Wall clock time and date at job start Tue Mar 31 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30609 * 1 3 3 Si 1.86800 * 120.00311 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00342 * 3 2 1 5 5 H 1.48502 * 109.46821 * 29.99729 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99912 * 3 2 1 7 7 C 1.40189 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.40505 * 119.99822 * 359.97438 * 7 2 1 10 10 O 1.22004 * 120.00332 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99818 * 180.02562 * 9 7 2 12 12 N 1.40105 * 120.00003 * 179.97438 * 11 9 7 13 13 C 1.30781 * 119.99738 * 179.97438 * 12 11 9 14 14 C 1.46616 * 119.99670 * 179.97438 * 13 12 11 15 15 C 1.40271 * 120.12703 * 180.02562 * 14 13 12 16 16 C 1.37834 * 119.89457 * 180.02562 * 15 14 13 17 17 C 1.40009 * 120.04285 * 359.97438 * 16 15 14 18 18 C 1.39016 * 120.13239 * 0.02562 * 17 16 15 19 19 C 1.37708 * 120.24192 * 359.72251 * 18 17 16 20 20 Br 1.89101 * 120.03221 * 180.27050 * 19 18 17 21 21 O 1.36301 * 108.51456 * 180.02562 * 17 16 15 22 22 C 1.43954 * 105.55765 * 342.62663 * 21 17 16 23 23 O 1.36516 * 131.43697 * 179.97438 * 16 15 14 24 24 H 0.97000 * 120.00461 * 0.02562 * 1 2 3 25 25 H 0.97004 * 120.00305 * 0.27077 * 11 9 7 26 26 H 1.07999 * 120.00303 * 0.02562 * 13 12 11 27 27 H 1.08006 * 120.05099 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.87603 * 180.02562 * 18 17 16 29 29 H 1.09007 * 110.55204 * 268.73647 * 22 21 17 30 30 H 1.08996 * 110.55109 * 145.91371 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4876 2.0464 -1.4001 5 1 1.4376 2.6526 0.7000 6 1 3.5377 1.4401 0.7000 7 6 2.0070 -1.2141 -0.0005 8 1 3.0870 -1.2141 -0.0001 9 6 1.3044 -2.4309 -0.0005 10 8 0.0844 -2.4309 0.0004 11 7 1.9783 -3.5981 -0.0005 12 7 1.2777 -4.8114 0.0000 13 6 1.9317 -5.9440 -0.0005 14 6 1.1986 -7.2137 0.0006 15 6 1.8972 -8.4300 0.0006 16 6 1.2031 -9.6209 0.0012 17 6 -0.1969 -9.6162 0.0023 18 6 -0.8908 -8.4116 0.0022 19 6 -0.2061 -7.2168 0.0069 20 35 -1.1559 -5.5817 0.0146 21 8 -0.6341 -10.9072 0.0032 22 6 0.4954 -11.6976 -0.4115 23 8 1.6324 -10.9168 0.0008 24 1 -0.4851 0.8400 -0.0004 25 1 2.9483 -3.5981 0.0034 26 1 3.0117 -5.9440 -0.0009 27 1 2.9772 -8.4334 0.0002 28 1 -1.9708 -8.4128 0.0035 29 1 0.4939 -11.8291 -1.4936 30 1 0.4918 -12.6640 0.0925 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000221883.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:52 Heat of formation + Delta-G solvation = -33.057420 kcal Electronic energy + Delta-G solvation = -20144.988317 eV Core-core repulsion = 16567.708587 eV Total energy + Delta-G solvation = -3577.279730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.989 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.18029 -39.66858 -39.08890 -37.37525 -36.67747 -34.63617 -33.16042 -32.91904 -30.94253 -29.81355 -28.43824 -26.68340 -24.86752 -23.91080 -22.55807 -21.56682 -19.62773 -18.82412 -18.63090 -18.37267 -17.62241 -17.23696 -17.02712 -15.93289 -15.54991 -15.46505 -15.11932 -15.00343 -14.73790 -14.52077 -14.33239 -14.05045 -13.58717 -13.19446 -13.09821 -12.70934 -12.64079 -12.35583 -12.24788 -12.03348 -12.00233 -11.17053 -10.93208 -10.12937 -9.81667 -9.63382 -9.47069 -8.72176 -8.35867 -7.00816 -0.46601 -0.02629 0.77227 1.30117 1.41261 1.45863 1.58121 1.73984 2.14215 2.36247 2.42146 2.52665 2.58158 3.28816 3.63740 3.76736 3.78334 3.90936 4.05511 4.18054 4.38001 4.47783 4.66034 4.83633 4.86715 5.01598 5.04385 5.23156 5.33801 5.89796 5.98462 6.10407 6.75388 7.00743 7.53385 8.47473 8.70141 Molecular weight = 339.99amu Principal moments of inertia in cm(-1) A = 0.032807 B = 0.003220 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.269450 B = 8692.424017 C = 9523.048919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.034 3.966 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.562 4.562 8 H 0.091 0.909 9 C 0.546 3.454 10 O -0.595 6.595 11 N -0.593 5.593 12 N -0.201 5.201 13 C 0.025 3.975 14 C -0.001 4.001 15 C -0.067 4.067 16 C 0.042 3.958 17 C 0.035 3.965 18 C -0.083 4.083 19 C -0.092 4.092 20 Br 0.004 6.996 21 O -0.316 6.316 22 C 0.203 3.797 23 O -0.311 6.311 24 H 0.279 0.721 25 H 0.380 0.620 26 H 0.152 0.848 27 H 0.179 0.821 28 H 0.151 0.849 29 H 0.108 0.892 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 -20.459 -1.170 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.185 4.185 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.599 4.599 8 H 0.109 0.891 9 C 0.355 3.645 10 O -0.478 6.478 11 N -0.339 5.339 12 N -0.010 5.010 13 C -0.183 4.183 14 C -0.005 4.005 15 C -0.088 4.088 16 C -0.003 4.003 17 C -0.012 4.012 18 C -0.103 4.103 19 C -0.175 4.175 20 Br 0.091 6.909 21 O -0.233 6.233 22 C 0.093 3.907 23 O -0.227 6.227 24 H 0.089 0.911 25 H 0.218 0.782 26 H 0.169 0.831 27 H 0.196 0.804 28 H 0.169 0.831 29 H 0.126 0.874 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.219 -19.326 -1.064 19.482 hybrid contribution 1.407 -0.096 -0.041 1.410 sum 3.625 -19.422 -1.104 19.788 Atomic orbital electron populations 1.70170 1.09710 1.29441 1.33373 1.27000 0.95457 1.05008 0.91001 0.84947 0.78808 0.74613 0.79521 1.18515 1.19759 1.17006 1.20244 0.95629 0.90311 1.53704 0.89113 1.17001 0.87616 0.81962 0.77936 1.90672 1.15126 1.86395 1.55595 1.47750 1.07836 1.02322 1.75996 1.76405 1.25698 0.93170 1.05771 1.24411 0.98948 0.89911 1.05009 1.18133 0.90015 0.91661 1.00737 1.20133 1.01780 0.85617 1.01299 1.19685 0.91111 0.86426 1.03094 1.19930 0.91713 0.85901 1.03607 1.19871 1.01057 0.86685 1.02694 1.22122 0.94875 0.93050 1.07502 1.97111 1.72948 1.24202 1.96615 1.87305 1.37512 1.13723 1.84718 1.26244 0.68799 0.93426 1.02250 1.87366 1.36875 1.13569 1.84923 0.91122 0.78230 0.83063 0.80405 0.83088 0.87421 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.54 11.70 21.86 0.26 -47.28 16 2 C 0.03 1.83 5.50 85.35 0.47 2.30 16 3 Si 1.00 39.28 29.56 68.60 2.03 41.31 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.56 -30.86 9.25 23.30 0.22 -30.64 16 8 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.55 31.57 7.65 84.79 0.65 32.22 16 10 O -0.59 -39.28 15.19 -5.33 -0.08 -39.36 16 11 N -0.59 -27.64 6.26 -180.61 -1.13 -28.77 16 12 N -0.20 -8.63 7.09 -52.31 -0.37 -9.00 16 13 C 0.03 0.81 10.74 87.04 0.94 1.75 16 14 C 0.00 -0.03 5.88 -20.06 -0.12 -0.15 16 15 C -0.07 -1.45 9.81 22.67 0.22 -1.22 16 16 C 0.04 0.93 7.14 22.60 0.16 1.10 16 17 C 0.04 0.85 7.18 22.89 0.16 1.02 16 18 C -0.08 -2.22 9.78 22.33 0.22 -2.00 16 19 C -0.09 -2.93 6.27 22.69 0.14 -2.79 16 20 Br 0.00 0.16 30.05 -20.37 -0.61 -0.45 16 21 O -0.32 -6.48 11.39 -73.74 -0.84 -7.32 16 22 C 0.20 2.52 8.88 113.37 1.01 3.53 16 23 O -0.31 -5.77 11.40 -76.24 -0.87 -6.64 16 24 H 0.28 14.95 8.29 -92.71 -0.77 14.18 16 25 H 0.38 14.58 8.62 -213.31 -1.84 12.74 16 26 H 0.15 3.56 8.03 -2.91 -0.02 3.54 16 27 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.17 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -78.44 297.22 1.83 -76.61 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.62 Total: 15.80 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 4.06 Total: 5.10 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -1.25 Total: -85.05 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -1.79 Total: -53.32 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 35 Polarization: 0.16 SS G_CDS: -0.61 Total: -0.45 kcal Total: -78.44 1.83 -76.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000221883.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.555 kcal (2) G-P(sol) polarization free energy of solvation -78.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds