Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38239 * 119.99792 * 2 1 4 4 C 1.38231 * 119.99863 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.50709 * 119.99374 * 179.97438 * 5 4 3 7 7 S 1.81397 * 109.47237 * 89.99971 * 6 5 4 8 8 C 1.81395 * 103.00232 * 179.97438 * 7 6 5 9 9 C 1.50692 * 109.47245 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00583 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99970 * 179.97438 * 9 8 7 12 12 C 1.39238 * 120.00060 * 175.70723 * 11 9 8 13 13 C 1.39474 * 119.83864 * 215.01922 * 12 11 9 14 14 C 1.36371 * 120.17349 * 179.76556 * 13 12 11 15 15 C 1.40877 * 119.82573 * 0.50642 * 14 13 12 16 16 C 1.41149 * 120.16252 * 179.72184 * 15 14 13 17 17 H 1.07998 * 119.99782 * 214.80570 * 16 15 14 18 18 C 1.39909 * 120.00215 * 34.80390 * 16 15 14 19 19 N 1.30869 * 119.99807 * 355.56370 * 18 16 15 20 20 Si 1.86798 * 120.00115 * 175.55913 * 18 16 15 21 21 H 1.48499 * 109.47434 * 90.00097 * 20 18 16 22 22 H 1.48497 * 109.47113 * 210.00619 * 20 18 16 23 23 H 1.48504 * 109.47003 * 330.00186 * 20 18 16 24 24 C 1.40861 * 119.66892 * 359.74672 * 15 14 13 25 25 C 1.36370 * 119.83489 * 359.97438 * 24 15 14 26 26 C 1.38234 * 120.00416 * 0.24581 * 5 4 3 27 27 C 1.38230 * 119.99493 * 359.47973 * 26 5 4 28 28 H 1.08992 * 109.47354 * 90.00009 * 1 2 3 29 29 H 1.09004 * 109.47015 * 210.00103 * 1 2 3 30 30 H 1.09000 * 109.46910 * 329.99370 * 1 2 3 31 31 H 1.08003 * 119.99912 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99907 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47253 * 329.99662 * 6 5 4 34 34 H 1.09005 * 109.46360 * 209.99231 * 6 5 4 35 35 H 1.09000 * 109.46811 * 300.00221 * 8 7 6 36 36 H 1.09004 * 109.47011 * 59.99466 * 8 7 6 37 37 H 0.96995 * 119.99731 * 355.71867 * 11 9 8 38 38 H 1.08004 * 119.90975 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.08989 * 180.25091 * 14 13 12 40 40 H 0.96999 * 120.00213 * 179.97438 * 19 18 16 41 41 H 1.08012 * 120.08494 * 179.97438 * 24 15 14 42 42 H 1.08004 * 119.92172 * 179.97438 * 25 24 15 43 43 H 1.08000 * 120.00006 * 179.72882 * 26 5 4 44 44 H 1.07997 * 119.99769 * 180.27143 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0016 6 6 5.7787 0.0002 -0.0028 7 16 6.3847 -0.0006 1.7070 8 6 8.1870 -0.0011 1.5012 9 6 8.8473 -0.0011 2.8557 10 8 8.1689 -0.0012 3.8611 11 7 10.1918 -0.0020 2.9501 12 6 10.8022 0.0883 4.1982 13 6 12.0011 0.7877 4.3355 14 6 12.6023 0.8845 5.5557 15 6 12.0149 0.2666 6.6772 16 6 12.6342 0.3573 7.9424 17 1 12.5793 -0.4727 8.6312 18 6 13.3193 1.5223 8.3040 19 7 13.4605 2.4937 7.4385 20 14 14.0322 1.6913 10.0223 21 1 15.4217 1.1675 10.0356 22 1 14.0391 3.1229 10.4168 23 1 13.2025 0.9178 10.9808 24 6 10.8068 -0.4425 6.5296 25 6 10.2144 -0.5258 5.3042 26 6 3.5805 -1.1971 -0.0073 27 6 2.1982 -1.1971 -0.0010 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1325 -0.0010 33 1 6.1416 0.8903 -0.5165 34 1 6.1416 -0.8897 -0.5172 35 1 8.4893 -0.8910 0.9491 36 1 8.4900 0.8889 0.9496 37 1 10.7341 -0.0654 2.1484 38 1 12.4522 1.2574 3.4739 39 1 13.5285 1.4298 5.6612 40 1 13.9351 3.3016 7.6893 41 1 10.3508 -0.9192 7.3849 42 1 9.2882 -1.0695 5.1894 43 1 4.1206 -2.1324 -0.0125 44 1 1.6583 -2.1324 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000618957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = 3.697267 kcal Electronic energy + Delta-G solvation = -24411.742657 eV Core-core repulsion = 20805.450758 eV Total energy + Delta-G solvation = -3606.291899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.71015 -39.61099 -37.25803 -34.47718 -34.17419 -32.98152 -31.19659 -30.49606 -29.63077 -29.54284 -28.40852 -25.33371 -24.75560 -22.99998 -21.77121 -21.17445 -20.82540 -19.72278 -17.43604 -17.21805 -16.47612 -16.37528 -15.90939 -15.81322 -15.37945 -15.34426 -15.16196 -14.22300 -13.97655 -13.78943 -13.72756 -13.71944 -13.52377 -13.15934 -12.97562 -12.64561 -12.56687 -12.32818 -12.11215 -12.00580 -11.69876 -11.43535 -11.33538 -11.23784 -11.15612 -10.99137 -10.73066 -10.10481 -10.05629 -9.51895 -9.46633 -9.18058 -9.17380 -8.90659 -8.71445 -7.69690 -7.55915 -6.88354 -6.62567 -4.35117 0.72449 1.15736 1.65340 2.44870 2.50577 2.98727 3.07983 3.10026 3.14048 3.29774 3.54317 3.67364 3.97974 4.35132 4.44666 4.63751 4.68762 4.74626 4.75165 4.92730 4.94076 5.12327 5.14022 5.15718 5.23531 5.25743 5.44474 5.48350 5.64562 5.79969 5.80474 6.12569 6.17246 6.30321 6.31986 6.43704 6.72161 6.72432 6.89099 7.05658 7.18673 7.28325 7.62863 7.70979 7.84149 8.05143 8.21696 8.30456 8.59885 8.68972 8.92055 8.98527 10.28530 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.001656 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.108606 B =16905.925316 C =17308.776832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.097 4.097 5 C -0.075 4.075 6 C -0.071 4.071 7 S -0.164 6.164 8 C -0.131 4.131 9 C 0.514 3.486 10 O -0.509 6.509 11 N -0.647 5.647 12 C 0.001 3.999 13 C -0.119 4.119 14 C -0.141 4.141 15 C 0.100 3.900 16 C -0.460 4.460 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.811 5.811 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.205 4.205 25 C -0.085 4.085 26 C -0.097 4.097 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.396 0.604 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.278 0.722 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.315 -3.296 -19.032 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.076 4.076 6 C -0.218 4.218 7 S 0.064 5.936 8 C -0.282 4.282 9 C 0.298 3.702 10 O -0.384 6.384 11 N -0.291 5.291 12 C -0.091 4.091 13 C -0.140 4.140 14 C -0.161 4.161 15 C 0.098 3.902 16 C -0.491 4.491 17 H 0.094 0.906 18 C -0.146 4.146 19 N -0.439 5.439 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.225 4.225 25 C -0.104 4.104 26 C -0.117 4.117 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.230 0.770 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.142 0.858 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.231 -3.043 -17.372 24.657 hybrid contribution 1.441 0.294 -0.888 1.717 sum -15.790 -2.750 -18.260 24.297 Atomic orbital electron populations 1.20805 0.91189 1.02927 1.02260 1.19973 0.96143 0.93262 0.99162 1.21016 0.94001 0.97647 1.01242 1.21046 0.94233 0.97540 0.98825 1.19149 0.92781 0.93857 1.01829 1.22438 0.95309 1.05550 0.98526 1.87932 1.00524 1.97968 1.07130 1.23551 0.97474 1.06668 1.00525 1.19573 0.82840 0.78296 0.89480 1.90744 1.62847 1.47960 1.36894 1.42864 1.05353 1.72123 1.08713 1.17250 0.98190 1.09265 0.84376 1.20302 0.95945 0.99927 0.97786 1.21188 1.01351 1.03354 0.90247 1.17739 0.89723 0.89707 0.93069 1.19508 1.28785 1.00538 1.00271 0.90571 1.25885 0.93991 0.95367 0.99317 1.69757 1.33369 1.05684 1.35062 0.86188 0.79633 0.78140 0.81973 1.19520 1.20292 1.18702 1.20811 0.97289 1.08536 0.95839 1.20411 0.98964 0.98672 0.92395 1.21035 0.94224 0.97496 0.98920 1.21008 0.93997 0.97633 1.01291 0.91188 0.91476 0.91470 0.85912 0.85724 0.89285 0.89307 0.87588 0.87500 0.77050 0.89080 0.85001 0.91126 0.88528 0.87421 0.85751 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.32 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 5 C -0.07 -0.73 5.14 -104.62 -0.54 -1.27 16 6 C -0.07 -0.65 6.07 36.01 0.22 -0.43 16 7 S -0.16 -2.20 20.86 -107.50 -2.24 -4.44 16 8 C -0.13 -1.56 6.42 36.00 0.23 -1.33 16 9 C 0.51 8.92 7.68 -10.99 -0.08 8.83 16 10 O -0.51 -11.24 13.28 5.55 0.07 -11.17 16 11 N -0.65 -11.14 5.30 -9.74 -0.05 -11.19 16 12 C 0.00 0.03 6.31 -83.57 -0.53 -0.50 16 13 C -0.12 -2.71 9.90 -39.79 -0.39 -3.10 16 14 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 15 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 16 C -0.46 -12.35 9.02 -37.85 -0.34 -12.69 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 18 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 19 N -0.81 -21.17 10.60 55.55 0.59 -20.58 16 20 Si 0.92 19.09 29.56 -169.99 -5.03 14.07 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 C -0.20 -5.25 9.74 -39.26 -0.38 -5.63 16 25 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 26 C -0.10 -0.90 9.70 -39.59 -0.38 -1.28 16 27 C -0.12 -1.04 9.70 -39.59 -0.38 -1.42 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.09 0.67 8.08 -51.92 -0.42 0.25 16 35 H 0.11 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.11 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.40 5.13 8.82 -40.82 -0.36 4.77 16 38 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 39 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 40 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 41 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 42 H 0.11 2.60 6.22 -52.48 -0.33 2.27 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -32.06 386.53 -11.85 -43.91 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.04 Total: 9.35 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -4.98 Total: -25.77 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.54 Total: -31.77 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.24 Total: -4.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.06 -11.85 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000618957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.608 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds