Wall clock time and date at job start Tue Mar 31 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38302 * 119.92013 * 2 1 4 4 C 1.38079 * 120.07995 * 180.02562 * 3 2 1 5 5 C 1.38972 * 119.92345 * 359.97438 * 4 3 2 6 6 S 1.76192 * 120.08501 * 180.02562 * 5 4 3 7 7 C 1.81404 * 103.00328 * 173.52269 * 6 5 4 8 8 H 1.09003 * 109.46798 * 53.10965 * 7 6 5 9 9 C 1.53001 * 109.47289 * 173.11064 * 7 6 5 10 10 C 1.50702 * 109.46661 * 293.11273 * 7 6 5 11 11 O 1.21272 * 120.00465 * 339.99493 * 10 7 6 12 12 N 1.34782 * 119.99592 * 159.99818 * 10 7 6 13 13 C 1.39235 * 119.99822 * 175.13103 * 12 10 7 14 14 C 1.39481 * 119.82972 * 147.19454 * 13 12 10 15 15 C 1.36383 * 120.16453 * 179.76161 * 14 13 12 16 16 C 1.40861 * 119.82934 * 0.51281 * 15 14 13 17 17 C 1.41160 * 120.16650 * 179.71804 * 16 15 14 18 18 H 1.07997 * 119.99769 * 205.75957 * 17 16 15 19 19 C 1.39904 * 119.99318 * 25.75562 * 17 16 15 20 20 N 1.30868 * 120.00353 * 15.71906 * 19 17 16 21 21 Si 1.86806 * 119.99403 * 195.72104 * 19 17 16 22 22 H 1.48498 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47153 * 120.00159 * 21 19 17 24 24 H 1.48497 * 109.46902 * 240.00168 * 21 19 17 25 25 C 1.40871 * 119.67342 * 359.74549 * 16 15 14 26 26 C 1.36376 * 119.82802 * 359.97438 * 25 16 15 27 27 C 1.38977 * 119.83746 * 0.27588 * 5 4 3 28 28 C 1.38092 * 119.91839 * 359.44816 * 27 5 4 29 29 H 1.09003 * 109.46882 * 90.00243 * 1 2 3 30 30 H 1.08994 * 109.47037 * 209.99846 * 1 2 3 31 31 H 1.08993 * 109.47247 * 330.00501 * 1 2 3 32 32 H 1.08006 * 119.96086 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.04091 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.46839 * 55.49811 * 9 7 6 35 35 H 1.09002 * 109.47304 * 295.50172 * 9 7 6 36 36 H 1.08992 * 109.47115 * 175.49870 * 9 7 6 37 37 H 0.97006 * 120.00066 * 355.13846 * 12 10 7 38 38 H 1.07999 * 119.91851 * 0.02562 * 14 13 12 39 39 H 1.08006 * 120.08216 * 180.25057 * 15 14 13 40 40 H 0.97000 * 120.00058 * 179.97438 * 20 19 17 41 41 H 1.08004 * 120.08804 * 179.97438 * 25 16 15 42 42 H 1.08005 * 119.91480 * 179.97438 * 26 25 16 43 43 H 1.07999 * 120.04202 * 179.72749 * 27 5 4 44 44 H 1.07999 * 119.96073 * 180.27626 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5776 1.2025 -0.0005 5 6 4.2743 0.0000 -0.0005 6 16 6.0362 0.0000 -0.0005 7 6 6.4443 -1.7563 0.1989 8 1 5.9249 -2.3386 -0.5622 9 6 7.9544 -1.9495 0.0466 10 6 6.0138 -2.2198 1.5667 11 8 5.8275 -1.4105 2.4504 12 7 5.8360 -3.5339 1.8079 13 6 5.5375 -3.9712 3.0956 14 6 4.7197 -5.0863 3.2775 15 6 4.4268 -5.5234 4.5358 16 6 4.9437 -4.8392 5.6533 17 6 4.6403 -5.2819 6.9588 18 1 4.6588 -4.5847 7.7834 19 6 4.3155 -6.6239 7.1844 20 7 4.5848 -7.5244 6.2738 21 14 3.4974 -7.1303 8.7857 22 1 3.3026 -5.9330 9.6422 23 1 2.1801 -7.7506 8.4940 24 1 4.3599 -8.1099 9.4939 25 6 5.7646 -3.7105 5.4615 26 6 6.0534 -3.2887 4.1972 27 6 3.5777 -1.2026 -0.0058 28 6 2.1968 -1.1988 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6549 2.1329 -0.0004 33 1 4.1157 2.1390 -0.0010 34 1 8.4762 -1.3060 0.7550 35 1 8.2535 -1.6895 -0.9688 36 1 8.2094 -2.9904 0.2453 37 1 5.9162 -4.1750 1.0843 38 1 4.3208 -5.6074 2.4198 39 1 3.7967 -6.3895 4.6750 40 1 4.3599 -8.4549 6.4304 41 1 6.1642 -3.1806 6.3136 42 1 6.6822 -2.4232 4.0486 43 1 4.1157 -2.1390 -0.0103 44 1 1.6549 -2.1329 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000555019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:47 Heat of formation + Delta-G solvation = -9.314524 kcal Electronic energy + Delta-G solvation = -26149.672295 eV Core-core repulsion = 22542.816163 eV Total energy + Delta-G solvation = -3606.856133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36159 -40.09930 -39.13278 -36.22721 -35.01476 -34.11220 -33.72219 -31.95207 -31.49501 -30.72451 -28.03510 -27.14503 -25.59810 -23.78358 -23.34744 -22.65175 -22.44360 -21.20026 -19.31501 -18.86177 -18.35020 -18.15232 -17.15033 -16.77572 -16.58706 -16.15713 -15.91896 -15.72234 -15.36379 -15.02598 -14.81645 -14.64481 -14.51962 -14.42215 -14.03095 -13.70635 -13.57260 -13.29276 -13.27435 -13.16125 -13.12517 -12.92818 -12.80050 -12.70072 -12.40472 -12.17978 -11.98045 -11.89197 -11.56753 -11.34444 -11.24086 -10.86479 -10.50887 -10.44050 -9.98948 -9.50413 -8.87665 -8.64196 -8.33310 -6.29505 0.14434 0.36523 0.40826 0.75174 1.11144 1.19569 1.38285 1.41064 1.53252 1.76406 2.20809 2.23150 2.67520 2.72710 3.54287 3.68114 3.73839 3.78814 3.87389 3.96305 4.01391 4.35695 4.38498 4.39687 4.46080 4.60417 4.67721 4.69755 4.73539 4.83829 4.89142 5.04604 5.05965 5.08324 5.12010 5.16587 5.25472 5.28324 5.32737 5.39904 5.60747 5.63171 5.84730 5.95692 5.99180 6.07182 6.34387 6.60825 6.65132 6.91102 6.95801 7.29897 8.31883 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.002910 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.442105 B = 9619.503300 C =11051.623572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.106 4.106 4 C -0.111 4.111 5 C -0.107 4.107 6 S -0.073 6.073 7 C -0.097 4.097 8 H 0.138 0.862 9 C -0.126 4.126 10 C 0.498 3.502 11 O -0.549 6.549 12 N -0.637 5.637 13 C 0.012 3.988 14 C -0.110 4.110 15 C -0.169 4.169 16 C 0.077 3.923 17 C -0.497 4.497 18 H 0.071 0.929 19 C 0.037 3.963 20 N -0.822 5.822 21 Si 0.982 3.018 22 H -0.263 1.263 23 H -0.261 1.261 24 H -0.264 1.264 25 C -0.235 4.235 26 C -0.087 4.087 27 C -0.139 4.139 28 C -0.114 4.114 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.290 0.710 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 8.739 -17.546 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.135 4.135 5 C -0.219 4.219 6 S 0.172 5.828 7 C -0.229 4.229 8 H 0.156 0.844 9 C -0.185 4.185 10 C 0.282 3.718 11 O -0.426 6.426 12 N -0.282 5.282 13 C -0.081 4.081 14 C -0.131 4.131 15 C -0.189 4.189 16 C 0.074 3.926 17 C -0.526 4.526 18 H 0.089 0.911 19 C -0.178 4.178 20 N -0.448 5.448 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.185 1.185 24 H -0.189 1.189 25 C -0.255 4.255 26 C -0.107 4.107 27 C -0.163 4.163 28 C -0.134 4.134 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.827 9.969 -17.118 19.893 hybrid contribution -0.895 -1.712 0.895 2.129 sum -2.722 8.256 -16.223 18.406 Atomic orbital electron populations 1.20826 0.88932 1.03551 1.03388 1.20331 0.97837 0.92740 0.99319 1.21290 0.93170 0.98828 0.99264 1.20994 0.94876 0.96375 1.01236 1.21927 0.97425 0.97135 1.05429 1.85118 0.99055 1.09112 1.89541 1.23832 1.04801 0.97537 0.96765 0.84437 1.21616 0.87450 1.04276 1.05144 1.20942 0.77616 0.82395 0.90809 1.90752 1.50483 1.53923 1.47466 1.42810 1.69007 1.07326 1.09057 1.17157 1.06733 1.00367 0.83888 1.20473 0.98290 0.96996 0.97296 1.20917 1.03871 1.02462 0.91642 1.17973 0.89238 0.91024 0.94357 1.19797 1.43123 0.95259 0.94463 0.91120 1.26703 0.93212 0.95736 1.02125 1.69855 1.35311 1.03301 1.36304 0.85159 0.78657 0.78787 0.77109 1.18665 1.18544 1.18890 1.20797 1.05999 1.02898 0.95780 1.20358 0.99477 0.98688 0.92188 1.21209 0.95644 0.96371 1.03052 1.21208 0.93442 0.98977 0.99764 0.89567 0.91444 0.90347 0.82932 0.84542 0.92242 0.87532 0.88775 0.74647 0.85785 0.87045 0.89957 0.89085 0.88073 0.86476 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.10 -2.23 5.88 -19.83 -0.12 -2.35 16 3 C -0.11 -2.31 9.69 22.25 0.22 -2.10 16 4 C -0.11 -2.81 9.79 22.41 0.22 -2.59 16 5 C -0.11 -3.01 6.02 22.62 0.14 -2.87 16 6 S -0.07 -1.93 20.58 -56.49 -1.16 -3.09 16 7 C -0.10 -2.24 2.43 29.85 0.07 -2.16 16 8 H 0.14 2.39 7.02 -2.39 -0.02 2.38 16 9 C -0.13 -2.21 9.18 71.98 0.66 -1.55 16 10 C 0.50 16.36 5.03 87.66 0.44 16.80 16 11 O -0.55 -23.64 13.62 -3.01 -0.04 -23.68 16 12 N -0.64 -20.65 5.31 -303.11 -1.61 -22.26 16 13 C 0.01 0.53 6.31 38.56 0.24 0.77 16 14 C -0.11 -4.90 9.89 22.14 0.22 -4.68 16 15 C -0.17 -8.76 8.63 22.48 0.19 -8.57 16 16 C 0.08 4.26 5.57 -21.28 -0.12 4.14 16 17 C -0.50 -27.44 9.04 23.39 0.21 -27.23 16 18 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 19 C 0.04 1.87 5.17 85.24 0.44 2.32 16 20 N -0.82 -42.10 10.90 21.82 0.24 -41.86 16 21 Si 0.98 38.26 29.59 68.60 2.03 40.28 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 C -0.23 -12.49 9.74 22.48 0.22 -12.27 16 26 C -0.09 -4.27 8.58 22.13 0.19 -4.08 16 27 C -0.14 -3.89 8.78 22.41 0.20 -3.69 16 28 C -0.11 -2.91 9.69 22.25 0.22 -2.69 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.06 8.08 -2.39 -0.02 1.05 16 31 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.42 9.87 8.81 -92.70 -0.82 9.05 16 38 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 40 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 41 H 0.09 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.10 4.94 6.31 -2.91 -0.02 4.93 16 43 H 0.12 3.09 5.13 -2.91 -0.01 3.08 16 44 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -69.87 379.40 4.02 -65.85 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: 0.21 Total: 38.60 kcal Atomic # 6 Polarization: -58.19 SS G_CDS: 4.35 Total: -53.84 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -1.37 Total: -64.13 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.04 Total: -23.68 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -1.16 Total: -3.09 kcal Total: -69.87 4.02 -65.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000555019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.534 kcal (2) G-P(sol) polarization free energy of solvation -69.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds