Wall clock time and date at job start Tue Mar 31 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50701 * 109.46803 * 87.41575 * 3 2 1 5 5 O 1.21281 * 120.00509 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99947 * 179.97438 * 4 3 2 7 7 N 1.36598 * 120.00344 * 179.97438 * 6 4 3 8 8 C 1.46908 * 111.00353 * 180.02562 * 7 6 4 9 9 H 1.08994 * 110.63452 * 328.58653 * 8 7 6 10 10 C 1.54138 * 110.68045 * 205.77872 * 8 7 6 11 11 C 1.51198 * 103.98659 * 241.74488 * 10 8 7 12 12 C 1.47048 * 125.28575 * 179.81288 * 11 10 8 13 13 C 1.40005 * 120.18098 * 359.70725 * 12 11 10 14 14 C 1.37833 * 119.81072 * 179.76847 * 13 12 11 15 15 C 1.38468 * 120.18304 * 0.50662 * 14 13 12 16 16 C 1.38479 * 120.37168 * 359.74524 * 15 14 13 17 17 C 1.37824 * 120.17936 * 359.97438 * 16 15 14 18 18 N 1.29523 * 109.42310 * 359.77530 * 11 10 8 19 19 N 1.39333 * 113.98141 * 0.02562 * 18 11 10 20 20 C 1.34777 * 125.54038 * 179.97438 * 19 18 11 21 21 O 1.21923 * 119.99695 * 180.02562 * 20 19 18 22 22 C 1.41054 * 119.99927 * 0.29424 * 20 19 18 23 23 H 1.07991 * 119.99774 * 359.73045 * 22 20 19 24 24 C 1.40223 * 119.99703 * 179.72660 * 22 20 19 25 25 N 1.30594 * 120.00327 * 0.02562 * 24 22 20 26 26 Si 1.86805 * 119.99868 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47014 * 89.99812 * 26 24 22 28 28 H 1.48495 * 109.47331 * 210.00053 * 26 24 22 29 29 H 1.48497 * 109.46899 * 330.00192 * 26 24 22 30 30 H 1.08992 * 109.47418 * 327.41625 * 3 2 1 31 31 H 1.08994 * 109.47045 * 207.41071 * 3 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 6 4 3 33 33 H 1.00907 * 110.99866 * 56.05641 * 7 6 4 34 34 H 1.09004 * 110.71365 * 123.02685 * 10 8 7 35 35 H 1.08992 * 110.45336 * 0.33994 * 10 8 7 36 36 H 1.08002 * 120.09571 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.90538 * 180.25316 * 14 13 12 38 38 H 1.07999 * 119.81931 * 179.76382 * 15 14 13 39 39 H 1.07989 * 119.91123 * 180.02562 * 16 15 14 40 40 H 1.08006 * 120.09197 * 180.02562 * 17 16 15 41 41 H 0.96998 * 119.99671 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1103 -0.0632 -1.4194 5 8 2.3222 -0.1046 -2.3403 6 7 4.4354 -0.0732 -1.6655 7 7 4.8907 -0.1316 -2.9520 8 6 6.3593 -0.1326 -2.9913 9 1 6.7662 0.4379 -2.1564 10 6 6.8684 0.4344 -4.3311 11 6 7.6303 -0.7162 -4.9489 12 6 8.3129 -0.6813 -6.2509 13 6 8.2851 0.4821 -7.0293 14 6 8.9316 0.5079 -8.2463 15 6 9.5984 -0.6159 -8.7043 16 6 9.6264 -1.7723 -7.9430 17 6 8.9899 -1.8130 -6.7213 18 7 7.5888 -1.7371 -4.1529 19 7 6.8756 -1.5102 -2.9776 20 6 6.6855 -2.4083 -1.9908 21 8 6.0414 -2.1006 -1.0024 22 6 7.2365 -3.7022 -2.0990 23 1 7.8071 -3.9746 -2.9745 24 6 7.0435 -4.6347 -1.0697 25 7 6.3532 -4.3054 -0.0112 26 14 7.7739 -6.3481 -1.2127 27 1 9.1381 -6.3552 -0.6262 28 1 6.9157 -7.3146 -0.4815 29 1 7.8484 -6.7365 -2.6440 30 1 2.9718 -0.8650 0.5534 31 1 2.9709 0.9131 0.4731 32 1 5.0658 -0.0397 -0.9290 33 1 4.5146 0.6252 -3.5034 34 1 7.5298 1.2846 -4.1635 35 1 6.0305 0.7227 -4.9657 36 1 7.7620 1.3582 -6.6752 37 1 8.9146 1.4058 -8.8461 38 1 10.0998 -0.5903 -9.6605 39 1 10.1490 -2.6443 -8.3073 40 1 9.0130 -2.7156 -6.1285 41 1 6.2195 -4.9506 0.7006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000048180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:00 Heat of formation + Delta-G solvation = 48.726592 kcal Electronic energy + Delta-G solvation = -28581.298579 eV Core-core repulsion = 24462.958834 eV Total energy + Delta-G solvation = -4118.339744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55318 -40.63709 -39.65005 -38.25403 -37.70784 -36.90905 -34.72324 -33.50613 -33.07729 -31.88687 -31.38682 -30.61971 -28.62844 -28.40032 -24.82773 -23.89234 -23.06851 -22.36731 -21.48391 -20.75193 -19.35173 -18.57698 -18.42545 -17.96831 -17.82732 -17.44789 -17.07774 -16.51051 -16.28960 -16.01671 -15.63713 -15.27645 -15.09956 -14.86914 -14.56273 -14.44628 -14.34377 -14.33799 -14.19006 -13.89609 -13.52327 -13.47167 -13.29387 -13.01344 -12.87186 -12.68917 -12.63846 -12.29100 -12.11618 -12.07914 -12.01444 -11.85240 -11.10411 -10.98220 -10.94023 -10.08372 -9.92501 -9.75762 -9.03691 -8.73070 -8.38574 -6.93505 0.02503 0.62234 1.27733 1.34002 1.37619 1.51222 1.58420 1.60499 1.74048 1.94384 2.14528 2.29608 2.43907 2.91985 3.07671 3.27095 3.35331 3.49019 3.68531 3.77287 3.85964 4.06230 4.22488 4.23170 4.39341 4.40011 4.50702 4.59560 4.65252 4.66038 4.82545 4.96761 5.24582 5.27007 5.28250 5.52995 5.67925 5.70678 5.72472 6.05877 6.17125 6.22678 6.23825 6.45568 6.57891 6.66358 6.80301 7.42842 7.53792 8.35446 8.54693 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007632 B = 0.004033 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.870272 B = 6941.330021 C =10176.373479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.248 3.752 3 C -0.027 4.027 4 C 0.517 3.483 5 O -0.589 6.589 6 N -0.538 5.538 7 N -0.463 5.463 8 C 0.257 3.743 9 H 0.082 0.918 10 C -0.109 4.109 11 C 0.082 3.918 12 C -0.035 4.035 13 C -0.094 4.094 14 C -0.120 4.120 15 C -0.112 4.112 16 C -0.129 4.129 17 C -0.112 4.112 18 N -0.242 5.242 19 N -0.472 5.472 20 C 0.569 3.431 21 O -0.588 6.588 22 C -0.548 4.548 23 H 0.070 0.930 24 C 0.042 3.958 25 N -0.784 5.784 26 Si 0.984 3.016 27 H -0.257 1.257 28 H -0.267 1.267 29 H -0.263 1.263 30 H 0.161 0.839 31 H 0.193 0.807 32 H 0.418 0.582 33 H 0.357 0.643 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 13.147 -9.824 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.070 4.070 3 C -0.069 4.069 4 C 0.303 3.697 5 O -0.469 6.469 6 N -0.282 5.282 7 N -0.195 5.195 8 C 0.063 3.937 9 H 0.099 0.901 10 C -0.150 4.150 11 C -0.109 4.109 12 C -0.037 4.037 13 C -0.115 4.115 14 C -0.138 4.138 15 C -0.131 4.131 16 C -0.147 4.147 17 C -0.133 4.133 18 N -0.051 5.051 19 N -0.298 5.298 20 C 0.382 3.618 21 O -0.471 6.471 22 C -0.583 4.583 23 H 0.088 0.912 24 C -0.177 4.177 25 N -0.412 5.412 26 Si 0.805 3.195 27 H -0.182 1.182 28 H -0.191 1.191 29 H -0.188 1.188 30 H 0.178 0.822 31 H 0.210 0.790 32 H 0.261 0.739 33 H 0.182 0.818 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.323 11.497 -9.267 16.063 hybrid contribution 0.697 0.280 0.615 0.971 sum 7.020 11.777 -8.652 16.212 Atomic orbital electron populations 1.81153 1.14335 1.10641 1.09467 1.28631 0.94884 0.91741 0.91716 1.19252 0.81287 1.11814 0.94585 1.20462 0.81089 0.76807 0.91391 1.90727 1.55870 1.52522 1.47752 1.44894 1.07029 1.72972 1.03352 1.61261 1.08327 1.50790 0.99127 1.22874 0.85230 0.85946 0.99637 0.90115 1.22223 1.01716 0.98478 0.92548 1.23542 0.99698 0.92424 0.95210 1.18022 0.99256 0.95948 0.90484 1.21516 0.99010 0.96538 0.94399 1.21440 0.97025 0.99607 0.95742 1.21688 0.98468 0.92533 1.00375 1.21310 0.99693 0.99750 0.93921 1.21461 0.97210 0.97676 0.96943 1.74808 1.09301 1.25978 0.95020 1.50366 1.50928 1.12601 1.15860 1.16524 0.80876 0.84526 0.79889 1.90524 1.46415 1.79377 1.30739 1.20366 1.34781 0.97244 1.05876 0.91165 1.26750 0.93394 1.04160 0.93444 1.70030 1.28777 1.36538 1.05899 0.85201 0.79012 0.75906 0.79423 1.18151 1.19113 1.18755 0.82170 0.78971 0.73935 0.81766 0.84154 0.85932 0.83049 0.82502 0.83213 0.84485 0.87556 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -16.81 18.54 20.01 0.37 -16.44 16 2 C 0.25 7.21 14.67 89.44 1.31 8.52 16 3 C -0.03 -0.56 6.19 28.04 0.17 -0.39 16 4 C 0.52 16.53 7.88 87.66 0.69 17.22 16 5 O -0.59 -24.23 16.25 -3.03 -0.05 -24.28 16 6 N -0.54 -17.32 4.84 -173.53 -0.84 -18.16 16 7 N -0.46 -15.78 6.70 -174.73 -1.17 -16.95 16 8 C 0.26 8.50 3.71 129.56 0.48 8.98 16 9 H 0.08 2.47 7.76 -2.39 -0.02 2.45 16 10 C -0.11 -2.56 5.73 30.39 0.17 -2.39 16 11 C 0.08 2.53 7.19 45.37 0.33 2.86 16 12 C -0.04 -0.90 5.88 -20.11 -0.12 -1.02 16 13 C -0.09 -1.64 9.61 22.60 0.22 -1.43 16 14 C -0.12 -1.68 10.03 22.23 0.22 -1.45 16 15 C -0.11 -1.68 10.04 22.38 0.22 -1.46 16 16 C -0.13 -2.58 10.03 22.23 0.22 -2.36 16 17 C -0.11 -3.03 9.69 22.60 0.22 -2.81 16 18 N -0.24 -10.14 10.74 -42.85 -0.46 -10.60 16 19 N -0.47 -21.36 3.81 -457.81 -1.75 -23.11 16 20 C 0.57 31.33 7.57 84.93 0.64 31.97 16 21 O -0.59 -32.86 12.68 -5.07 -0.06 -32.92 16 22 C -0.55 -31.19 9.01 23.44 0.21 -30.98 16 23 H 0.07 3.97 7.40 -2.91 -0.02 3.95 16 24 C 0.04 2.26 5.50 85.36 0.47 2.73 16 25 N -0.78 -43.62 11.72 21.87 0.26 -43.36 16 26 Si 0.98 40.71 29.56 68.60 2.03 42.73 16 27 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 28 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 29 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 30 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.19 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.42 12.90 6.81 -215.49 -1.47 11.43 16 33 H 0.36 10.11 8.06 -210.55 -1.70 8.41 16 34 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.12 2.32 7.53 -2.39 -0.02 2.30 16 36 H 0.15 1.74 7.48 -2.91 -0.02 1.72 16 37 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.14 2.23 8.06 -2.92 -0.02 2.21 16 40 H 0.11 3.37 7.81 -2.91 -0.02 3.34 16 41 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -87.39 368.61 1.75 -85.64 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -2.04 Total: 29.45 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 5.47 Total: 28.00 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -3.59 Total: -128.61 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -0.11 Total: -57.21 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -87.39 1.75 -85.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000048180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.367 kcal (2) G-P(sol) polarization free energy of solvation -87.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds