Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50701 * 109.46803 * 87.41575 * 3 2 1 5 5 O 1.21281 * 120.00509 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99947 * 179.97438 * 4 3 2 7 7 N 1.36598 * 120.00344 * 179.97438 * 6 4 3 8 8 C 1.46908 * 111.00353 * 180.02562 * 7 6 4 9 9 H 1.08994 * 110.63452 * 328.58653 * 8 7 6 10 10 C 1.54138 * 110.68045 * 205.77872 * 8 7 6 11 11 C 1.51198 * 103.98659 * 241.74488 * 10 8 7 12 12 C 1.47048 * 125.28575 * 179.81288 * 11 10 8 13 13 C 1.40005 * 120.18098 * 359.70725 * 12 11 10 14 14 C 1.37833 * 119.81072 * 179.76847 * 13 12 11 15 15 C 1.38468 * 120.18304 * 0.50662 * 14 13 12 16 16 C 1.38479 * 120.37168 * 359.74524 * 15 14 13 17 17 C 1.37824 * 120.17936 * 359.97438 * 16 15 14 18 18 N 1.29523 * 109.42310 * 359.77530 * 11 10 8 19 19 N 1.39333 * 113.98141 * 0.02562 * 18 11 10 20 20 C 1.34777 * 125.54038 * 179.97438 * 19 18 11 21 21 O 1.21923 * 119.99695 * 180.02562 * 20 19 18 22 22 C 1.41054 * 119.99927 * 0.29424 * 20 19 18 23 23 H 1.07991 * 119.99774 * 359.73045 * 22 20 19 24 24 C 1.40223 * 119.99703 * 179.72660 * 22 20 19 25 25 N 1.30594 * 120.00327 * 0.02562 * 24 22 20 26 26 Si 1.86805 * 119.99868 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47014 * 89.99812 * 26 24 22 28 28 H 1.48495 * 109.47331 * 210.00053 * 26 24 22 29 29 H 1.48497 * 109.46899 * 330.00192 * 26 24 22 30 30 H 1.08992 * 109.47418 * 327.41625 * 3 2 1 31 31 H 1.08994 * 109.47045 * 207.41071 * 3 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 6 4 3 33 33 H 1.00907 * 110.99866 * 56.05641 * 7 6 4 34 34 H 1.09004 * 110.71365 * 123.02685 * 10 8 7 35 35 H 1.08992 * 110.45336 * 0.33994 * 10 8 7 36 36 H 1.08002 * 120.09571 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.90538 * 180.25316 * 14 13 12 38 38 H 1.07999 * 119.81931 * 179.76382 * 15 14 13 39 39 H 1.07989 * 119.91123 * 180.02562 * 16 15 14 40 40 H 1.08006 * 120.09197 * 180.02562 * 17 16 15 41 41 H 0.96998 * 119.99671 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1103 -0.0632 -1.4194 5 8 2.3222 -0.1046 -2.3403 6 7 4.4354 -0.0732 -1.6655 7 7 4.8907 -0.1316 -2.9520 8 6 6.3593 -0.1326 -2.9913 9 1 6.7662 0.4379 -2.1564 10 6 6.8684 0.4344 -4.3311 11 6 7.6303 -0.7162 -4.9489 12 6 8.3129 -0.6813 -6.2509 13 6 8.2851 0.4821 -7.0293 14 6 8.9316 0.5079 -8.2463 15 6 9.5984 -0.6159 -8.7043 16 6 9.6264 -1.7723 -7.9430 17 6 8.9899 -1.8130 -6.7213 18 7 7.5888 -1.7371 -4.1529 19 7 6.8756 -1.5102 -2.9776 20 6 6.6855 -2.4083 -1.9908 21 8 6.0414 -2.1006 -1.0024 22 6 7.2365 -3.7022 -2.0990 23 1 7.8071 -3.9746 -2.9745 24 6 7.0435 -4.6347 -1.0697 25 7 6.3532 -4.3054 -0.0112 26 14 7.7739 -6.3481 -1.2127 27 1 9.1381 -6.3552 -0.6262 28 1 6.9157 -7.3146 -0.4815 29 1 7.8484 -6.7365 -2.6440 30 1 2.9718 -0.8650 0.5534 31 1 2.9709 0.9131 0.4731 32 1 5.0658 -0.0397 -0.9290 33 1 4.5146 0.6252 -3.5034 34 1 7.5298 1.2846 -4.1635 35 1 6.0305 0.7227 -4.9657 36 1 7.7620 1.3582 -6.6752 37 1 8.9146 1.4058 -8.8461 38 1 10.0998 -0.5903 -9.6605 39 1 10.1490 -2.6443 -8.3073 40 1 9.0130 -2.7156 -6.1285 41 1 6.2195 -4.9506 0.7006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000048180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = 75.214565 kcal Electronic energy + Delta-G solvation = -28580.149974 eV Core-core repulsion = 24462.958834 eV Total energy + Delta-G solvation = -4117.191140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23579 -39.38944 -38.60143 -36.53436 -36.45160 -35.57906 -32.84572 -32.23097 -31.81332 -30.97733 -30.27303 -29.39076 -27.17847 -26.77848 -23.58793 -22.78165 -21.99878 -21.10937 -20.11036 -19.39148 -18.03980 -17.21222 -16.97625 -16.85645 -16.64839 -15.91320 -15.72714 -15.36557 -15.10639 -14.75162 -14.34621 -14.02638 -13.84750 -13.61103 -13.40605 -13.25390 -13.21821 -12.81754 -12.74002 -12.69000 -12.50474 -12.25909 -12.04161 -11.59605 -11.37519 -11.26747 -11.23677 -11.09290 -10.83403 -10.80108 -10.56092 -10.39549 -9.77655 -9.66719 -9.11548 -8.91775 -8.89957 -8.04478 -7.72810 -7.31534 -6.49416 -4.94597 1.02050 1.47223 2.47523 2.70793 2.77126 2.94870 3.03693 3.11132 3.14398 3.22698 3.49936 3.97193 3.99272 4.00224 4.28799 4.46134 4.54215 4.69844 4.86213 4.98151 5.00900 5.07422 5.13476 5.17172 5.18949 5.40873 5.46964 5.56712 5.61701 5.71484 5.79704 5.91856 6.09531 6.26077 6.53054 6.59605 6.65144 6.76610 7.01758 7.20965 7.48774 7.62019 7.80574 7.89380 8.04949 8.14251 8.69592 8.76080 9.21928 10.22850 10.42544 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007632 B = 0.004033 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.870272 B = 6941.330021 C =10176.373479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.229 3.771 3 C -0.039 4.039 4 C 0.523 3.477 5 O -0.539 6.539 6 N -0.542 5.542 7 N -0.440 5.440 8 C 0.259 3.741 9 H 0.073 0.927 10 C -0.117 4.117 11 C 0.043 3.957 12 C 0.003 3.997 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.120 4.120 17 C -0.093 4.093 18 N -0.170 5.170 19 N -0.447 5.447 20 C 0.576 3.424 21 O -0.566 6.566 22 C -0.508 4.508 23 H 0.080 0.920 24 C 0.086 3.914 25 N -0.746 5.746 26 Si 0.914 3.086 27 H -0.269 1.269 28 H -0.277 1.277 29 H -0.261 1.261 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.415 0.585 33 H 0.343 0.657 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 10.934 -7.754 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.089 4.089 3 C -0.083 4.083 4 C 0.305 3.695 5 O -0.416 6.416 6 N -0.288 5.288 7 N -0.170 5.170 8 C 0.064 3.936 9 H 0.090 0.910 10 C -0.158 4.158 11 C -0.146 4.146 12 C 0.001 3.999 13 C -0.128 4.128 14 C -0.140 4.140 15 C -0.143 4.143 16 C -0.138 4.138 17 C -0.113 4.113 18 N 0.018 4.982 19 N -0.274 5.274 20 C 0.390 3.610 21 O -0.446 6.446 22 C -0.543 4.543 23 H 0.099 0.901 24 C -0.137 4.137 25 N -0.374 5.374 26 Si 0.738 3.262 27 H -0.194 1.194 28 H -0.203 1.203 29 H -0.185 1.185 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.257 0.743 33 H 0.167 0.833 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.152 0.848 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.593 9.253 -7.171 12.575 hybrid contribution 1.073 0.785 0.322 1.368 sum 5.667 10.038 -6.849 13.408 Atomic orbital electron populations 1.81146 1.12633 1.08649 1.07904 1.28070 0.94262 0.93372 0.93238 1.19036 0.83610 1.08367 0.97295 1.19716 0.81616 0.78067 0.90054 1.90750 1.54907 1.50107 1.45816 1.44857 1.06849 1.73650 1.03472 1.61465 1.07720 1.49591 0.98252 1.22651 0.85531 0.88157 0.97242 0.90950 1.22047 1.00590 0.98683 0.94463 1.22762 1.03299 0.92689 0.95867 1.17866 0.97197 0.94302 0.90573 1.21178 0.99873 0.97121 0.94582 1.20970 0.98428 0.98436 0.96158 1.21232 0.99911 0.93432 0.99772 1.21087 0.99805 0.98161 0.94717 1.21467 0.95806 0.98207 0.95800 1.74752 1.05882 1.23441 0.94078 1.51002 1.49536 1.11317 1.15565 1.16593 0.81368 0.83821 0.79187 1.90588 1.45961 1.78347 1.29690 1.20057 1.33373 0.95454 1.05403 0.90133 1.25840 0.93365 1.00330 0.94148 1.69958 1.27435 1.34907 1.05080 0.86244 0.79303 0.80999 0.79676 1.19447 1.20257 1.18451 0.83519 0.84733 0.74307 0.83334 0.88410 0.88485 0.85859 0.86099 0.86379 0.85965 0.84809 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.42 18.54 42.15 0.78 -6.64 16 2 C 0.23 3.39 14.67 -20.76 -0.30 3.08 16 3 C -0.04 -0.45 6.19 -30.67 -0.19 -0.64 16 4 C 0.52 8.42 7.88 -10.99 -0.09 8.33 16 5 O -0.54 -10.95 16.25 5.56 0.09 -10.86 16 6 N -0.54 -8.78 4.84 31.22 0.15 -8.63 16 7 N -0.44 -7.52 6.70 -6.58 -0.04 -7.57 16 8 C 0.26 4.33 3.71 -125.92 -0.47 3.86 16 9 H 0.07 1.13 7.76 -51.93 -0.40 0.72 16 10 C -0.12 -1.51 5.73 -27.04 -0.15 -1.67 16 11 C 0.04 0.68 7.19 -79.75 -0.57 0.11 16 12 C 0.00 0.04 5.88 -105.00 -0.62 -0.58 16 13 C -0.11 -1.15 9.61 -39.07 -0.38 -1.52 16 14 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 15 C -0.12 -1.19 10.04 -39.41 -0.40 -1.59 16 16 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 17 C -0.09 -1.24 9.69 -39.07 -0.38 -1.62 16 18 N -0.17 -3.41 10.74 35.11 0.38 -3.03 16 19 N -0.45 -9.75 3.81 -58.72 -0.22 -9.97 16 20 C 0.58 15.09 7.57 -15.19 -0.11 14.98 16 21 O -0.57 -15.20 12.68 4.99 0.06 -15.14 16 22 C -0.51 -13.69 9.01 -37.77 -0.34 -14.03 16 23 H 0.08 2.12 7.40 -52.49 -0.39 1.73 16 24 C 0.09 2.24 5.50 -17.33 -0.10 2.14 16 25 N -0.75 -20.05 11.72 55.56 0.65 -19.40 16 26 Si 0.91 19.20 29.56 -169.99 -5.03 14.17 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 29 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 30 H 0.15 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.41 6.43 6.81 -185.15 -1.26 5.17 16 33 H 0.34 5.01 8.06 -181.36 -1.46 3.54 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.09 7.53 -51.93 -0.39 0.70 16 36 H 0.12 1.05 7.48 -52.49 -0.39 0.66 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.94 7.81 -52.48 -0.41 1.53 16 41 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -36.44 368.61 -8.89 -45.33 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.38 Total: 8.58 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -4.89 Total: 7.60 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 1.69 Total: -55.24 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.15 Total: -26.00 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.44 -8.89 -45.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000048180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.545 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds