Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38307 * 119.92018 * 2 1 4 4 C 1.38072 * 120.07946 * 179.74749 * 3 2 1 5 5 C 1.38975 * 119.92109 * 0.25472 * 4 3 2 6 6 S 1.76202 * 120.07840 * 179.97438 * 5 4 3 7 7 C 1.81401 * 103.00153 * 95.64563 * 6 5 4 8 8 H 1.08995 * 109.46795 * 47.46199 * 7 6 5 9 9 C 1.53002 * 109.46892 * 287.46059 * 7 6 5 10 10 C 1.50703 * 109.47001 * 167.45979 * 7 6 5 11 11 O 1.21273 * 120.00341 * 25.00053 * 10 7 6 12 12 N 1.34781 * 119.99644 * 204.99868 * 10 7 6 13 13 C 1.39238 * 119.99736 * 175.26703 * 12 10 7 14 14 C 1.39481 * 119.83093 * 217.09276 * 13 12 10 15 15 C 1.36373 * 120.16621 * 179.72252 * 14 13 12 16 16 C 1.40872 * 119.82701 * 0.56985 * 15 14 13 17 17 C 1.41150 * 120.16382 * 179.68127 * 16 15 14 18 18 H 1.07999 * 119.99997 * 157.77680 * 17 16 15 19 19 C 1.39907 * 120.00018 * 337.78246 * 17 16 15 20 20 N 1.30872 * 119.99994 * 332.31364 * 19 17 16 21 21 Si 1.86797 * 120.00308 * 152.32033 * 19 17 16 22 22 H 1.48507 * 109.47169 * 94.95360 * 21 19 17 23 23 H 1.48502 * 109.47231 * 214.95590 * 21 19 17 24 24 H 1.48501 * 109.47051 * 334.95751 * 21 19 17 25 25 C 1.40872 * 119.67317 * 359.69766 * 16 15 14 26 26 C 1.36366 * 119.82597 * 0.02562 * 25 16 15 27 27 C 1.38972 * 119.84043 * 0.02562 * 5 4 3 28 28 C 1.38079 * 119.91814 * 359.97438 * 27 5 4 29 29 H 1.09001 * 109.46880 * 89.99802 * 1 2 3 30 30 H 1.08993 * 109.47086 * 209.99629 * 1 2 3 31 31 H 1.08994 * 109.47297 * 330.00029 * 1 2 3 32 32 H 1.08003 * 119.95624 * 0.02562 * 3 2 1 33 33 H 1.08012 * 120.04050 * 180.28113 * 4 3 2 34 34 H 1.09001 * 109.47074 * 63.68556 * 9 7 6 35 35 H 1.08999 * 109.46649 * 183.68530 * 9 7 6 36 36 H 1.09001 * 109.47294 * 303.68054 * 9 7 6 37 37 H 0.97000 * 119.99893 * 355.27003 * 12 10 7 38 38 H 1.07999 * 119.91684 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.08941 * 180.25370 * 15 14 13 40 40 H 0.96994 * 120.00368 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.08503 * 179.97438 * 25 16 15 42 42 H 1.08006 * 119.91702 * 179.97438 * 26 25 16 43 43 H 1.08003 * 120.03949 * 180.02562 * 27 5 4 44 44 H 1.07998 * 119.96021 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5776 1.2026 0.0053 5 6 4.2741 0.0000 0.0052 6 16 6.0361 0.0001 0.0112 7 6 6.4382 -0.1773 1.7712 8 1 5.8416 -0.9820 2.2008 9 6 6.1287 1.1321 2.4995 10 6 7.9022 -0.5020 1.9217 11 8 8.6881 -0.1732 1.0587 12 7 8.3379 -1.1579 3.0156 13 6 9.6721 -1.5449 3.1099 14 6 10.0010 -2.7620 3.7065 15 6 11.3051 -3.1504 3.7973 16 6 12.3219 -2.3133 3.2976 17 6 13.6745 -2.7052 3.3940 18 1 14.4089 -2.2796 2.7263 19 6 14.0637 -3.6451 4.3544 20 7 13.3845 -3.7638 5.4668 21 14 15.5530 -4.7306 4.0493 22 1 16.7502 -4.1166 4.6780 23 1 15.3169 -6.0725 4.6399 24 1 15.7760 -4.8654 2.5873 25 6 11.9822 -1.0830 2.7015 26 6 10.6733 -0.7108 2.6127 27 6 3.5776 -1.2026 -0.0007 28 6 2.1969 -1.1987 -0.0059 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6548 2.1329 0.0004 33 1 4.1157 2.1391 0.0099 34 1 5.0587 1.3333 2.4464 35 1 6.4311 1.0475 3.5433 36 1 6.6758 1.9484 2.0278 37 1 7.7220 -1.3603 3.7372 38 1 9.2206 -3.4004 4.0937 39 1 11.5580 -4.0950 4.2558 40 1 13.6545 -4.4151 6.1328 41 1 12.7565 -0.4358 2.3165 42 1 10.4112 0.2324 2.1564 43 1 4.1157 -2.1390 -0.0003 44 1 1.6549 -2.1328 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000555020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = -11.232440 kcal Electronic energy + Delta-G solvation = -25140.011377 eV Core-core repulsion = 21533.072077 eV Total energy + Delta-G solvation = -3606.939300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.27647 -40.12057 -39.11805 -36.23497 -35.00955 -34.14052 -33.56734 -31.97735 -31.48235 -30.77723 -27.87436 -27.15383 -25.46637 -23.67095 -23.45609 -22.67475 -22.43714 -21.23684 -19.35012 -19.08330 -18.21775 -17.91149 -17.08653 -16.50968 -16.40512 -16.24355 -15.91584 -15.75529 -15.40719 -15.04673 -14.82608 -14.59143 -14.45018 -14.39184 -14.00939 -13.79938 -13.75152 -13.31593 -13.26931 -13.12181 -13.07801 -12.93905 -12.82477 -12.69460 -12.36222 -12.15310 -12.00024 -11.91364 -11.59598 -11.21877 -11.10709 -10.80495 -10.50077 -9.94669 -9.58905 -9.49822 -9.00375 -8.82253 -8.72536 -6.26496 -0.18353 0.40928 0.64363 0.78168 1.12297 1.36724 1.40914 1.52471 1.56858 1.76952 2.19771 2.26987 2.65569 2.71825 3.61422 3.71734 3.79792 3.87101 3.96092 3.97686 4.05629 4.37142 4.39727 4.46711 4.47753 4.59873 4.66523 4.73176 4.78852 4.85390 4.88990 5.05537 5.08890 5.09353 5.13769 5.19395 5.26599 5.33997 5.38961 5.40873 5.60357 5.62697 5.85049 5.95255 5.99645 6.06548 6.33718 6.59156 6.64800 6.88303 6.95964 7.30847 8.22858 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.001893 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.201313 B =14784.286588 C =15048.946013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.132 4.132 4 C -0.072 4.072 5 C -0.144 4.144 6 S -0.134 6.134 7 C -0.085 4.085 8 H 0.128 0.872 9 C -0.132 4.132 10 C 0.519 3.481 11 O -0.559 6.559 12 N -0.635 5.635 13 C -0.006 4.006 14 C -0.101 4.101 15 C -0.183 4.183 16 C 0.081 3.919 17 C -0.501 4.501 18 H 0.074 0.926 19 C 0.047 3.953 20 N -0.804 5.804 21 Si 0.975 3.025 22 H -0.260 1.260 23 H -0.260 1.260 24 H -0.263 1.263 25 C -0.243 4.243 26 C -0.078 4.078 27 C -0.081 4.081 28 C -0.133 4.133 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.294 0.706 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.277 4.785 -3.999 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.152 4.152 4 C -0.092 4.092 5 C -0.256 4.256 6 S 0.099 5.901 7 C -0.216 4.216 8 H 0.146 0.854 9 C -0.191 4.191 10 C 0.305 3.695 11 O -0.437 6.437 12 N -0.280 5.280 13 C -0.099 4.099 14 C -0.121 4.121 15 C -0.203 4.203 16 C 0.079 3.921 17 C -0.528 4.528 18 H 0.092 0.908 19 C -0.171 4.171 20 N -0.428 5.428 21 Si 0.796 3.204 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.186 1.186 25 C -0.263 4.263 26 C -0.098 4.098 27 C -0.102 4.102 28 C -0.153 4.153 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.167 0.833 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.147 0.853 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -24.998 4.991 -5.234 26.023 hybrid contribution 0.089 -0.605 1.210 1.356 sum -24.909 4.386 -4.023 25.610 Atomic orbital electron populations 1.20921 0.88833 1.04150 1.03476 1.20501 0.97845 0.92813 0.95116 1.21392 0.93344 0.99047 1.01405 1.21723 0.94809 0.97118 0.95589 1.21856 0.96125 0.96737 1.10864 1.86453 0.99319 1.96715 1.07596 1.23416 0.94872 1.04848 0.98476 0.85445 1.21971 1.03567 0.93134 1.00464 1.20308 0.89839 0.78030 0.81277 1.90707 1.57502 1.52953 1.42546 1.42720 1.08913 1.56529 1.19832 1.17112 0.82956 0.96855 1.13022 1.20451 0.96450 0.94234 1.00917 1.20729 0.91940 1.00387 1.07278 1.17956 0.94251 0.90341 0.89585 1.19751 0.94328 1.22572 1.16196 0.90782 1.26732 1.01202 0.96654 0.92547 1.69906 1.39303 1.28843 1.04764 0.85307 0.77439 0.77835 0.79868 1.18449 1.18426 1.18646 1.20737 0.95293 0.98215 1.12095 1.20435 0.92365 0.98146 0.98893 1.21745 0.95057 0.97180 0.96177 1.21359 0.93286 0.99122 1.01531 0.89922 0.90350 0.90141 0.83259 0.84636 0.89442 0.89987 0.91873 0.74641 0.85761 0.87812 0.89544 0.89017 0.87999 0.85264 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.01 71.24 0.71 -0.04 16 2 C -0.06 -0.77 5.88 -19.83 -0.12 -0.89 16 3 C -0.13 -1.76 9.69 22.25 0.22 -1.54 16 4 C -0.07 -1.26 9.61 22.41 0.22 -1.04 16 5 C -0.14 -3.07 5.60 22.62 0.13 -2.94 16 6 S -0.13 -3.75 20.36 -56.49 -1.15 -4.90 16 7 C -0.09 -2.13 3.11 29.85 0.09 -2.03 16 8 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 9 C -0.13 -2.63 9.13 71.98 0.66 -1.97 16 10 C 0.52 18.09 6.78 87.66 0.59 18.68 16 11 O -0.56 -24.98 13.68 -3.01 -0.04 -25.02 16 12 N -0.63 -21.68 5.30 -303.11 -1.61 -23.29 16 13 C -0.01 -0.28 6.27 38.56 0.24 -0.04 16 14 C -0.10 -4.55 9.90 22.13 0.22 -4.33 16 15 C -0.18 -9.60 8.70 22.48 0.20 -9.40 16 16 C 0.08 4.55 5.58 -21.27 -0.12 4.43 16 17 C -0.50 -27.64 8.98 23.39 0.21 -27.43 16 18 H 0.07 4.02 7.98 -2.91 -0.02 3.99 16 19 C 0.05 2.36 4.91 85.24 0.42 2.77 16 20 N -0.80 -41.03 11.45 21.82 0.25 -40.78 16 21 Si 0.98 37.80 29.64 68.60 2.03 39.84 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 C -0.24 -13.11 9.74 22.48 0.22 -12.89 16 26 C -0.08 -3.93 8.60 22.13 0.19 -3.74 16 27 C -0.08 -1.51 9.79 22.41 0.22 -1.29 16 28 C -0.13 -1.89 9.69 22.25 0.22 -1.68 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 0.39 8.09 -2.39 -0.02 0.37 16 31 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 32 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.14 2.18 8.06 -2.90 -0.02 2.16 16 34 H 0.09 1.39 7.91 -2.39 -0.02 1.37 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.42 10.56 8.82 -92.71 -0.82 9.74 16 38 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 39 H 0.10 5.51 6.36 -2.91 -0.02 5.49 16 40 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 41 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.10 5.08 6.37 -2.91 -0.02 5.07 16 43 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.73 386.53 4.19 -65.54 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.20 Total: 33.97 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 4.51 Total: -45.37 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -1.36 Total: -64.06 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.04 Total: -25.02 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.15 Total: -4.90 kcal Total: -69.73 4.19 -65.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000555020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.306 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds