Wall clock time and date at job start Tue Mar 31 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38311 * 119.91655 * 2 1 4 4 C 1.38087 * 120.07562 * 180.27862 * 3 2 1 5 5 C 1.38974 * 119.92050 * 359.48931 * 4 3 2 6 6 S 1.76201 * 120.07646 * 180.27776 * 5 4 3 7 7 C 1.81401 * 102.99836 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47411 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47524 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99802 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00293 * 179.97438 * 9 8 7 12 12 C 1.39233 * 119.99931 * 175.70840 * 11 9 8 13 13 C 1.39488 * 119.83228 * 215.01498 * 12 11 9 14 14 C 1.36375 * 120.16743 * 179.76161 * 13 12 11 15 15 C 1.40876 * 119.82835 * 0.51674 * 14 13 12 16 16 C 1.41149 * 120.16093 * 179.71893 * 15 14 13 17 17 H 1.08004 * 119.99568 * 214.79904 * 16 15 14 18 18 C 1.39909 * 120.00448 * 34.80274 * 16 15 14 19 19 N 1.30873 * 119.99327 * 355.55876 * 18 16 15 20 20 Si 1.86800 * 119.99987 * 175.55784 * 18 16 15 21 21 H 1.48496 * 109.47395 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46740 * 119.99978 * 20 18 16 23 23 H 1.48499 * 109.47049 * 239.99914 * 20 18 16 24 24 C 1.40865 * 119.67014 * 359.73925 * 15 14 13 25 25 C 1.36376 * 119.83323 * 359.97438 * 24 15 14 26 26 C 1.38977 * 119.84144 * 0.25895 * 5 4 3 27 27 C 1.38082 * 119.91860 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47223 * 270.22876 * 1 2 3 29 29 H 1.08997 * 109.47482 * 30.23372 * 1 2 3 30 30 H 1.09002 * 109.46703 * 150.23333 * 1 2 3 31 31 H 1.07999 * 119.96061 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.03553 * 179.76961 * 4 3 2 33 33 H 1.09004 * 109.47244 * 300.00234 * 7 6 5 34 34 H 1.09006 * 109.46965 * 60.00107 * 7 6 5 35 35 H 1.09004 * 109.47181 * 300.00362 * 8 7 6 36 36 H 1.08998 * 109.47044 * 59.99867 * 8 7 6 37 37 H 0.97001 * 119.99594 * 355.71563 * 11 9 8 38 38 H 1.07999 * 119.91513 * 0.02562 * 13 12 11 39 39 H 1.07997 * 120.08509 * 180.25047 * 14 13 12 40 40 H 0.97003 * 119.98736 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.08797 * 179.97438 * 24 15 14 42 42 H 1.07998 * 119.91725 * 179.97438 * 25 24 15 43 43 H 1.07998 * 120.03927 * 180.02562 * 26 5 4 44 44 H 1.07997 * 119.96039 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1988 0.0000 4 6 3.5776 1.2027 -0.0058 5 6 4.2742 0.0001 -0.0009 6 16 6.0362 0.0002 -0.0009 7 6 6.4444 -1.7672 0.0055 8 6 7.9646 -1.9397 0.0054 9 6 8.3037 -3.4080 0.0114 10 8 7.4167 -4.2351 0.0148 11 7 9.5926 -3.8020 0.0119 12 6 9.9069 -5.1550 0.1076 13 6 11.0445 -5.5552 0.8085 14 6 11.3562 -6.8790 0.9107 15 6 10.5317 -7.8423 0.2968 16 6 10.8509 -9.2139 0.3931 17 1 10.6424 -9.8761 -0.4342 18 6 11.4374 -9.7155 1.5601 19 7 11.7696 -8.8998 2.5281 20 14 11.7459 -11.5494 1.7365 21 1 11.2831 -12.2494 0.5114 22 1 13.1989 -11.7908 1.9262 23 1 11.0007 -12.0658 2.9126 24 6 9.3875 -7.4300 -0.4138 25 6 9.0855 -6.1031 -0.5024 26 6 3.5777 -1.2025 0.0043 27 6 2.1969 -1.1987 0.0052 28 1 -0.3633 0.0041 1.0276 29 1 -0.3634 0.8878 -0.5174 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6548 2.1330 0.0004 32 1 4.1156 2.1391 -0.0096 33 1 6.0254 -2.2337 0.8971 34 1 6.0254 -2.2401 -0.8829 35 1 8.3831 -1.4733 -0.8865 36 1 8.3839 -1.4667 0.8935 37 1 10.3012 -3.1429 -0.0543 38 1 11.6778 -4.8152 1.2751 39 1 12.2351 -7.1876 1.4571 40 1 12.1766 -9.2476 3.3370 41 1 8.7510 -8.1628 -0.8874 42 1 8.2088 -5.7854 -1.0472 43 1 4.1158 -2.1389 0.0086 44 1 1.6550 -2.1328 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000555084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:44 Heat of formation + Delta-G solvation = -2.978686 kcal Electronic energy + Delta-G solvation = -24605.937258 eV Core-core repulsion = 20999.355868 eV Total energy + Delta-G solvation = -3606.581390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.78966 -39.41842 -37.37176 -34.53740 -33.30714 -33.09366 -32.75045 -31.22621 -29.62526 -28.93543 -27.40677 -25.79954 -24.17863 -22.75126 -21.84286 -21.51633 -20.73141 -19.65283 -17.84028 -17.45497 -17.10299 -16.40701 -15.84634 -15.79980 -15.58624 -15.19285 -14.83189 -14.21742 -14.15448 -14.02923 -13.80417 -13.74874 -13.04883 -13.02722 -12.70575 -12.64640 -12.61291 -12.38511 -12.16608 -11.75770 -11.60969 -11.59483 -11.38813 -11.32199 -11.17954 -10.97913 -10.76102 -10.41817 -10.05052 -9.74512 -9.52349 -9.48165 -9.25918 -9.17575 -8.92058 -7.58116 -7.57566 -6.90254 -6.64607 -4.37145 0.91320 1.10093 1.24307 2.17503 2.49136 2.97070 3.05858 3.08562 3.13825 3.29118 3.39041 3.70335 3.96254 4.49369 4.51120 4.59216 4.66608 4.69370 4.73988 4.97018 5.02828 5.09989 5.26398 5.32081 5.37659 5.40341 5.48867 5.63068 5.66269 5.68924 5.73803 6.01349 6.03450 6.16093 6.29893 6.40721 6.63444 6.71117 6.87652 7.03912 7.17120 7.26467 7.60769 7.70216 7.82329 8.03487 8.21305 8.28350 8.58600 8.68348 8.90153 8.96696 10.26515 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.001739 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.449916 B =16094.460806 C =17013.176697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.105 4.105 4 C -0.098 4.098 5 C -0.085 4.085 6 S -0.123 6.123 7 C -0.087 4.087 8 C -0.124 4.124 9 C 0.504 3.496 10 O -0.532 6.532 11 N -0.649 5.649 12 C 0.001 3.999 13 C -0.120 4.120 14 C -0.141 4.141 15 C 0.100 3.900 16 C -0.460 4.460 17 H 0.077 0.923 18 C 0.069 3.931 19 N -0.811 5.811 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.206 4.206 25 C -0.085 4.085 26 C -0.127 4.127 27 C -0.100 4.100 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.397 0.603 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.277 0.723 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 19.092 -3.354 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.198 4.198 6 S 0.122 5.878 7 C -0.236 4.236 8 C -0.166 4.166 9 C 0.288 3.712 10 O -0.409 6.409 11 N -0.292 5.292 12 C -0.091 4.091 13 C -0.140 4.140 14 C -0.161 4.161 15 C 0.097 3.903 16 C -0.491 4.491 17 H 0.095 0.905 18 C -0.146 4.146 19 N -0.439 5.439 20 Si 0.740 3.260 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.226 4.226 25 C -0.105 4.105 26 C -0.150 4.150 27 C -0.120 4.120 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.231 0.769 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.721 19.395 -3.109 23.402 hybrid contribution -0.364 -1.504 0.316 1.579 sum -13.085 17.891 -2.793 22.341 Atomic orbital electron populations 1.20784 0.91039 1.02816 1.02367 1.19971 0.96212 0.93124 1.00411 1.20948 0.93483 0.97672 1.00360 1.20733 0.93966 0.96330 1.01142 1.21713 0.96652 0.96478 1.04919 1.85284 0.99330 1.10763 1.92416 1.23383 0.98951 0.93859 1.07377 1.21330 0.94614 0.95193 1.05461 1.20290 0.83197 0.90081 0.77592 1.90697 1.46897 1.54108 1.49167 1.42965 1.06836 1.07651 1.71705 1.17271 1.01387 0.81327 1.09144 1.20323 0.97099 0.96663 0.99937 1.21195 1.01259 0.90346 1.03299 1.17745 0.89232 0.93602 0.89720 1.19545 1.35091 0.93919 1.00547 0.90528 1.25891 0.92952 1.00351 0.95404 1.69773 1.32133 1.36223 1.05737 0.86141 0.78507 0.82113 0.79192 1.18568 1.19967 1.19982 1.20807 0.98935 0.94242 1.08598 1.20392 0.98512 0.92823 0.98778 1.21308 0.94986 0.96942 1.01792 1.20982 0.93595 0.97819 0.99579 0.91142 0.91540 0.91476 0.85637 0.85527 0.88406 0.88459 0.88118 0.88022 0.76947 0.89039 0.85010 0.91173 0.88590 0.87497 0.85308 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.09 -0.82 5.88 -104.57 -0.62 -1.44 16 3 C -0.10 -0.89 9.69 -39.61 -0.38 -1.28 16 4 C -0.10 -0.95 9.79 -39.36 -0.39 -1.33 16 5 C -0.08 -0.94 6.11 -39.04 -0.24 -1.18 16 6 S -0.12 -1.31 21.92 -107.50 -2.36 -3.66 16 7 C -0.09 -1.00 3.62 37.16 0.13 -0.86 16 8 C -0.12 -1.37 5.71 -27.89 -0.16 -1.53 16 9 C 0.50 8.14 7.66 -10.99 -0.08 8.05 16 10 O -0.53 -10.78 13.40 5.56 0.07 -10.71 16 11 N -0.65 -10.83 5.30 -9.74 -0.05 -10.88 16 12 C 0.00 0.02 6.31 -83.57 -0.53 -0.51 16 13 C -0.12 -2.70 9.90 -39.79 -0.39 -3.09 16 14 C -0.14 -3.59 8.62 -39.26 -0.34 -3.93 16 15 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 16 C -0.46 -12.24 9.02 -37.85 -0.34 -12.58 16 17 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 18 C 0.07 1.74 5.42 -17.33 -0.09 1.65 16 19 N -0.81 -21.03 10.60 55.55 0.59 -20.44 16 20 Si 0.92 18.95 29.56 -169.99 -5.03 13.92 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.21 -5.18 9.74 -39.26 -0.38 -5.57 16 25 C -0.09 -2.01 8.61 -39.79 -0.34 -2.36 16 26 C -0.13 -1.40 9.36 -39.37 -0.37 -1.77 16 27 C -0.10 -0.97 9.69 -39.61 -0.38 -1.36 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.10 1.21 7.70 -51.92 -0.40 0.81 16 34 H 0.10 1.17 7.71 -51.92 -0.40 0.77 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 5.05 8.82 -40.82 -0.36 4.69 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 40 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 41 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 42 H 0.11 2.48 6.22 -52.49 -0.33 2.16 16 43 H 0.13 1.43 5.88 -52.49 -0.31 1.12 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -30.54 382.30 -12.03 -42.58 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.89 Total: 10.76 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -5.14 Total: -27.33 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.54 Total: -31.32 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.36 Total: -3.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.54 -12.03 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000555084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.597 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds