Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38311 * 119.91655 * 2 1 4 4 C 1.38087 * 120.07562 * 180.27862 * 3 2 1 5 5 C 1.38974 * 119.92050 * 359.48931 * 4 3 2 6 6 S 1.76201 * 120.07646 * 180.27776 * 5 4 3 7 7 C 1.81401 * 102.99836 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47411 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47524 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99802 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00293 * 179.97438 * 9 8 7 12 12 C 1.39233 * 119.99931 * 175.70840 * 11 9 8 13 13 C 1.39488 * 119.83228 * 215.01498 * 12 11 9 14 14 C 1.36375 * 120.16743 * 179.76161 * 13 12 11 15 15 C 1.40876 * 119.82835 * 0.51674 * 14 13 12 16 16 C 1.41149 * 120.16093 * 179.71893 * 15 14 13 17 17 H 1.08004 * 119.99568 * 214.79904 * 16 15 14 18 18 C 1.39909 * 120.00448 * 34.80274 * 16 15 14 19 19 N 1.30873 * 119.99327 * 355.55876 * 18 16 15 20 20 Si 1.86800 * 119.99987 * 175.55784 * 18 16 15 21 21 H 1.48496 * 109.47395 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46740 * 119.99978 * 20 18 16 23 23 H 1.48499 * 109.47049 * 239.99914 * 20 18 16 24 24 C 1.40865 * 119.67014 * 359.73925 * 15 14 13 25 25 C 1.36376 * 119.83323 * 359.97438 * 24 15 14 26 26 C 1.38977 * 119.84144 * 0.25895 * 5 4 3 27 27 C 1.38082 * 119.91860 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47223 * 270.22876 * 1 2 3 29 29 H 1.08997 * 109.47482 * 30.23372 * 1 2 3 30 30 H 1.09002 * 109.46703 * 150.23333 * 1 2 3 31 31 H 1.07999 * 119.96061 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.03553 * 179.76961 * 4 3 2 33 33 H 1.09004 * 109.47244 * 300.00234 * 7 6 5 34 34 H 1.09006 * 109.46965 * 60.00107 * 7 6 5 35 35 H 1.09004 * 109.47181 * 300.00362 * 8 7 6 36 36 H 1.08998 * 109.47044 * 59.99867 * 8 7 6 37 37 H 0.97001 * 119.99594 * 355.71563 * 11 9 8 38 38 H 1.07999 * 119.91513 * 0.02562 * 13 12 11 39 39 H 1.07997 * 120.08509 * 180.25047 * 14 13 12 40 40 H 0.97003 * 119.98736 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.08797 * 179.97438 * 24 15 14 42 42 H 1.07998 * 119.91725 * 179.97438 * 25 24 15 43 43 H 1.07998 * 120.03927 * 180.02562 * 26 5 4 44 44 H 1.07997 * 119.96039 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1988 0.0000 4 6 3.5776 1.2027 -0.0058 5 6 4.2742 0.0001 -0.0009 6 16 6.0362 0.0002 -0.0009 7 6 6.4444 -1.7672 0.0055 8 6 7.9646 -1.9397 0.0054 9 6 8.3037 -3.4080 0.0114 10 8 7.4167 -4.2351 0.0148 11 7 9.5926 -3.8020 0.0119 12 6 9.9069 -5.1550 0.1076 13 6 11.0445 -5.5552 0.8085 14 6 11.3562 -6.8790 0.9107 15 6 10.5317 -7.8423 0.2968 16 6 10.8509 -9.2139 0.3931 17 1 10.6424 -9.8761 -0.4342 18 6 11.4374 -9.7155 1.5601 19 7 11.7696 -8.8998 2.5281 20 14 11.7459 -11.5494 1.7365 21 1 11.2831 -12.2494 0.5114 22 1 13.1989 -11.7908 1.9262 23 1 11.0007 -12.0658 2.9126 24 6 9.3875 -7.4300 -0.4138 25 6 9.0855 -6.1031 -0.5024 26 6 3.5777 -1.2025 0.0043 27 6 2.1969 -1.1987 0.0052 28 1 -0.3633 0.0041 1.0276 29 1 -0.3634 0.8878 -0.5174 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6548 2.1330 0.0004 32 1 4.1156 2.1391 -0.0096 33 1 6.0254 -2.2337 0.8971 34 1 6.0254 -2.2401 -0.8829 35 1 8.3831 -1.4733 -0.8865 36 1 8.3839 -1.4667 0.8935 37 1 10.3012 -3.1429 -0.0543 38 1 11.6778 -4.8152 1.2751 39 1 12.2351 -7.1876 1.4571 40 1 12.1766 -9.2476 3.3370 41 1 8.7510 -8.1628 -0.8874 42 1 8.2088 -5.7854 -1.0472 43 1 4.1158 -2.1389 0.0086 44 1 1.6550 -2.1328 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000555084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = -17.308824 kcal Electronic energy + Delta-G solvation = -24606.558659 eV Core-core repulsion = 20999.355868 eV Total energy + Delta-G solvation = -3607.202791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.26852 -40.11490 -39.13994 -36.22227 -34.76821 -34.13217 -33.71124 -31.96633 -31.49944 -30.74982 -28.03893 -27.31316 -25.54492 -23.64555 -23.22501 -22.57011 -22.39197 -21.11263 -19.29978 -18.66139 -18.44441 -17.94441 -17.04859 -16.92422 -16.63125 -16.29941 -15.81770 -15.71137 -15.35072 -15.21335 -14.78507 -14.57482 -14.52280 -14.47063 -14.01117 -13.84800 -13.64453 -13.42323 -13.29864 -13.19898 -13.05178 -12.88672 -12.79161 -12.49741 -12.45935 -12.30887 -12.01470 -11.78238 -11.40192 -11.25999 -11.23643 -10.82681 -10.60483 -10.46074 -9.99024 -9.48239 -8.74779 -8.52102 -8.36202 -6.34768 0.17940 0.37020 0.39316 0.77344 1.12276 1.32346 1.38627 1.42383 1.53556 1.76215 2.22884 2.38809 2.67100 2.79087 3.53578 3.65872 3.81979 3.82556 3.92716 3.96646 4.01706 4.37631 4.39005 4.41455 4.44431 4.53537 4.61608 4.70645 4.76337 4.78178 4.84745 4.92748 5.06201 5.12839 5.13690 5.18550 5.27577 5.33136 5.34549 5.42342 5.62365 5.68277 5.89234 5.95940 6.00863 6.12439 6.37674 6.65348 6.70498 6.95354 6.98489 7.36062 8.40807 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.001739 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.449916 B =16094.460806 C =17013.176697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.106 4.106 4 C -0.105 4.105 5 C -0.109 4.109 6 S -0.105 6.105 7 C -0.087 4.087 8 C -0.109 4.109 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.020 3.980 13 C -0.119 4.119 14 C -0.158 4.158 15 C 0.066 3.934 16 C -0.498 4.498 17 H 0.072 0.928 18 C 0.027 3.973 19 N -0.841 5.841 20 Si 0.988 3.012 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.270 1.270 24 C -0.221 4.221 25 C -0.098 4.098 26 C -0.145 4.145 27 C -0.114 4.114 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.420 0.580 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.285 0.715 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 21.524 -3.158 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.221 4.221 6 S 0.139 5.861 7 C -0.235 4.235 8 C -0.150 4.150 9 C 0.291 3.709 10 O -0.455 6.455 11 N -0.288 5.288 12 C -0.073 4.073 13 C -0.139 4.139 14 C -0.179 4.179 15 C 0.063 3.937 16 C -0.529 4.529 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.469 5.469 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.195 1.195 24 C -0.242 4.242 25 C -0.118 4.118 26 C -0.169 4.169 27 C -0.134 4.134 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.258 0.742 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.136 0.864 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.252 21.885 -2.924 25.751 hybrid contribution -0.348 -2.050 0.220 2.091 sum -13.600 19.834 -2.704 24.201 Atomic orbital electron populations 1.20840 0.89039 1.03817 1.03183 1.20339 0.97748 0.92747 0.99091 1.21317 0.93247 0.98786 0.99190 1.21004 0.94703 0.96332 1.00770 1.21899 0.96962 0.97039 1.06221 1.85055 0.99358 1.08991 1.92653 1.23273 0.99239 0.94886 1.06150 1.21303 0.94391 0.91114 1.08159 1.21189 0.82140 0.92040 0.75549 1.90691 1.48112 1.55964 1.50715 1.42901 1.08171 1.06002 1.71685 1.17328 0.99933 0.83524 1.06554 1.20587 0.97618 0.96275 0.99381 1.21178 1.01080 0.91641 1.03952 1.18059 0.90207 0.94363 0.91052 1.19753 1.37306 0.94278 1.01532 0.91009 1.26737 0.92168 1.05031 0.94509 1.69831 1.32624 1.38191 1.06276 0.85059 0.78870 0.76095 0.79040 1.18443 1.18641 1.19460 1.20929 0.98973 0.95207 1.09043 1.20524 0.99062 0.92775 0.99430 1.21344 0.95760 0.96748 1.03031 1.21214 0.93318 0.98997 0.99835 0.90295 0.90031 0.91051 0.82899 0.84138 0.89965 0.89616 0.85027 0.85396 0.74183 0.85558 0.86338 0.90465 0.88739 0.87349 0.86429 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 71.23 0.71 -0.39 16 2 C -0.10 -1.53 5.88 -19.83 -0.12 -1.64 16 3 C -0.11 -1.58 9.69 22.25 0.22 -1.36 16 4 C -0.10 -1.85 9.79 22.41 0.22 -1.63 16 5 C -0.11 -2.32 6.11 22.62 0.14 -2.18 16 6 S -0.10 -2.08 21.92 -56.49 -1.24 -3.31 16 7 C -0.09 -1.91 3.62 71.98 0.26 -1.65 16 8 C -0.11 -2.11 5.71 29.85 0.17 -1.94 16 9 C 0.50 15.48 7.66 87.66 0.67 16.15 16 10 O -0.58 -23.35 13.40 -3.03 -0.04 -23.39 16 11 N -0.64 -20.03 5.30 -303.11 -1.61 -21.64 16 12 C 0.02 0.87 6.31 38.57 0.24 1.11 16 13 C -0.12 -5.24 9.90 22.14 0.22 -5.02 16 14 C -0.16 -8.26 8.62 22.48 0.19 -8.06 16 15 C 0.07 3.64 5.55 -21.28 -0.12 3.52 16 16 C -0.50 -27.60 9.02 23.39 0.21 -27.39 16 17 H 0.07 3.87 7.85 -2.91 -0.02 3.84 16 18 C 0.03 1.41 5.42 85.24 0.46 1.87 16 19 N -0.84 -44.58 10.60 21.82 0.23 -44.35 16 20 Si 0.99 39.41 29.56 68.60 2.03 41.44 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 24 C -0.22 -11.62 9.74 22.48 0.22 -11.40 16 25 C -0.10 -4.71 8.61 22.14 0.19 -4.52 16 26 C -0.15 -3.24 9.36 22.41 0.21 -3.03 16 27 C -0.11 -2.18 9.69 22.25 0.22 -1.96 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 30 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.08 2.06 7.70 -2.39 -0.02 2.04 16 34 H 0.09 2.07 7.71 -2.39 -0.02 2.06 16 35 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.42 9.25 8.82 -92.71 -0.82 8.43 16 38 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.12 6.44 6.13 -2.91 -0.02 6.42 16 40 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 41 H 0.09 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.11 5.14 6.22 -2.91 -0.02 5.12 16 43 H 0.12 2.78 5.88 -2.91 -0.02 2.76 16 44 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -69.15 382.30 3.90 -65.25 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.21 Total: 35.53 kcal Atomic # 6 Polarization: -53.84 SS G_CDS: 4.32 Total: -49.52 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -1.38 Total: -65.98 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -1.24 Total: -3.31 kcal Total: -69.15 3.90 -65.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000555084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.940 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds