Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46802 * 2 1 4 4 H 1.07997 * 120.00231 * 359.97438 * 3 2 1 5 5 C 1.37876 * 119.99820 * 180.02562 * 3 2 1 6 6 N 1.31518 * 120.00275 * 359.97438 * 5 3 2 7 7 Si 1.86801 * 120.00214 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.46914 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47148 * 119.99889 * 7 5 3 10 10 H 1.48499 * 109.47060 * 240.00344 * 7 5 3 11 11 O 1.45199 * 109.47207 * 119.99456 * 2 1 3 12 12 C 1.34705 * 117.00434 * 300.00495 * 11 2 1 13 13 O 1.21470 * 119.99965 * 359.97438 * 12 11 2 14 14 C 1.47726 * 120.00320 * 179.97438 * 12 11 2 15 15 C 1.39631 * 120.15220 * 179.97438 * 14 12 11 16 16 C 1.37942 * 119.84621 * 180.02562 * 15 14 12 17 17 C 1.38367 * 120.15190 * 0.02562 * 16 15 14 18 18 N 1.48020 * 119.84785 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99894 * 359.97438 * 18 17 16 20 20 O 1.21799 * 119.99903 * 179.72403 * 18 17 16 21 21 C 1.38365 * 120.30270 * 0.24919 * 17 16 15 22 22 C 1.37945 * 120.15113 * 359.49762 * 21 17 16 23 23 C 1.50696 * 109.47094 * 240.00170 * 2 1 3 24 24 C 1.38227 * 120.00285 * 89.72486 * 23 2 1 25 25 C 1.38236 * 120.00018 * 179.80825 * 24 23 2 26 26 C 1.38237 * 119.99950 * 0.40140 * 25 24 23 27 27 C 1.38233 * 119.99936 * 359.85189 * 26 25 24 28 28 C 1.38230 * 119.99977 * 359.95497 * 27 26 25 29 29 H 1.08997 * 109.47249 * 299.99771 * 1 2 3 30 30 H 1.09000 * 109.47143 * 60.00184 * 1 2 3 31 31 H 1.09005 * 109.46914 * 180.02562 * 1 2 3 32 32 H 0.96991 * 120.00368 * 179.97438 * 6 5 3 33 33 H 1.08000 * 120.07510 * 359.97438 * 15 14 12 34 34 H 1.07998 * 119.92143 * 179.97438 * 16 15 14 35 35 H 1.07999 * 119.92169 * 179.74829 * 21 17 16 36 36 H 1.07997 * 120.07773 * 180.23196 * 22 21 17 37 37 H 1.07995 * 120.00172 * 359.97438 * 24 23 2 38 38 H 1.08003 * 119.99927 * 180.22736 * 25 24 23 39 39 H 1.08003 * 120.00013 * 179.83693 * 26 25 24 40 40 H 1.07998 * 119.99895 * 179.97438 * 27 26 25 41 41 H 1.08000 * 120.00134 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 1.3305 2.2417 -0.0004 5 6 3.3878 1.6728 -0.0005 6 7 4.2425 0.6733 -0.0005 7 14 4.0105 3.4340 -0.0013 8 1 2.8555 4.3674 -0.0018 9 1 4.8359 3.6677 1.2109 10 1 4.8350 3.6670 -1.2141 11 8 2.0140 -0.6844 1.1856 12 6 1.6521 -0.1725 2.3779 13 8 0.9516 0.8187 2.4259 14 6 2.1069 -0.8166 3.6271 15 6 1.7340 -0.2884 4.8646 16 6 2.1628 -0.8946 6.0272 17 6 2.9610 -2.0233 5.9688 18 7 3.4178 -2.6681 7.2205 19 8 3.0912 -2.2047 8.2986 20 8 4.1163 -3.6647 7.1724 21 6 3.3390 -2.5487 4.7459 22 6 2.9131 -1.9556 3.5756 23 6 2.0323 -0.7104 -1.2305 24 6 2.2573 -0.0004 -2.3950 25 6 2.7219 -0.6514 -3.5225 26 6 2.9535 -2.0138 -3.4879 27 6 2.7236 -2.7246 -2.3248 28 6 2.2628 -2.0730 -1.1962 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 5.1961 0.8505 -0.0013 33 1 1.1120 0.5933 4.9115 34 1 1.8754 -0.4868 6.9850 35 1 3.9655 -3.4276 4.7076 36 1 3.2057 -2.3689 2.6217 37 1 2.0727 1.0632 -2.4232 38 1 2.9012 -0.0961 -4.4313 39 1 3.3140 -2.5229 -4.3696 40 1 2.9042 -3.7891 -2.2979 41 1 2.0828 -2.6284 -0.2876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000254652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -38.573182 kcal Electronic energy + Delta-G solvation = -29330.579559 eV Core-core repulsion = 25143.868710 eV Total energy + Delta-G solvation = -4186.710849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.33934 -41.52848 -40.29475 -39.44029 -37.75076 -37.19919 -35.03416 -33.52796 -32.89868 -32.52748 -31.45389 -30.03232 -28.24044 -27.29445 -25.15063 -24.20390 -23.90123 -23.04056 -22.07683 -21.03146 -20.48899 -19.83259 -19.23676 -18.69331 -18.32879 -17.66217 -16.93683 -16.79939 -16.31113 -16.19656 -16.01886 -15.63076 -15.31851 -14.96077 -14.92312 -14.65057 -14.20363 -14.00548 -13.96216 -13.89936 -13.46683 -13.03567 -12.90552 -12.85832 -12.79069 -12.59680 -12.54532 -12.37902 -12.33796 -12.18629 -11.99954 -11.70208 -11.42059 -10.97646 -10.79434 -10.67862 -10.61064 -10.51880 -9.48342 -9.23141 -8.15306 -6.33052 -1.51524 -0.13769 -0.03297 0.22516 0.81149 0.84025 1.29488 1.36899 1.44623 1.53760 2.00589 2.34553 2.45071 3.12304 3.24649 3.26343 3.38612 3.62261 3.72986 3.88634 4.21552 4.28166 4.36194 4.39382 4.51982 4.55590 4.56310 4.61864 4.62999 4.73665 4.92535 4.97623 5.00369 5.02904 5.17091 5.31161 5.32303 5.44534 5.50307 5.65525 5.81356 5.86529 5.89282 6.11191 6.36261 6.43508 6.45687 6.69509 7.16532 7.38315 8.83227 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.003569 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.650319 B = 7843.062567 C = 8771.925629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.268 3.732 3 C -0.537 4.537 4 H 0.048 0.952 5 C 0.052 3.948 6 N -0.864 5.864 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.287 1.287 10 H -0.275 1.275 11 O -0.338 6.338 12 C 0.495 3.505 13 O -0.515 6.515 14 C -0.071 4.071 15 C -0.062 4.062 16 C -0.053 4.053 17 C -0.035 4.035 18 N 0.029 4.971 19 O -0.166 6.166 20 O -0.169 6.169 21 C -0.056 4.056 22 C -0.060 4.060 23 C -0.021 4.021 24 C -0.100 4.100 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.125 4.125 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.261 0.739 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.164 0.836 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -7.345 3.105 8.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.234 3.766 3 C -0.574 4.574 4 H 0.067 0.933 5 C -0.154 4.154 6 N -0.499 5.499 7 Si 0.753 3.247 8 H -0.198 1.198 9 H -0.213 1.213 10 H -0.200 1.200 11 O -0.254 6.254 12 C 0.339 3.661 13 O -0.406 6.406 14 C -0.072 4.072 15 C -0.081 4.081 16 C -0.072 4.072 17 C -0.118 4.118 18 N 0.547 4.453 19 O -0.382 6.382 20 O -0.384 6.384 21 C -0.074 4.074 22 C -0.078 4.078 23 C -0.021 4.021 24 C -0.118 4.118 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.149 4.149 28 C -0.144 4.144 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.184 0.816 34 H 0.200 0.800 35 H 0.196 0.804 36 H 0.182 0.818 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.743 -6.804 2.443 7.732 hybrid contribution 0.668 1.330 0.353 1.530 sum -2.075 -5.473 2.795 6.487 Atomic orbital electron populations 1.22287 0.95802 1.00732 1.02715 1.18618 0.89698 0.89917 0.78339 1.21291 0.91670 0.91393 1.53085 0.93334 1.25389 0.97120 0.99108 0.93768 1.70093 1.01992 1.30984 1.46834 0.85990 0.78404 0.82636 0.77656 1.19830 1.21306 1.20037 1.86463 1.68886 1.55633 1.14374 1.20973 0.77792 0.82213 0.85127 1.90703 1.36302 1.25142 1.88478 1.20082 0.98547 0.96419 0.92158 1.21406 0.98005 0.99904 0.88764 1.21134 0.93220 0.91536 1.01331 1.21487 1.06687 0.99644 0.83944 1.43782 0.98538 0.99978 1.02990 1.94526 1.59973 1.66736 1.16915 1.94536 1.34687 1.14924 1.94224 1.21189 0.97336 1.00468 0.88453 1.21611 0.93602 0.93056 0.99560 1.19538 0.96243 0.92947 0.93391 1.20937 0.98703 0.99220 0.92957 1.21279 1.00782 0.95517 0.98135 1.21258 1.01575 0.94076 0.98769 1.21273 1.00275 1.00436 0.92956 1.21052 1.00701 0.94194 0.98406 0.91874 0.91944 0.93022 0.93001 0.81615 0.80004 0.80369 0.81824 0.87736 0.85267 0.84164 0.84368 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.44 8.30 71.98 0.60 -5.84 16 2 C 0.27 12.08 0.55 -12.29 -0.01 12.07 16 3 C -0.54 -27.10 5.10 25.60 0.13 -26.97 16 4 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 5 C 0.05 2.61 4.79 84.65 0.41 3.02 16 6 N -0.86 -44.36 11.85 21.45 0.25 -44.10 16 7 Si 0.93 41.63 29.54 68.60 2.03 43.66 16 8 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 9 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 O -0.34 -14.66 7.53 -56.14 -0.42 -15.08 16 12 C 0.50 20.11 7.20 70.33 0.51 20.62 16 13 O -0.52 -23.19 12.95 19.93 0.26 -22.93 16 14 C -0.07 -2.19 5.87 -20.10 -0.12 -2.31 16 15 C -0.06 -1.58 9.60 22.54 0.22 -1.36 16 16 C -0.05 -1.15 9.54 22.23 0.21 -0.94 16 17 C -0.03 -0.83 6.86 36.44 0.25 -0.58 16 18 N 0.03 0.76 4.45 -46.31 -0.21 0.56 16 19 O -0.17 -4.43 18.43 18.88 0.35 -4.09 16 20 O -0.17 -4.59 18.43 18.89 0.35 -4.24 16 21 C -0.06 -1.25 9.54 22.23 0.21 -1.04 16 22 C -0.06 -1.58 9.62 22.54 0.22 -1.36 16 23 C -0.02 -0.88 3.71 -19.87 -0.07 -0.96 16 24 C -0.10 -4.16 8.67 22.27 0.19 -3.97 16 25 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 26 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 27 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 28 C -0.13 -4.73 9.35 22.27 0.21 -4.52 16 29 H 0.06 2.69 5.88 -2.39 -0.01 2.68 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.26 13.08 8.31 -92.72 -0.77 12.31 16 33 H 0.17 3.99 7.65 -2.91 -0.02 3.96 16 34 H 0.18 3.00 7.60 -2.91 -0.02 2.97 16 35 H 0.18 3.21 7.60 -2.91 -0.02 3.19 16 36 H 0.16 4.33 7.61 -2.91 -0.02 4.31 16 37 H 0.10 4.63 7.01 -2.91 -0.02 4.61 16 38 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.11 4.10 7.48 -2.91 -0.02 4.08 16 Total: -1.00 -60.14 360.66 7.30 -52.84 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.07 Total: 20.19 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.62 Total: -26.80 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.05 Total: -43.55 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: 0.53 Total: -46.35 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -60.14 7.30 -52.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000254652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.269 kcal (2) G-P(sol) polarization free energy of solvation -60.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds