Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38239 * 119.99792 * 2 1 4 4 C 1.38231 * 119.99863 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.50709 * 119.99374 * 179.97438 * 5 4 3 7 7 S 1.81397 * 109.47237 * 89.99971 * 6 5 4 8 8 C 1.81395 * 103.00232 * 179.97438 * 7 6 5 9 9 C 1.50692 * 109.47245 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00583 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99970 * 179.97438 * 9 8 7 12 12 C 1.39238 * 120.00060 * 175.70723 * 11 9 8 13 13 C 1.39474 * 119.83864 * 215.01922 * 12 11 9 14 14 C 1.36371 * 120.17349 * 179.76556 * 13 12 11 15 15 C 1.40877 * 119.82573 * 0.50642 * 14 13 12 16 16 C 1.41149 * 120.16252 * 179.72184 * 15 14 13 17 17 H 1.07998 * 119.99782 * 214.80570 * 16 15 14 18 18 C 1.39909 * 120.00215 * 34.80390 * 16 15 14 19 19 N 1.30869 * 119.99807 * 355.56370 * 18 16 15 20 20 Si 1.86798 * 120.00115 * 175.55913 * 18 16 15 21 21 H 1.48499 * 109.47434 * 90.00097 * 20 18 16 22 22 H 1.48497 * 109.47113 * 210.00619 * 20 18 16 23 23 H 1.48504 * 109.47003 * 330.00186 * 20 18 16 24 24 C 1.40861 * 119.66892 * 359.74672 * 15 14 13 25 25 C 1.36370 * 119.83489 * 359.97438 * 24 15 14 26 26 C 1.38234 * 120.00416 * 0.24581 * 5 4 3 27 27 C 1.38230 * 119.99493 * 359.47973 * 26 5 4 28 28 H 1.08992 * 109.47354 * 90.00009 * 1 2 3 29 29 H 1.09004 * 109.47015 * 210.00103 * 1 2 3 30 30 H 1.09000 * 109.46910 * 329.99370 * 1 2 3 31 31 H 1.08003 * 119.99912 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99907 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47253 * 329.99662 * 6 5 4 34 34 H 1.09005 * 109.46360 * 209.99231 * 6 5 4 35 35 H 1.09000 * 109.46811 * 300.00221 * 8 7 6 36 36 H 1.09004 * 109.47011 * 59.99466 * 8 7 6 37 37 H 0.96995 * 119.99731 * 355.71867 * 11 9 8 38 38 H 1.08004 * 119.90975 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.08989 * 180.25091 * 14 13 12 40 40 H 0.96999 * 120.00213 * 179.97438 * 19 18 16 41 41 H 1.08012 * 120.08494 * 179.97438 * 24 15 14 42 42 H 1.08004 * 119.92172 * 179.97438 * 25 24 15 43 43 H 1.08000 * 120.00006 * 179.72882 * 26 5 4 44 44 H 1.07997 * 119.99769 * 180.27143 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0016 6 6 5.7787 0.0002 -0.0028 7 16 6.3847 -0.0006 1.7070 8 6 8.1870 -0.0011 1.5012 9 6 8.8473 -0.0011 2.8557 10 8 8.1689 -0.0012 3.8611 11 7 10.1918 -0.0020 2.9501 12 6 10.8022 0.0883 4.1982 13 6 12.0011 0.7877 4.3355 14 6 12.6023 0.8845 5.5557 15 6 12.0149 0.2666 6.6772 16 6 12.6342 0.3573 7.9424 17 1 12.5793 -0.4727 8.6312 18 6 13.3193 1.5223 8.3040 19 7 13.4605 2.4937 7.4385 20 14 14.0322 1.6913 10.0223 21 1 15.4217 1.1675 10.0356 22 1 14.0391 3.1229 10.4168 23 1 13.2025 0.9178 10.9808 24 6 10.8068 -0.4425 6.5296 25 6 10.2144 -0.5258 5.3042 26 6 3.5805 -1.1971 -0.0073 27 6 2.1982 -1.1971 -0.0010 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1325 -0.0010 33 1 6.1416 0.8903 -0.5165 34 1 6.1416 -0.8897 -0.5172 35 1 8.4893 -0.8910 0.9491 36 1 8.4900 0.8889 0.9496 37 1 10.7341 -0.0654 2.1484 38 1 12.4522 1.2574 3.4739 39 1 13.5285 1.4298 5.6612 40 1 13.9351 3.3016 7.6893 41 1 10.3508 -0.9192 7.3849 42 1 9.2882 -1.0695 5.1894 43 1 4.1206 -2.1324 -0.0125 44 1 1.6583 -2.1324 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000618957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -12.252289 kcal Electronic energy + Delta-G solvation = -24412.434281 eV Core-core repulsion = 20805.450758 eV Total energy + Delta-G solvation = -3606.983524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20588 -40.29235 -39.06654 -36.19403 -34.81596 -34.74141 -31.86643 -31.83330 -31.44158 -30.35142 -29.95218 -26.68537 -25.85386 -23.64194 -23.51831 -22.71584 -21.81427 -21.27020 -19.29540 -18.64278 -17.96147 -17.37608 -17.03726 -16.73540 -16.63926 -16.40652 -16.00548 -15.73239 -15.19735 -15.11356 -14.88764 -14.48926 -14.38428 -14.33519 -14.19190 -14.00002 -13.69193 -13.57862 -13.47894 -13.23289 -12.89368 -12.84351 -12.76397 -12.63048 -12.48014 -12.03886 -11.84500 -11.81461 -11.41443 -11.23270 -10.96342 -10.87902 -10.64198 -9.83789 -9.48585 -9.37576 -8.78064 -8.66034 -8.51742 -6.34644 -0.04089 0.50113 0.75266 0.84845 1.12107 1.39113 1.43077 1.52862 1.62577 1.72693 2.23221 2.32138 2.79204 2.89995 3.62984 3.68328 3.79585 3.83938 4.08428 4.09381 4.14187 4.17704 4.25867 4.38351 4.51582 4.52256 4.59274 4.60873 4.84124 4.85986 4.91800 4.96160 5.11769 5.13002 5.18181 5.27968 5.31854 5.41426 5.48335 5.63390 5.68019 5.70068 5.88410 5.99941 6.10207 6.11836 6.37616 6.63196 6.67715 6.95355 6.98033 7.32752 8.41007 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.001656 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.108606 B =16905.925316 C =17308.776832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.045 4.045 7 S -0.246 6.246 8 C -0.107 4.107 9 C 0.510 3.490 10 O -0.560 6.560 11 N -0.638 5.638 12 C 0.020 3.980 13 C -0.116 4.116 14 C -0.158 4.158 15 C 0.067 3.933 16 C -0.498 4.498 17 H 0.072 0.928 18 C 0.028 3.972 19 N -0.840 5.840 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.264 1.264 24 C -0.222 4.222 25 C -0.098 4.098 26 C -0.108 4.108 27 C -0.133 4.133 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.421 0.579 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.285 0.715 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 -3.047 -21.358 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.129 4.129 5 C -0.095 4.095 6 C -0.192 4.192 7 S -0.018 6.018 8 C -0.258 4.258 9 C 0.297 3.703 10 O -0.438 6.438 11 N -0.284 5.284 12 C -0.074 4.074 13 C -0.136 4.136 14 C -0.178 4.178 15 C 0.065 3.935 16 C -0.529 4.529 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.468 5.468 20 Si 0.809 3.191 21 H -0.183 1.183 22 H -0.194 1.194 23 H -0.188 1.188 24 C -0.242 4.242 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.151 4.151 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.259 0.741 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.151 0.849 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.563 -2.806 -19.761 26.587 hybrid contribution 1.365 0.182 -0.345 1.420 sum -16.198 -2.624 -20.106 25.952 Atomic orbital electron populations 1.20849 0.89516 1.03526 1.03178 1.20330 0.97546 0.93124 0.98253 1.21297 0.94061 0.98582 1.01193 1.21265 0.94803 0.97877 0.98927 1.19328 0.93315 0.94157 1.02675 1.22406 0.94641 1.07317 0.94869 1.88280 1.02839 1.98273 1.12371 1.23415 0.95303 1.10004 0.97030 1.20499 0.82343 0.76251 0.91167 1.90736 1.63931 1.49786 1.39389 1.42758 1.05908 1.71903 1.07814 1.17293 0.97470 1.06759 0.85860 1.20569 0.95845 0.99255 0.97944 1.21181 1.01441 1.03962 0.91257 1.18051 0.90547 0.90973 0.93956 1.19729 1.30880 1.01564 1.00742 0.91002 1.26733 0.93815 0.94440 1.03390 1.69814 1.33889 1.06200 1.36919 0.85103 0.79058 0.78344 0.76560 1.18265 1.19357 1.18814 1.20919 0.97499 1.09121 0.96650 1.20515 0.98995 0.99393 0.92871 1.21267 0.94774 0.97846 0.98854 1.21301 0.94077 0.98561 1.01140 0.90016 0.90852 0.90929 0.84453 0.85094 0.87566 0.87364 0.83857 0.84216 0.74101 0.85397 0.86206 0.90421 0.88830 0.87664 0.84895 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.24 0.71 -0.43 16 2 C -0.09 -1.42 5.88 -19.86 -0.12 -1.53 16 3 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 4 C -0.11 -1.93 9.70 22.27 0.22 -1.72 16 5 C -0.09 -1.69 5.14 -19.86 -0.10 -1.80 16 6 C -0.05 -0.71 6.07 71.24 0.43 -0.28 16 7 S -0.25 -6.24 20.86 -56.49 -1.18 -7.42 16 8 C -0.11 -2.19 6.42 71.23 0.46 -1.73 16 9 C 0.51 16.73 7.68 87.65 0.67 17.40 16 10 O -0.56 -24.70 13.28 -3.04 -0.04 -24.74 16 11 N -0.64 -20.35 5.30 -303.10 -1.61 -21.95 16 12 C 0.02 0.86 6.31 38.57 0.24 1.11 16 13 C -0.12 -5.15 9.90 22.13 0.22 -4.93 16 14 C -0.16 -8.28 8.62 22.48 0.19 -8.09 16 15 C 0.07 3.76 5.55 -21.28 -0.12 3.64 16 16 C -0.50 -27.81 9.02 23.39 0.21 -27.60 16 17 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 18 C 0.03 1.46 5.42 85.24 0.46 1.92 16 19 N -0.84 -44.64 10.60 21.82 0.23 -44.41 16 20 Si 0.99 39.57 29.56 68.60 2.03 41.60 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 22 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 C -0.22 -11.85 9.74 22.48 0.22 -11.63 16 25 C -0.10 -4.82 8.61 22.14 0.19 -4.63 16 26 C -0.11 -1.87 9.70 22.27 0.22 -1.65 16 27 C -0.13 -2.12 9.70 22.27 0.22 -1.90 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.64 8.09 -2.38 -0.02 0.63 16 30 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 31 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.11 1.30 8.09 -2.39 -0.02 1.28 16 34 H 0.11 1.28 8.08 -2.39 -0.02 1.26 16 35 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.42 9.24 8.82 -92.71 -0.82 8.43 16 38 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 39 H 0.12 6.51 6.13 -2.91 -0.02 6.49 16 40 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 41 H 0.09 4.85 8.06 -2.90 -0.02 4.83 16 42 H 0.11 5.21 6.22 -2.91 -0.02 5.19 16 43 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -73.46 386.53 4.17 -69.29 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.20 Total: 33.46 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 4.54 Total: -45.82 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.38 Total: -66.36 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.04 Total: -24.74 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: -6.24 SS G_CDS: -1.18 Total: -7.42 kcal Total: -73.46 4.17 -69.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000618957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.036 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds