Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46884 * 2 1 4 4 H 1.08000 * 119.99857 * 359.97438 * 3 2 1 5 5 C 1.37870 * 119.99989 * 180.02562 * 3 2 1 6 6 N 1.31522 * 120.00163 * 179.97438 * 5 3 2 7 7 Si 1.86800 * 120.00006 * 359.97438 * 5 3 2 8 8 H 1.48504 * 109.46954 * 90.00705 * 7 5 3 9 9 H 1.48505 * 109.47196 * 210.00111 * 7 5 3 10 10 H 1.48496 * 109.47392 * 330.00367 * 7 5 3 11 11 O 1.45196 * 109.47324 * 240.00135 * 2 1 3 12 12 C 1.34705 * 117.00279 * 59.99261 * 11 2 1 13 13 O 1.21473 * 120.00102 * 0.02562 * 12 11 2 14 14 C 1.47732 * 119.99951 * 179.72548 * 12 11 2 15 15 C 1.39629 * 120.14724 * 0.02562 * 14 12 11 16 16 C 1.37947 * 119.84219 * 179.76547 * 15 14 12 17 17 C 1.38363 * 120.15308 * 0.48936 * 16 15 14 18 18 N 1.48010 * 119.85033 * 179.76387 * 17 16 15 19 19 O 1.21807 * 120.00138 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00001 * 0.02562 * 18 17 16 21 21 C 1.38370 * 120.30103 * 359.78483 * 17 16 15 22 22 C 1.37949 * 120.15271 * 359.95886 * 21 17 16 23 23 C 1.50700 * 109.47199 * 119.99256 * 2 1 3 24 24 C 1.38238 * 120.00278 * 269.73032 * 23 2 1 25 25 C 1.38234 * 119.99760 * 179.76613 * 24 23 2 26 26 C 1.38236 * 120.00025 * 0.50816 * 25 24 23 27 27 C 1.38230 * 119.99975 * 359.74423 * 26 25 24 28 28 C 1.38236 * 120.00285 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46666 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47200 * 300.00202 * 1 2 3 31 31 H 1.08993 * 109.47122 * 60.00510 * 1 2 3 32 32 H 0.96997 * 120.00282 * 179.97438 * 6 5 3 33 33 H 1.08003 * 120.07584 * 0.02562 * 15 14 12 34 34 H 1.07996 * 119.92155 * 180.23336 * 16 15 14 35 35 H 1.08003 * 119.92443 * 179.97438 * 21 17 16 36 36 H 1.07998 * 120.07755 * 180.02562 * 22 21 17 37 37 H 1.07995 * 119.99586 * 359.97438 * 24 23 2 38 38 H 1.07999 * 119.99714 * 180.22795 * 25 24 23 39 39 H 1.08000 * 120.00113 * 179.72073 * 26 25 24 40 40 H 1.08002 * 120.00404 * 179.97438 * 27 26 25 41 41 H 1.07999 * 119.99959 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 1.3305 2.2417 -0.0004 5 6 3.3878 1.6729 -0.0005 6 7 3.8262 2.9129 -0.0010 7 14 4.6017 0.2531 -0.0005 8 1 4.9231 -0.1234 -1.4007 9 1 5.8453 0.6650 0.6990 10 1 4.0021 -0.9109 0.6999 11 8 2.0141 -0.6844 -1.1855 12 6 1.6521 -0.1727 -2.3778 13 8 0.9515 0.8186 -2.4259 14 6 2.1125 -0.8131 -3.6270 15 6 2.9225 -1.9492 -3.5753 16 6 3.3448 -2.5449 -4.7457 17 6 2.9758 -2.0133 -5.9686 18 7 3.4371 -2.6549 -7.2202 19 8 3.1143 -2.1889 -8.2983 20 8 4.1394 -3.6489 -7.1720 21 6 2.1780 -0.8843 -6.0270 22 6 1.7442 -0.2815 -4.8645 23 6 2.0324 -0.7102 1.2305 24 6 2.2681 0.0017 2.3918 25 6 2.7243 -0.6506 3.5219 26 6 2.9548 -2.0132 3.4877 27 6 2.7240 -2.7243 2.3250 28 6 2.2633 -2.0728 1.1962 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.7798 3.0902 -0.0010 33 1 3.2142 -2.3630 -2.6213 34 1 3.9682 -3.4259 -4.7072 35 1 1.8940 -0.4742 -6.9849 36 1 1.1212 0.5994 -4.9114 37 1 2.0927 1.0670 2.4170 38 1 2.9050 -0.0950 4.4302 39 1 3.3155 -2.5222 4.3694 40 1 2.9045 -3.7888 2.2981 41 1 2.0834 -2.6283 0.2877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000254647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -13.584300 kcal Electronic energy + Delta-G solvation = -29527.053737 eV Core-core repulsion = 25341.426488 eV Total energy + Delta-G solvation = -4185.627250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32054 -40.38853 -39.32910 -38.37667 -36.71067 -35.90367 -33.47168 -32.32554 -31.75020 -31.57351 -30.34308 -28.81367 -27.18114 -25.76861 -23.91954 -23.25846 -22.67046 -21.81743 -20.96282 -19.55566 -19.46661 -18.79164 -17.92534 -17.67614 -16.99791 -16.47204 -15.72405 -15.54899 -15.16363 -15.03556 -14.72069 -14.26136 -14.13397 -14.06973 -13.78288 -13.30099 -12.94104 -12.89106 -12.84357 -12.74215 -12.32048 -11.80858 -11.76362 -11.65574 -11.34264 -11.33880 -11.27952 -11.15121 -10.78431 -10.59806 -10.45055 -10.17450 -9.88389 -9.72062 -9.63194 -9.50266 -9.21704 -8.86351 -8.34475 -7.77145 -6.37136 -4.46958 -0.49774 0.75539 1.01167 1.22083 1.86268 1.94285 2.63202 3.05676 3.19841 3.35231 3.42871 3.57093 4.15934 4.25098 4.26168 4.34765 4.58657 4.68614 4.85660 5.01228 5.07828 5.37615 5.41121 5.43489 5.49789 5.52931 5.60340 5.82212 5.92587 5.99251 5.99787 6.05759 6.16678 6.18305 6.27779 6.40318 6.59320 6.63560 6.86543 6.97158 7.07295 7.09831 7.28300 7.46319 7.49081 7.58482 8.12824 8.45382 8.71002 9.21153 10.71137 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003606 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.175060 B = 7762.991099 C = 8220.962038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.244 3.756 3 C -0.523 4.523 4 H 0.089 0.911 5 C 0.092 3.908 6 N -0.872 5.872 7 Si 0.832 3.168 8 H -0.282 1.282 9 H -0.296 1.296 10 H -0.206 1.206 11 O -0.366 6.366 12 C 0.501 3.499 13 O -0.463 6.463 14 C -0.054 4.054 15 C -0.070 4.070 16 C -0.067 4.067 17 C -0.031 4.031 18 N 0.028 4.972 19 O -0.160 6.160 20 O -0.160 6.160 21 C -0.065 4.065 22 C -0.063 4.063 23 C -0.038 4.038 24 C -0.088 4.088 25 C -0.131 4.131 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.111 4.111 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.268 0.732 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 -10.736 -2.876 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.211 3.789 3 C -0.559 4.559 4 H 0.106 0.894 5 C -0.115 4.115 6 N -0.508 5.508 7 Si 0.659 3.341 8 H -0.209 1.209 9 H -0.224 1.224 10 H -0.128 1.128 11 O -0.284 6.284 12 C 0.342 3.658 13 O -0.349 6.349 14 C -0.055 4.055 15 C -0.089 4.089 16 C -0.086 4.086 17 C -0.114 4.114 18 N 0.548 4.452 19 O -0.376 6.376 20 O -0.376 6.376 21 C -0.084 4.084 22 C -0.082 4.082 23 C -0.038 4.038 24 C -0.106 4.106 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.129 4.129 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.157 0.843 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.204 -9.990 -2.208 10.721 hybrid contribution 1.189 -0.580 -0.395 1.380 sum -2.016 -10.570 -2.604 11.071 Atomic orbital electron populations 1.22217 0.95062 1.00128 1.03800 1.19101 0.91550 0.91117 0.77158 1.21069 0.93001 0.89345 1.52476 0.89350 1.25002 0.98390 0.95536 0.92528 1.69904 1.15104 1.19096 1.46666 0.87674 0.80890 0.86118 0.79385 1.20887 1.22372 1.12849 1.86410 1.69563 1.57624 1.14842 1.20280 0.79054 0.82590 0.83872 1.90786 1.33695 1.22665 1.87764 1.20213 0.96751 0.95265 0.93319 1.21613 0.94470 0.93883 0.98911 1.21034 0.97922 1.00250 0.89368 1.21341 1.06423 0.99319 0.84274 1.43648 0.98755 1.00047 1.02753 1.94536 1.60161 1.66431 1.16448 1.94538 1.34098 1.14855 1.94118 1.20992 0.94105 0.92258 1.01007 1.21382 0.97972 0.99691 0.89136 1.19774 0.96624 0.92637 0.94805 1.21264 0.96820 1.01028 0.91518 1.21127 1.00928 0.94478 0.98363 1.20986 1.01946 0.94624 0.97771 1.20967 1.01662 0.99138 0.93577 1.21019 0.99482 0.94563 0.97828 0.94332 0.91660 0.90365 0.92192 0.82185 0.82402 0.82248 0.81921 0.84264 0.86634 0.87109 0.87060 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.30 37.16 0.31 -2.62 16 2 C 0.24 5.11 0.52 -92.92 -0.05 5.06 16 3 C -0.52 -13.16 5.70 -34.44 -0.20 -13.36 16 4 H 0.09 2.50 7.99 -52.49 -0.42 2.08 16 5 C 0.09 2.44 5.11 -17.82 -0.09 2.35 16 6 N -0.87 -24.92 13.96 55.43 0.77 -24.15 16 7 Si 0.83 19.62 24.62 -169.99 -4.19 15.43 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 10 H -0.21 -4.40 3.31 56.52 0.19 -4.22 16 11 O -0.37 -7.25 5.86 -40.51 -0.24 -7.49 16 12 C 0.50 9.61 7.20 34.61 0.25 9.86 16 13 O -0.46 -9.98 12.95 -19.25 -0.25 -10.23 16 14 C -0.05 -0.82 5.87 -104.98 -0.62 -1.43 16 15 C -0.07 -0.91 9.62 -39.17 -0.38 -1.29 16 16 C -0.07 -0.78 9.54 -39.64 -0.38 -1.16 16 17 C -0.03 -0.38 6.86 -79.86 -0.55 -0.93 16 18 N 0.03 0.39 4.45 34.01 0.15 0.54 16 19 O -0.16 -2.24 18.43 -29.46 -0.54 -2.79 16 20 O -0.16 -2.26 18.43 -29.46 -0.54 -2.81 16 21 C -0.06 -0.74 9.54 -39.64 -0.38 -1.12 16 22 C -0.06 -0.81 9.60 -39.17 -0.38 -1.19 16 23 C -0.04 -0.74 2.26 -104.62 -0.24 -0.98 16 24 C -0.09 -1.70 7.73 -39.58 -0.31 -2.01 16 25 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 26 C -0.14 -2.04 10.05 -39.59 -0.40 -2.43 16 27 C -0.14 -2.07 10.05 -39.59 -0.40 -2.46 16 28 C -0.11 -1.90 7.67 -39.58 -0.30 -2.21 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.56 5.88 -51.93 -0.31 1.25 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.16 1.95 7.61 -52.48 -0.40 1.55 16 34 H 0.16 1.52 7.60 -52.49 -0.40 1.12 16 35 H 0.16 1.47 7.60 -52.48 -0.40 1.07 16 36 H 0.16 1.94 7.65 -52.49 -0.40 1.54 16 37 H 0.14 2.89 6.98 -52.49 -0.37 2.52 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.84 7.48 -52.49 -0.39 1.45 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -29.88 349.43 -8.60 -38.49 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.55 Total: 6.20 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -4.49 Total: -18.46 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.93 Total: -23.61 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.57 Total: -23.32 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.19 Total: 15.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.88 -8.60 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000254647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.903 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds