Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38307 * 119.92018 * 2 1 4 4 C 1.38072 * 120.07946 * 179.74749 * 3 2 1 5 5 C 1.38975 * 119.92109 * 0.25472 * 4 3 2 6 6 S 1.76202 * 120.07840 * 179.97438 * 5 4 3 7 7 C 1.81401 * 103.00153 * 95.64563 * 6 5 4 8 8 H 1.08995 * 109.46795 * 47.46199 * 7 6 5 9 9 C 1.53002 * 109.46892 * 287.46059 * 7 6 5 10 10 C 1.50703 * 109.47001 * 167.45979 * 7 6 5 11 11 O 1.21273 * 120.00341 * 25.00053 * 10 7 6 12 12 N 1.34781 * 119.99644 * 204.99868 * 10 7 6 13 13 C 1.39238 * 119.99736 * 175.26703 * 12 10 7 14 14 C 1.39481 * 119.83093 * 217.09276 * 13 12 10 15 15 C 1.36373 * 120.16621 * 179.72252 * 14 13 12 16 16 C 1.40872 * 119.82701 * 0.56985 * 15 14 13 17 17 C 1.41150 * 120.16382 * 179.68127 * 16 15 14 18 18 H 1.07999 * 119.99997 * 157.77680 * 17 16 15 19 19 C 1.39907 * 120.00018 * 337.78246 * 17 16 15 20 20 N 1.30872 * 119.99994 * 332.31364 * 19 17 16 21 21 Si 1.86797 * 120.00308 * 152.32033 * 19 17 16 22 22 H 1.48507 * 109.47169 * 94.95360 * 21 19 17 23 23 H 1.48502 * 109.47231 * 214.95590 * 21 19 17 24 24 H 1.48501 * 109.47051 * 334.95751 * 21 19 17 25 25 C 1.40872 * 119.67317 * 359.69766 * 16 15 14 26 26 C 1.36366 * 119.82597 * 0.02562 * 25 16 15 27 27 C 1.38972 * 119.84043 * 0.02562 * 5 4 3 28 28 C 1.38079 * 119.91814 * 359.97438 * 27 5 4 29 29 H 1.09001 * 109.46880 * 89.99802 * 1 2 3 30 30 H 1.08993 * 109.47086 * 209.99629 * 1 2 3 31 31 H 1.08994 * 109.47297 * 330.00029 * 1 2 3 32 32 H 1.08003 * 119.95624 * 0.02562 * 3 2 1 33 33 H 1.08012 * 120.04050 * 180.28113 * 4 3 2 34 34 H 1.09001 * 109.47074 * 63.68556 * 9 7 6 35 35 H 1.08999 * 109.46649 * 183.68530 * 9 7 6 36 36 H 1.09001 * 109.47294 * 303.68054 * 9 7 6 37 37 H 0.97000 * 119.99893 * 355.27003 * 12 10 7 38 38 H 1.07999 * 119.91684 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.08941 * 180.25370 * 15 14 13 40 40 H 0.96994 * 120.00368 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.08503 * 179.97438 * 25 16 15 42 42 H 1.08006 * 119.91702 * 179.97438 * 26 25 16 43 43 H 1.08003 * 120.03949 * 180.02562 * 27 5 4 44 44 H 1.07998 * 119.96021 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5776 1.2026 0.0053 5 6 4.2741 0.0000 0.0052 6 16 6.0361 0.0001 0.0112 7 6 6.4382 -0.1773 1.7712 8 1 5.8416 -0.9820 2.2008 9 6 6.1287 1.1321 2.4995 10 6 7.9022 -0.5020 1.9217 11 8 8.6881 -0.1732 1.0587 12 7 8.3379 -1.1579 3.0156 13 6 9.6721 -1.5449 3.1099 14 6 10.0010 -2.7620 3.7065 15 6 11.3051 -3.1504 3.7973 16 6 12.3219 -2.3133 3.2976 17 6 13.6745 -2.7052 3.3940 18 1 14.4089 -2.2796 2.7263 19 6 14.0637 -3.6451 4.3544 20 7 13.3845 -3.7638 5.4668 21 14 15.5530 -4.7306 4.0493 22 1 16.7502 -4.1166 4.6780 23 1 15.3169 -6.0725 4.6399 24 1 15.7760 -4.8654 2.5873 25 6 11.9822 -1.0830 2.7015 26 6 10.6733 -0.7108 2.6127 27 6 3.5776 -1.2026 -0.0007 28 6 2.1969 -1.1987 -0.0059 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6548 2.1329 0.0004 33 1 4.1157 2.1391 0.0099 34 1 5.0587 1.3333 2.4464 35 1 6.4311 1.0475 3.5433 36 1 6.6758 1.9484 2.0278 37 1 7.7220 -1.3603 3.7372 38 1 9.2206 -3.4004 4.0937 39 1 11.5580 -4.0950 4.2558 40 1 13.6545 -4.4151 6.1328 41 1 12.7565 -0.4358 2.3165 42 1 10.4112 0.2324 2.1564 43 1 4.1157 -2.1390 -0.0003 44 1 1.6549 -2.1328 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000555020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = 3.441010 kcal Electronic energy + Delta-G solvation = -25139.375088 eV Core-core repulsion = 21533.072077 eV Total energy + Delta-G solvation = -3606.303011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.70674 -39.47364 -37.29453 -34.48327 -33.57497 -33.07567 -32.56791 -31.32163 -29.56950 -28.93481 -27.33743 -25.53450 -24.10913 -22.99034 -21.93764 -21.63463 -20.75988 -19.69205 -18.06320 -17.38652 -16.78296 -16.60373 -15.70687 -15.64220 -15.28141 -15.06964 -14.79236 -14.26150 -14.01824 -13.99256 -13.83335 -13.76147 -13.30592 -12.75238 -12.70868 -12.61742 -12.51434 -12.32842 -12.15068 -12.02213 -11.90792 -11.42824 -11.40379 -11.38693 -11.13268 -10.95332 -10.54584 -10.25050 -10.15574 -9.74146 -9.47530 -9.28287 -9.11548 -8.86695 -8.70902 -7.75738 -7.55563 -7.12030 -6.87615 -4.29379 0.59324 1.07011 1.56824 2.44801 2.57865 2.95746 3.04934 3.09659 3.11949 3.33028 3.40253 3.66948 3.89356 4.46188 4.47955 4.52112 4.67664 4.78810 4.81306 4.91077 5.05400 5.09937 5.16407 5.31747 5.32589 5.43445 5.54476 5.60742 5.68475 5.69212 5.93110 5.95814 6.07752 6.18076 6.20123 6.42631 6.57465 6.74981 6.92873 7.00161 7.14264 7.27256 7.56484 7.67077 7.86533 8.01341 8.24060 8.25533 8.54554 8.70565 8.84058 8.97873 10.05289 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.001893 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.201313 B =14784.286588 C =15048.946013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.065 4.065 3 C -0.132 4.132 4 C -0.064 4.064 5 C -0.137 4.137 6 S -0.078 6.078 7 C -0.102 4.102 8 H 0.103 0.897 9 C -0.138 4.138 10 C 0.519 3.481 11 O -0.514 6.514 12 N -0.642 5.642 13 C -0.020 4.020 14 C -0.103 4.103 15 C -0.166 4.166 16 C 0.111 3.889 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.083 3.917 20 N -0.777 5.777 21 Si 0.900 3.100 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.222 4.222 26 C -0.067 4.067 27 C -0.068 4.068 28 C -0.131 4.131 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.394 0.606 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.282 0.718 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.187 5.332 -4.680 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.152 4.152 4 C -0.085 4.085 5 C -0.248 4.248 6 S 0.156 5.844 7 C -0.234 4.234 8 H 0.121 0.879 9 C -0.197 4.197 10 C 0.303 3.697 11 O -0.390 6.390 12 N -0.286 5.286 13 C -0.112 4.112 14 C -0.123 4.123 15 C -0.185 4.185 16 C 0.108 3.892 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.137 4.137 20 N -0.401 5.401 21 Si 0.724 3.276 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.242 4.242 26 C -0.087 4.087 27 C -0.089 4.089 28 C -0.151 4.151 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.228 0.772 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.149 0.851 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.866 5.527 -5.943 23.323 hybrid contribution -0.650 -0.861 1.472 1.825 sum -22.515 4.667 -4.470 23.424 Atomic orbital electron populations 1.20855 0.90980 1.03036 1.02605 1.20115 0.96254 0.93256 0.96856 1.21099 0.94005 0.97731 1.02351 1.21618 0.93955 0.97522 0.95359 1.22037 0.98700 0.95560 1.08512 1.86249 0.95415 1.96491 1.06277 1.23537 0.98500 1.02826 0.98523 0.87922 1.21984 1.02340 0.95031 1.00367 1.19537 0.88051 0.79680 0.82396 1.90721 1.55691 1.51499 1.41065 1.42821 1.10378 1.56672 1.18679 1.17062 0.81157 0.97692 1.15334 1.20175 0.96542 0.93873 1.01752 1.20701 0.90905 1.00586 1.06352 1.17635 0.93342 0.89649 0.88537 1.19550 0.94248 1.20238 1.14857 0.90075 1.25947 0.98109 0.96212 0.93456 1.69906 1.37711 1.28274 1.04174 0.86432 0.81248 0.79528 0.80399 1.19475 1.19917 1.18154 1.20618 0.94502 0.98034 1.11083 1.20331 0.92233 0.97713 0.98418 1.21670 0.94135 0.97599 0.95488 1.21098 0.93984 0.97779 1.02202 0.90822 0.91305 0.91314 0.85619 0.84987 0.91606 0.91299 0.90561 0.77239 0.89266 0.86983 0.90670 0.88688 0.87797 0.85085 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.00 0.36 -0.24 16 2 C -0.06 -0.50 5.88 -104.57 -0.62 -1.12 16 3 C -0.13 -1.07 9.69 -39.62 -0.38 -1.45 16 4 C -0.06 -0.61 9.61 -39.37 -0.38 -0.99 16 5 C -0.14 -1.53 5.60 -39.04 -0.22 -1.75 16 6 S -0.08 -1.08 20.36 -107.50 -2.19 -3.27 16 7 C -0.10 -1.35 3.11 -27.88 -0.09 -1.43 16 8 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 9 C -0.14 -1.50 9.13 37.16 0.34 -1.16 16 10 C 0.52 9.19 6.78 -10.98 -0.07 9.11 16 11 O -0.51 -11.26 13.68 5.56 0.08 -11.19 16 12 N -0.64 -11.40 5.30 -9.74 -0.05 -11.45 16 13 C -0.02 -0.46 6.27 -83.57 -0.52 -0.98 16 14 C -0.10 -2.36 9.90 -39.79 -0.39 -2.76 16 15 C -0.17 -4.24 8.70 -39.26 -0.34 -4.59 16 16 C 0.11 2.99 5.58 -106.80 -0.60 2.39 16 17 C -0.46 -12.22 8.98 -37.85 -0.34 -12.56 16 18 H 0.08 2.08 7.98 -52.49 -0.42 1.66 16 19 C 0.08 2.06 4.91 -17.34 -0.09 1.97 16 20 N -0.78 -19.61 11.45 55.55 0.64 -18.97 16 21 Si 0.90 18.31 29.64 -169.99 -5.04 13.27 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 25 C -0.22 -5.71 9.74 -39.26 -0.38 -6.09 16 26 C -0.07 -1.63 8.60 -39.79 -0.34 -1.98 16 27 C -0.07 -0.69 9.79 -39.37 -0.39 -1.07 16 28 C -0.13 -1.10 9.69 -39.62 -0.38 -1.48 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.06 0.61 7.91 -51.93 -0.41 0.20 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.39 5.51 8.82 -40.82 -0.36 5.15 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.11 2.91 6.36 -52.49 -0.33 2.58 16 40 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 41 H 0.09 2.32 8.06 -52.48 -0.42 1.90 16 42 H 0.10 2.50 6.37 -52.48 -0.33 2.16 16 43 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -30.74 386.53 -11.63 -42.38 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.06 Total: 9.57 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -4.83 Total: -26.16 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.58 Total: -30.42 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.04 Total: 13.27 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.19 Total: -3.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.74 -11.63 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000555020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.818 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds