Wall clock time and date at job start Tue Mar 31 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38302 * 119.92013 * 2 1 4 4 C 1.38079 * 120.07995 * 180.02562 * 3 2 1 5 5 C 1.38972 * 119.92345 * 359.97438 * 4 3 2 6 6 S 1.76192 * 120.08501 * 180.02562 * 5 4 3 7 7 C 1.81404 * 103.00328 * 173.52269 * 6 5 4 8 8 H 1.09003 * 109.46798 * 53.10965 * 7 6 5 9 9 C 1.53001 * 109.47289 * 173.11064 * 7 6 5 10 10 C 1.50702 * 109.46661 * 293.11273 * 7 6 5 11 11 O 1.21272 * 120.00465 * 339.99493 * 10 7 6 12 12 N 1.34782 * 119.99592 * 159.99818 * 10 7 6 13 13 C 1.39235 * 119.99822 * 175.13103 * 12 10 7 14 14 C 1.39481 * 119.82972 * 147.19454 * 13 12 10 15 15 C 1.36383 * 120.16453 * 179.76161 * 14 13 12 16 16 C 1.40861 * 119.82934 * 0.51281 * 15 14 13 17 17 C 1.41160 * 120.16650 * 179.71804 * 16 15 14 18 18 H 1.07997 * 119.99769 * 205.75957 * 17 16 15 19 19 C 1.39904 * 119.99318 * 25.75562 * 17 16 15 20 20 N 1.30868 * 120.00353 * 15.71906 * 19 17 16 21 21 Si 1.86806 * 119.99403 * 195.72104 * 19 17 16 22 22 H 1.48498 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47153 * 120.00159 * 21 19 17 24 24 H 1.48497 * 109.46902 * 240.00168 * 21 19 17 25 25 C 1.40871 * 119.67342 * 359.74549 * 16 15 14 26 26 C 1.36376 * 119.82802 * 359.97438 * 25 16 15 27 27 C 1.38977 * 119.83746 * 0.27588 * 5 4 3 28 28 C 1.38092 * 119.91839 * 359.44816 * 27 5 4 29 29 H 1.09003 * 109.46882 * 90.00243 * 1 2 3 30 30 H 1.08994 * 109.47037 * 209.99846 * 1 2 3 31 31 H 1.08993 * 109.47247 * 330.00501 * 1 2 3 32 32 H 1.08006 * 119.96086 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.04091 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.46839 * 55.49811 * 9 7 6 35 35 H 1.09002 * 109.47304 * 295.50172 * 9 7 6 36 36 H 1.08992 * 109.47115 * 175.49870 * 9 7 6 37 37 H 0.97006 * 120.00066 * 355.13846 * 12 10 7 38 38 H 1.07999 * 119.91851 * 0.02562 * 14 13 12 39 39 H 1.08006 * 120.08216 * 180.25057 * 15 14 13 40 40 H 0.97000 * 120.00058 * 179.97438 * 20 19 17 41 41 H 1.08004 * 120.08804 * 179.97438 * 25 16 15 42 42 H 1.08005 * 119.91480 * 179.97438 * 26 25 16 43 43 H 1.07999 * 120.04202 * 179.72749 * 27 5 4 44 44 H 1.07999 * 119.96073 * 180.27626 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5776 1.2025 -0.0005 5 6 4.2743 0.0000 -0.0005 6 16 6.0362 0.0000 -0.0005 7 6 6.4443 -1.7563 0.1989 8 1 5.9249 -2.3386 -0.5622 9 6 7.9544 -1.9495 0.0466 10 6 6.0138 -2.2198 1.5667 11 8 5.8275 -1.4105 2.4504 12 7 5.8360 -3.5339 1.8079 13 6 5.5375 -3.9712 3.0956 14 6 4.7197 -5.0863 3.2775 15 6 4.4268 -5.5234 4.5358 16 6 4.9437 -4.8392 5.6533 17 6 4.6403 -5.2819 6.9588 18 1 4.6588 -4.5847 7.7834 19 6 4.3155 -6.6239 7.1844 20 7 4.5848 -7.5244 6.2738 21 14 3.4974 -7.1303 8.7857 22 1 3.3026 -5.9330 9.6422 23 1 2.1801 -7.7506 8.4940 24 1 4.3599 -8.1099 9.4939 25 6 5.7646 -3.7105 5.4615 26 6 6.0534 -3.2887 4.1972 27 6 3.5777 -1.2026 -0.0058 28 6 2.1968 -1.1988 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6549 2.1329 -0.0004 33 1 4.1157 2.1390 -0.0010 34 1 8.4762 -1.3060 0.7550 35 1 8.2535 -1.6895 -0.9688 36 1 8.2094 -2.9904 0.2453 37 1 5.9162 -4.1750 1.0843 38 1 4.3208 -5.6074 2.4198 39 1 3.7967 -6.3895 4.6750 40 1 4.3599 -8.4549 6.4304 41 1 6.1642 -3.1806 6.3136 42 1 6.6822 -2.4232 4.0486 43 1 4.1157 -2.1390 -0.0103 44 1 1.6549 -2.1329 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000555019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:48 Heat of formation + Delta-G solvation = 5.800943 kcal Electronic energy + Delta-G solvation = -26149.016839 eV Core-core repulsion = 22542.816163 eV Total energy + Delta-G solvation = -3606.200677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.85907 -39.13302 -37.33836 -34.50492 -33.57981 -32.88812 -32.64079 -30.99144 -29.60388 -28.89889 -27.18863 -25.58043 -24.29986 -22.64389 -21.74817 -21.54119 -20.79960 -19.66340 -17.71780 -17.41686 -17.03554 -16.77245 -15.73055 -15.47681 -15.22562 -15.00436 -14.78080 -14.04457 -14.01619 -13.91886 -13.75212 -13.51045 -13.16126 -12.75131 -12.48983 -12.44095 -12.39707 -12.25226 -12.18169 -12.01847 -11.79444 -11.47428 -11.29005 -11.16078 -11.05665 -10.95047 -10.58328 -10.31163 -10.12488 -9.76319 -9.49808 -9.47029 -9.21129 -9.00586 -8.76579 -7.58347 -7.31116 -7.01927 -6.79003 -4.33071 1.13449 1.34976 1.41633 2.23983 2.47873 2.94315 3.04988 3.07133 3.11748 3.32982 3.56722 3.65126 3.91003 4.57632 4.61646 4.69921 4.75030 4.82279 4.90503 4.96007 5.20761 5.31492 5.37231 5.45567 5.46970 5.59386 5.61350 5.67271 5.84004 5.90825 5.96681 6.14552 6.23838 6.26686 6.38312 6.53429 6.71066 6.86276 6.87786 7.00704 7.14279 7.24370 7.56161 7.65810 7.83233 8.00374 8.21484 8.24495 8.55272 8.66843 8.85528 8.95392 10.14742 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.002910 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.442105 B = 9619.503300 C =11051.623572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.103 4.103 4 C -0.098 4.098 5 C -0.083 4.083 6 S -0.062 6.062 7 C -0.109 4.109 8 H 0.108 0.892 9 C -0.128 4.128 10 C 0.495 3.505 11 O -0.503 6.503 12 N -0.644 5.644 13 C -0.007 4.007 14 C -0.113 4.113 15 C -0.152 4.152 16 C 0.107 3.893 17 C -0.457 4.457 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.795 5.795 21 Si 0.909 3.091 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.215 4.215 26 C -0.076 4.076 27 C -0.120 4.120 28 C -0.097 4.097 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.394 0.606 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.280 0.720 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 8.953 -15.759 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.123 4.123 4 C -0.122 4.122 5 C -0.196 4.196 6 S 0.184 5.816 7 C -0.241 4.241 8 H 0.126 0.874 9 C -0.187 4.187 10 C 0.277 3.723 11 O -0.377 6.377 12 N -0.288 5.288 13 C -0.099 4.099 14 C -0.133 4.133 15 C -0.172 4.172 16 C 0.104 3.896 17 C -0.486 4.486 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.421 5.421 21 Si 0.733 3.267 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.235 4.235 26 C -0.096 4.096 27 C -0.144 4.144 28 C -0.116 4.116 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.011 10.187 -15.272 18.386 hybrid contribution -1.165 -1.889 0.481 2.271 sum -2.176 8.298 -14.791 17.099 Atomic orbital electron populations 1.20771 0.91095 1.02937 1.02085 1.19921 0.96148 0.93085 1.00622 1.20912 0.93458 0.97596 1.00354 1.20682 0.93991 0.96216 1.01309 1.21714 0.97046 0.96491 1.04301 1.85127 0.98972 1.07972 1.89576 1.23811 1.02886 0.97982 0.99470 0.87390 1.21525 0.89782 1.03680 1.03675 1.20169 0.79424 0.83223 0.89493 1.90763 1.48861 1.52754 1.45365 1.42912 1.69219 1.06394 1.10249 1.17131 1.08848 1.01621 0.82280 1.20203 0.98967 0.96977 0.97162 1.20910 1.03222 1.02356 0.90670 1.17674 0.88285 0.90171 0.93479 1.19611 1.40468 0.94063 0.94485 0.90317 1.25920 0.93365 0.96500 0.98508 1.69832 1.35090 1.02660 1.34508 0.86252 0.79436 0.79333 0.81674 1.18361 1.19701 1.19977 1.20681 1.05282 1.02507 0.95003 1.20268 0.99006 0.98399 0.91896 1.21070 0.94948 0.96299 1.02087 1.20925 0.93520 0.97801 0.99395 0.91322 0.91443 0.91557 0.85706 0.85632 0.90803 0.90482 0.90149 0.77285 0.89272 0.86006 0.90938 0.88682 0.87907 0.86504 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.10 -1.14 5.88 -104.57 -0.62 -1.76 16 3 C -0.10 -1.22 9.69 -39.62 -0.38 -1.60 16 4 C -0.10 -1.28 9.79 -39.37 -0.39 -1.67 16 5 C -0.08 -1.20 6.02 -39.04 -0.24 -1.43 16 6 S -0.06 -0.84 20.58 -107.50 -2.21 -3.05 16 7 C -0.11 -1.37 2.43 -27.88 -0.07 -1.43 16 8 H 0.11 1.11 7.02 -51.92 -0.36 0.74 16 9 C -0.13 -1.29 9.18 37.16 0.34 -0.95 16 10 C 0.49 8.42 5.03 -10.98 -0.06 8.37 16 11 O -0.50 -10.80 13.62 5.56 0.08 -10.73 16 12 N -0.64 -11.02 5.31 -9.74 -0.05 -11.08 16 13 C -0.01 -0.14 6.31 -83.57 -0.53 -0.67 16 14 C -0.11 -2.55 9.89 -39.79 -0.39 -2.94 16 15 C -0.15 -3.86 8.63 -39.26 -0.34 -4.20 16 16 C 0.11 2.85 5.57 -106.80 -0.59 2.26 16 17 C -0.46 -12.12 9.04 -37.85 -0.34 -12.46 16 18 H 0.08 2.03 7.89 -52.49 -0.41 1.61 16 19 C 0.07 1.85 5.17 -17.34 -0.09 1.76 16 20 N -0.80 -20.14 10.90 55.55 0.61 -19.53 16 21 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.21 -5.47 9.74 -39.26 -0.38 -5.86 16 26 C -0.08 -1.82 8.58 -39.79 -0.34 -2.16 16 27 C -0.12 -1.73 8.78 -39.36 -0.35 -2.08 16 28 C -0.10 -1.28 9.69 -39.61 -0.38 -1.66 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.39 5.26 8.81 -40.82 -0.36 4.90 16 38 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 41 H 0.09 2.32 8.06 -52.48 -0.42 1.89 16 42 H 0.10 2.45 6.31 -52.48 -0.33 2.12 16 43 H 0.12 1.62 5.13 -52.49 -0.27 1.35 16 44 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -30.95 379.40 -11.52 -42.46 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.84 Total: 11.86 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -4.78 Total: -29.15 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.55 Total: -30.61 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.21 Total: -3.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.95 -11.52 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000555019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.265 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds