Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46884 * 2 1 4 4 H 1.08000 * 119.99857 * 359.97438 * 3 2 1 5 5 C 1.37870 * 119.99989 * 180.02562 * 3 2 1 6 6 N 1.31522 * 120.00163 * 179.97438 * 5 3 2 7 7 Si 1.86800 * 120.00006 * 359.97438 * 5 3 2 8 8 H 1.48504 * 109.46954 * 90.00705 * 7 5 3 9 9 H 1.48505 * 109.47196 * 210.00111 * 7 5 3 10 10 H 1.48496 * 109.47392 * 330.00367 * 7 5 3 11 11 O 1.45196 * 109.47324 * 240.00135 * 2 1 3 12 12 C 1.34705 * 117.00279 * 59.99261 * 11 2 1 13 13 O 1.21473 * 120.00102 * 0.02562 * 12 11 2 14 14 C 1.47732 * 119.99951 * 179.72548 * 12 11 2 15 15 C 1.39629 * 120.14724 * 0.02562 * 14 12 11 16 16 C 1.37947 * 119.84219 * 179.76547 * 15 14 12 17 17 C 1.38363 * 120.15308 * 0.48936 * 16 15 14 18 18 N 1.48010 * 119.85033 * 179.76387 * 17 16 15 19 19 O 1.21807 * 120.00138 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00001 * 0.02562 * 18 17 16 21 21 C 1.38370 * 120.30103 * 359.78483 * 17 16 15 22 22 C 1.37949 * 120.15271 * 359.95886 * 21 17 16 23 23 C 1.50700 * 109.47199 * 119.99256 * 2 1 3 24 24 C 1.38238 * 120.00278 * 269.73032 * 23 2 1 25 25 C 1.38234 * 119.99760 * 179.76613 * 24 23 2 26 26 C 1.38236 * 120.00025 * 0.50816 * 25 24 23 27 27 C 1.38230 * 119.99975 * 359.74423 * 26 25 24 28 28 C 1.38236 * 120.00285 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46666 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47200 * 300.00202 * 1 2 3 31 31 H 1.08993 * 109.47122 * 60.00510 * 1 2 3 32 32 H 0.96997 * 120.00282 * 179.97438 * 6 5 3 33 33 H 1.08003 * 120.07584 * 0.02562 * 15 14 12 34 34 H 1.07996 * 119.92155 * 180.23336 * 16 15 14 35 35 H 1.08003 * 119.92443 * 179.97438 * 21 17 16 36 36 H 1.07998 * 120.07755 * 180.02562 * 22 21 17 37 37 H 1.07995 * 119.99586 * 359.97438 * 24 23 2 38 38 H 1.07999 * 119.99714 * 180.22795 * 25 24 23 39 39 H 1.08000 * 120.00113 * 179.72073 * 26 25 24 40 40 H 1.08002 * 120.00404 * 179.97438 * 27 26 25 41 41 H 1.07999 * 119.99959 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 1.3305 2.2417 -0.0004 5 6 3.3878 1.6729 -0.0005 6 7 3.8262 2.9129 -0.0010 7 14 4.6017 0.2531 -0.0005 8 1 4.9231 -0.1234 -1.4007 9 1 5.8453 0.6650 0.6990 10 1 4.0021 -0.9109 0.6999 11 8 2.0141 -0.6844 -1.1855 12 6 1.6521 -0.1727 -2.3778 13 8 0.9515 0.8186 -2.4259 14 6 2.1125 -0.8131 -3.6270 15 6 2.9225 -1.9492 -3.5753 16 6 3.3448 -2.5449 -4.7457 17 6 2.9758 -2.0133 -5.9686 18 7 3.4371 -2.6549 -7.2202 19 8 3.1143 -2.1889 -8.2983 20 8 4.1394 -3.6489 -7.1720 21 6 2.1780 -0.8843 -6.0270 22 6 1.7442 -0.2815 -4.8645 23 6 2.0324 -0.7102 1.2305 24 6 2.2681 0.0017 2.3918 25 6 2.7243 -0.6506 3.5219 26 6 2.9548 -2.0132 3.4877 27 6 2.7240 -2.7243 2.3250 28 6 2.2633 -2.0728 1.1962 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.7798 3.0902 -0.0010 33 1 3.2142 -2.3630 -2.6213 34 1 3.9682 -3.4259 -4.7072 35 1 1.8940 -0.4742 -6.9849 36 1 1.1212 0.5994 -4.9114 37 1 2.0927 1.0670 2.4170 38 1 2.9050 -0.0950 4.4302 39 1 3.3155 -2.5222 4.3694 40 1 2.9045 -3.7888 2.2981 41 1 2.0834 -2.6283 0.2877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000254647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = -28.209805 kcal Electronic energy + Delta-G solvation = -29527.687947 eV Core-core repulsion = 25341.426488 eV Total energy + Delta-G solvation = -4186.261459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.36828 -41.83196 -40.54940 -39.68596 -37.77477 -37.46920 -35.18906 -33.79263 -33.13888 -32.60683 -31.64127 -30.23098 -28.32786 -27.64174 -25.25999 -24.27553 -23.95980 -23.14123 -22.23519 -21.07584 -20.53842 -19.87163 -19.50067 -18.71712 -18.57877 -17.86210 -17.32602 -16.96191 -16.36659 -16.31706 -16.09477 -15.65938 -15.47330 -15.12047 -15.00623 -14.86403 -14.39226 -14.28357 -14.15574 -14.10411 -13.91457 -13.34996 -12.97292 -12.88574 -12.81077 -12.62699 -12.43787 -12.38303 -12.35665 -12.20905 -11.86867 -11.74373 -11.55283 -11.13896 -11.04245 -10.82740 -10.81559 -10.58170 -9.65307 -9.19409 -8.41902 -6.53557 -1.57924 -0.20432 -0.09866 0.18612 0.54239 0.62798 1.28169 1.30515 1.43839 1.50662 1.77223 2.29006 2.33472 2.96639 3.03438 3.19538 3.33207 3.46364 3.64542 3.72385 4.10100 4.15749 4.25457 4.29061 4.37208 4.46906 4.49891 4.50466 4.54996 4.62178 4.79866 4.81935 4.87341 4.96829 5.03018 5.21586 5.25702 5.26525 5.33274 5.38208 5.61622 5.73644 5.77458 5.95544 6.21244 6.26695 6.40338 6.56645 6.89702 7.18186 8.70518 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003606 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.175060 B = 7762.991099 C = 8220.962038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.247 3.753 3 C -0.511 4.511 4 H 0.037 0.963 5 C 0.046 3.954 6 N -0.930 5.930 7 Si 0.876 3.124 8 H -0.281 1.281 9 H -0.314 1.314 10 H -0.164 1.164 11 O -0.358 6.358 12 C 0.495 3.505 13 O -0.500 6.500 14 C -0.077 4.077 15 C -0.065 4.065 16 C -0.055 4.055 17 C -0.033 4.033 18 N 0.028 4.972 19 O -0.168 6.168 20 O -0.163 6.163 21 C -0.053 4.053 22 C -0.061 4.061 23 C -0.063 4.063 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.117 4.117 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.264 0.736 33 H 0.173 0.827 34 H 0.185 0.815 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -15.267 -2.724 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.213 3.787 3 C -0.548 4.548 4 H 0.055 0.945 5 C -0.155 4.155 6 N -0.568 5.568 7 Si 0.702 3.298 8 H -0.207 1.207 9 H -0.242 1.242 10 H -0.085 1.085 11 O -0.276 6.276 12 C 0.339 3.661 13 O -0.388 6.388 14 C -0.078 4.078 15 C -0.084 4.084 16 C -0.073 4.073 17 C -0.115 4.115 18 N 0.546 4.454 19 O -0.383 6.383 20 O -0.379 6.379 21 C -0.071 4.071 22 C -0.079 4.079 23 C -0.063 4.063 24 C -0.132 4.132 25 C -0.152 4.152 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.135 4.135 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.190 0.810 34 H 0.202 0.798 35 H 0.200 0.800 36 H 0.183 0.817 37 H 0.123 0.877 38 H 0.152 0.848 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.407 -14.548 -2.073 14.891 hybrid contribution 0.820 0.817 -0.452 1.243 sum -1.587 -13.731 -2.525 14.051 Atomic orbital electron populations 1.22144 0.94154 1.01548 1.02821 1.18942 0.92446 0.89066 0.78278 1.21091 0.91957 0.90811 1.50973 0.94469 1.25668 1.00093 0.97356 0.92419 1.70055 1.15019 1.21461 1.50308 0.87040 0.78062 0.85142 0.79599 1.20708 1.24233 1.08550 1.86350 1.69496 1.56856 1.14922 1.21020 0.78208 0.82156 0.84750 1.90781 1.35432 1.24413 1.88198 1.20029 0.99152 0.96843 0.91787 1.21708 0.93689 0.92946 1.00031 1.21241 0.97253 1.00523 0.88310 1.21520 1.06414 0.99471 0.84137 1.43772 0.98626 0.99985 1.02968 1.94543 1.60373 1.66519 1.16838 1.94535 1.34172 1.15010 1.94195 1.21149 0.93058 0.91605 1.01321 1.21420 0.97892 0.99784 0.88853 1.19620 0.98994 0.94030 0.93673 1.21115 0.99090 0.99793 0.93188 1.21384 1.00124 0.95758 0.97964 1.21456 0.99994 0.93712 0.99204 1.21435 0.99444 1.01065 0.92439 1.21237 0.99417 0.93266 0.99599 0.91524 0.91996 0.92065 0.92663 0.80973 0.79821 0.79978 0.81721 0.87709 0.84782 0.83260 0.83060 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 8.30 71.98 0.60 -5.20 16 2 C 0.25 10.47 0.52 -12.28 -0.01 10.47 16 3 C -0.51 -27.37 5.70 25.60 0.15 -27.22 16 4 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 5 C 0.05 2.53 5.11 84.65 0.43 2.96 16 6 N -0.93 -56.71 13.96 21.45 0.30 -56.41 16 7 Si 0.88 40.72 24.62 68.60 1.69 42.41 16 8 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 9 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 10 H -0.16 -6.55 3.31 99.48 0.33 -6.22 16 11 O -0.36 -13.95 5.86 -56.15 -0.33 -14.28 16 12 C 0.50 19.14 7.20 70.33 0.51 19.64 16 13 O -0.50 -22.57 12.95 19.92 0.26 -22.31 16 14 C -0.08 -2.24 5.87 -20.10 -0.12 -2.35 16 15 C -0.07 -1.52 9.62 22.54 0.22 -1.30 16 16 C -0.05 -1.09 9.54 22.23 0.21 -0.87 16 17 C -0.03 -0.72 6.86 36.44 0.25 -0.47 16 18 N 0.03 0.69 4.45 -46.32 -0.21 0.49 16 19 O -0.17 -4.33 18.43 18.88 0.35 -3.98 16 20 O -0.16 -4.15 18.43 18.88 0.35 -3.80 16 21 C -0.05 -1.08 9.54 22.23 0.21 -0.87 16 22 C -0.06 -1.49 9.60 22.54 0.22 -1.28 16 23 C -0.06 -2.37 2.26 -19.86 -0.04 -2.41 16 24 C -0.11 -4.36 7.73 22.27 0.17 -4.19 16 25 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 26 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 27 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 28 C -0.12 -3.57 7.67 22.27 0.17 -3.40 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.56 5.88 -2.39 -0.01 2.55 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.17 3.58 7.61 -2.91 -0.02 3.56 16 34 H 0.18 2.72 7.60 -2.91 -0.02 2.69 16 35 H 0.18 2.88 7.60 -2.91 -0.02 2.86 16 36 H 0.17 3.93 7.65 -2.91 -0.02 3.91 16 37 H 0.10 4.66 6.98 -2.91 -0.02 4.64 16 38 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.13 3.59 7.48 -2.91 -0.02 3.57 16 Total: -1.00 -70.01 349.43 6.74 -63.27 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.70 Total: 20.83 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.63 Total: -26.22 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.09 Total: -55.92 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: 0.63 Total: -44.37 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.69 Total: 42.41 kcal Total: -70.01 6.74 -63.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000254647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.064 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds