5519 11 6 7.7344 0.0608 1.2776 12 6 8.4806 -1.1174 0.8112 13 6 8.4757 -2.2973 1.5649 14 6 9.1737 -3.3986 1.1183 15 6 9.8872 -3.3370 -0.0669 16 6 9.9015 -2.1722 -0.8158 17 6 9.2040 -1.0637 -0.3863 18 7 7.6752 1.2000 0.6641 19 7 6.8992 2.1553 1.3174 20 6 6.6794 3.4135 0.8873 21 8 5.9800 4.1679 1.5416 22 6 7.2585 3.8574 -0.3198 23 1 7.8777 3.1890 -0.8996 24 6 7.0293 5.1664 -0.7676 25 7 6.2801 5.9745 -0.0668 26 14 7.7956 5.7542 -2.3666 27 1 7.3185 4.9032 -3.4863 28 1 7.4034 7.1648 -2.6144 29 1 9.2745 5.6617 -2.2701 30 1 2.9711 0.4880 -0.9048 31 1 2.9718 -1.0264 0.0304 32 1 5.0655 0.4908 0.7908 33 1 4.5121 1.1546 3.3648 34 1 7.5504 -0.0337 3.4238 35 1 6.1047 -0.5955 2.5262 36 1 7.9230 -2.3457 2.4916 37 1 9.1678 -4.3109 1.6964 38 1 10.4352 -4.2023 -0.4094 39 1 10.4607 -2.1323 -1.7388 40 1 9.2165 -0.1559 -0.9712 41 1 6.1219 6.8800 -0.3764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000048179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:57 Heat of formation + Delta-G solvation = 79.642880 kcal Electronic energy + Delta-G solvation = -28986.773628 eV Core-core repulsion = 24869.774515 eV Total energy + Delta-G solvation = -4116.999113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61588 -39.43392 -38.70586 -36.65603 -36.41293 -35.56104 -32.86792 -32.28368 -31.94455 -31.07694 -30.30071 -29.50359 -27.43411 -26.73932 -23.64376 -22.81377 -22.00143 -21.42162 -20.19027 -19.44883 -18.22273 -17.58089 -17.15619 -16.95730 -16.34712 -15.84714 -15.65497 -15.43035 -15.28049 -14.84570 -14.43029 -14.17660 -14.03914 -13.64733 -13.50377 -13.32784 -13.30988 -12.88249 -12.87886 -12.78473 -12.65799 -12.42318 -12.10026 -11.76979 -11.42731 -11.36600 -11.30131 -11.14073 -10.87425 -10.73838 -10.52919 -10.40720 -9.92735 -9.79355 -9.16156 -9.01318 -8.93181 -7.98922 -7.79015 -7.40384 -6.43751 -4.93078 0.89993 1.36854 2.34302 2.54526 2.60089 2.80375 3.06003 3.10469 3.11921 3.13104 3.36757 3.82624 3.86131 4.00120 4.25726 4.36197 4.41504 4.56693 4.77555 4.85022 4.89272 4.94971 4.97141 5.08995 5.11435 5.19438 5.36869 5.50680 5.60316 5.65903 5.78804 5.88938 5.99418 6.14869 6.43299 6.49448 6.53761 6.66706 6.91310 7.23289 7.29278 7.48588 7.61165 7.87197 7.95161 8.12634 8.51255 8.77481 9.22151 10.30042 10.49254 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.006031 B = 0.005121 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4641.237630 B = 5466.772275 C = 8473.510084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.226 3.774 3 C -0.040 4.040 4 C 0.519 3.481 5 O -0.522 6.522 6 N -0.559 5.559 7 N -0.424 5.424 8 C 0.260 3.740 9 H 0.119 0.881 10 C -0.156 4.156 11 C 0.033 3.967 12 C 0.000 4.000 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.123 4.123 16 C -0.119 4.119 17 C -0.092 4.092 18 N -0.171 5.171 19 N -0.452 5.452 20 C 0.569 3.431 21 O -0.538 6.538 22 C -0.513 4.513 23 H 0.080 0.920 24 C 0.084 3.916 25 N -0.745 5.745 26 Si 0.915 3.085 27 H -0.265 1.265 28 H -0.279 1.279 29 H -0.265 1.265 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.401 0.599 33 H 0.347 0.653 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -19.248 -0.457 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.093 4.093 3 C -0.084 4.084 4 C 0.302 3.698 5 O -0.397 6.397 6 N -0.304 5.304 7 N -0.152 5.152 8 C 0.064 3.936 9 H 0.136 0.864 10 C -0.198 4.198 11 C -0.156 4.156 12 C -0.002 4.002 13 C -0.127 4.127 14 C -0.140 4.140 15 C -0.142 4.142 16 C -0.137 4.137 17 C -0.113 4.113 18 N 0.016 4.984 19 N -0.281 5.281 20 C 0.382 3.618 21 O -0.415 6.415 22 C -0.548 4.548 23 H 0.098 0.902 24 C -0.140 4.140 25 N -0.372 5.372 26 Si 0.739 3.261 27 H -0.189 1.189 28 H -0.204 1.204 29 H -0.189 1.189 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.240 0.760 33 H 0.169 0.831 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.536 -16.699 -0.569 17.313 hybrid contribution 1.266 -1.107 0.086 1.684 sum 5.801 -17.806 -0.483 18.734 Atomic orbital electron populations 1.81169 1.12532 1.08056 1.07739 1.27952 0.94144 0.93640 0.93608 1.19042 0.84055 1.04717 1.00570 1.19761 0.81516 0.81509 0.87063 1.90791 1.54490 1.47667 1.46726 1.44830 1.06623 1.55958 1.22961 1.61999 1.07531 1.47806 0.97867 1.22992 0.84822 0.91977 0.93800 0.86372 1.22821 1.00491 0.97797 0.98704 1.22987 1.03252 0.93373 0.96010 1.17870 0.96923 0.90521 0.94887 1.21177 0.99887 0.92196 0.99482 1.20983 0.97995 0.98229 0.96762 1.21251 0.99588 0.98010 0.95345 1.21104 0.99561 0.93075 0.99999 1.21473 0.95421 0.99002 0.95357 1.74854 1.05474 0.97538 1.20531 1.51438 1.46197 1.11398 1.19104 1.16789 0.82305 0.75592 0.87119 1.90808 1.42361 1.49347 1.58935 1.19990 1.31102 0.97862 1.05870 0.90167 1.25871 0.93637 0.96316 0.98141 1.69980 1.26197 1.05843 1.35212 0.86295 0.80200 0.78002 0.81611 1.18933 1.20402 1.18949 0.84033 0.84535 0.75953 0.83057 0.88352 0.89368 0.85965 0.86104 0.86346 0.85925 0.84745 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.82 18.54 42.15 0.78 -6.04 16 2 C 0.23 3.03 14.67 -20.76 -0.30 2.73 16 3 C -0.04 -0.38 6.19 -30.67 -0.19 -0.57 16 4 C 0.52 7.68 7.88 -10.98 -0.09 7.59 16 5 O -0.52 -10.22 16.24 5.55 0.09 -10.13 16 6 N -0.56 -8.30 5.12 31.22 0.16 -8.14 16 7 N -0.42 -7.18 6.50 -6.58 -0.04 -7.22 16 8 C 0.26 4.29 3.93 -125.92 -0.49 3.80 16 9 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 10 C -0.16 -1.81 5.18 -26.87 -0.14 -1.95 16 11 C 0.03 0.45 6.76 -79.58 -0.54 -0.09 16 12 C 0.00 0.00 5.88 -105.00 -0.62 -0.62 16 13 C -0.11 -0.98 9.61 -39.07 -0.38 -1.36 16 14 C -0.12 -0.99 10.03 -39.65 -0.40 -1.39 16 15 C -0.12 -1.02 10.05 -39.40 -0.40 -1.41 16 16 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 17 C -0.09 -1.06 9.69 -39.07 -0.38 -1.44 16 18 N -0.17 -3.06 10.62 35.19 0.37 -2.68 16 19 N -0.45 -9.42 3.19 -58.72 -0.19 -9.61 16 20 C 0.57 15.22 7.57 -15.19 -0.11 15.11 16 21 O -0.54 -16.51 15.05 4.99 0.08 -16.43 16 22 C -0.51 -13.71 9.01 -37.77 -0.34 -14.05 16 23 H 0.08 2.02 7.40 -52.49 -0.39 1.63 16 24 C 0.08 2.20 5.50 -17.33 -0.10 2.11 16 25 N -0.74 -21.19 11.71 55.56 0.65 -20.54 16 26 Si 0.91 19.16 29.56 -169.99 -5.02 14.13 16 27 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 28 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 29 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 30 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 5.42 6.94 -185.16 -1.28 4.13 16 33 H 0.35 5.02 8.82 -181.37 -1.60 3.43 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.84 7.45 -51.93 -0.39 0.45 16 36 H 0.12 0.90 7.48 -52.48 -0.39 0.51 16 37 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.68 7.81 -52.49 -0.41 1.27 16 41 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -38.22 370.73 -8.96 -47.18 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.55 Total: 6.96 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -4.87 Total: 6.93 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 1.74 Total: -54.23 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.17 Total: -26.56 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.22 -8.96 -47.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000048179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.824 kcal (2) G-P(sol) polarization free energy of solvation -38.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds