Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 N 1.46500 * 109.47208 * 120.00534 * 2 1 3 5 5 C 1.46504 * 119.99800 * 299.99755 * 4 2 1 6 6 C 1.50707 * 109.46907 * 275.00244 * 5 4 2 7 7 H 1.07998 * 120.00209 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99654 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99806 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00001 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47063 * 90.00030 * 10 8 6 12 12 H 1.48498 * 109.46749 * 210.00412 * 10 8 6 13 13 H 1.48503 * 109.47136 * 329.99775 * 10 8 6 14 14 S 1.65597 * 120.00109 * 120.00257 * 4 2 1 15 15 O 1.42102 * 106.40137 * 156.46017 * 14 4 2 16 16 O 1.42095 * 106.40348 * 23.53694 * 14 4 2 17 17 C 1.76199 * 107.21739 * 269.99452 * 14 4 2 18 18 C 1.35510 * 120.04919 * 115.02173 * 17 14 4 19 19 C 1.39490 * 121.58073 * 179.70857 * 18 17 14 20 20 C 1.35508 * 121.58505 * 0.56786 * 19 18 17 21 21 C 1.41763 * 119.89801 * 359.43859 * 20 19 18 22 22 N 1.32331 * 131.00774 * 180.27318 * 21 20 19 23 23 S 1.55542 * 109.42052 * 180.02562 * 22 21 20 24 24 N 1.55537 * 100.20494 * 0.02562 * 23 22 21 25 25 C 1.32334 * 109.42132 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47014 * 299.99785 * 1 2 3 27 27 H 1.08995 * 109.47199 * 60.00073 * 1 2 3 28 28 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47026 * 240.00407 * 2 1 3 30 30 H 1.08996 * 109.46868 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47094 * 299.99991 * 3 2 1 32 32 H 1.08997 * 109.47071 * 60.00249 * 3 2 1 33 33 H 1.09003 * 109.47114 * 34.99853 * 5 4 2 34 34 H 1.08995 * 109.46832 * 155.00228 * 5 4 2 35 35 H 0.97000 * 119.99805 * 180.02562 * 9 8 6 36 36 H 1.08001 * 119.20635 * 359.97438 * 18 17 14 37 37 H 1.08000 * 119.21394 * 180.31519 * 19 18 17 38 38 H 1.08002 * 120.05502 * 179.72124 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6644 -0.1902 2.5268 6 6 2.6339 0.8904 2.9312 7 1 3.4334 1.1762 2.2636 8 6 2.4995 1.5151 4.1530 9 7 3.3452 2.4584 4.5057 10 14 1.1154 1.0223 5.3067 11 1 1.5789 -0.0724 6.1966 12 1 0.7158 2.1928 6.1285 13 1 -0.0487 0.5549 4.5120 14 16 2.9705 -2.0371 1.0441 15 8 3.7119 -2.1427 2.2517 16 8 3.5794 -1.9553 -0.2372 17 6 1.8962 -3.4329 0.9962 18 6 1.8185 -4.1912 -0.1241 19 6 0.9835 -5.3063 -0.1949 20 6 0.2030 -5.6761 0.8493 21 6 0.2334 -4.9288 2.0536 22 7 -0.4202 -5.0908 3.1928 23 16 -0.0045 -3.9728 4.1911 24 7 1.0145 -3.1877 3.3168 25 6 1.1107 -3.7633 2.1291 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.6540 0.2179 2.5045 34 1 1.7105 -1.0076 3.2464 35 1 3.2508 2.8976 5.3655 36 1 2.4207 -3.9283 -0.9813 37 1 0.9552 -5.8867 -1.1053 38 1 -0.4377 -6.5415 0.7659 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002230355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = 17.913806 kcal Electronic energy + Delta-G solvation = -26588.282189 eV Core-core repulsion = 22878.677279 eV Total energy + Delta-G solvation = -3709.604910 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01009 -37.02250 -36.93012 -36.35329 -35.20308 -34.04978 -32.61474 -30.81896 -30.62332 -27.76412 -27.37953 -26.62116 -22.81743 -22.71789 -22.35015 -20.34892 -19.76608 -18.26251 -17.62518 -17.38249 -16.88241 -16.52532 -15.95065 -15.85147 -15.30960 -15.11521 -14.23138 -13.81104 -13.63419 -13.10651 -12.93005 -12.68477 -12.60025 -12.35161 -12.09366 -12.02231 -11.93173 -11.74843 -11.59515 -11.56261 -11.37067 -11.25946 -11.06353 -10.91882 -10.89085 -10.82680 -10.37483 -10.31889 -10.13619 -9.97519 -9.34814 -8.94770 -8.90494 -8.49672 -8.05481 -6.00614 -3.96296 -0.46158 0.90463 1.17960 1.33143 1.40193 1.64462 3.07619 3.29671 3.34799 3.36210 3.57935 4.04281 4.21906 4.44723 4.52650 4.62866 4.80166 4.90205 5.12308 5.25451 5.33608 5.34571 5.56648 5.59942 5.69761 5.84536 5.90446 5.94505 5.98208 6.15569 6.23728 6.42112 6.54915 6.61318 6.74376 6.98943 7.15871 7.29150 7.52253 7.68991 8.57908 9.05600 9.59694 11.12877 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.006518 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.616686 B = 4294.493986 C = 5667.261868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.152 4.152 4 N -0.965 5.965 5 C 0.219 3.781 6 C -0.519 4.519 7 H 0.082 0.918 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.863 3.137 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.266 1.266 14 S 2.684 3.316 15 O -0.924 6.924 16 O -0.971 6.971 17 C -0.626 4.626 18 C 0.022 3.978 19 C -0.124 4.124 20 C -0.014 4.014 21 C 0.060 3.940 22 N -0.594 5.594 23 S 0.814 5.186 24 N -0.575 5.575 25 C 0.143 3.857 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.263 0.737 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -14.993 -8.665 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 C -0.210 4.210 4 N -0.805 5.805 5 C 0.096 3.904 6 C -0.558 4.558 7 H 0.100 0.900 8 C -0.128 4.128 9 N -0.536 5.536 10 Si 0.690 3.310 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.191 1.191 14 S 2.771 3.229 15 O -0.914 6.914 16 O -0.962 6.962 17 C -0.715 4.715 18 C -0.004 4.004 19 C -0.149 4.149 20 C -0.039 4.039 21 C -0.100 4.100 22 N -0.445 5.445 23 S 0.862 5.138 24 N -0.425 5.425 25 C -0.017 4.017 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.773 -14.538 -6.329 18.625 hybrid contribution -0.870 -0.874 -0.828 1.485 sum -10.643 -15.411 -7.157 20.050 Atomic orbital electron populations 1.22172 0.96187 1.01236 1.02399 1.20740 0.93563 0.95124 0.86477 1.22114 1.01844 0.94875 1.02214 1.57271 1.70111 1.39769 1.13340 1.19647 0.96687 0.96263 0.77835 1.21432 1.13691 1.17742 1.02960 0.90033 1.24800 0.95802 0.94867 0.97376 1.69886 1.36635 1.25216 1.21909 0.87049 0.83395 0.78598 0.81983 1.19700 1.21190 1.19118 1.02435 0.74043 0.72842 0.73613 1.93632 1.66745 1.85521 1.45521 1.93507 1.73501 1.86710 1.42449 1.30859 1.19148 1.24419 0.97028 1.20861 0.92845 0.91034 0.95642 1.20919 0.96903 0.97730 0.99374 1.20511 0.97383 0.97502 0.88506 1.21303 0.97022 0.97836 0.93823 1.72183 1.31201 1.31900 1.09238 1.78731 1.15609 0.99530 1.19957 1.72423 1.25681 1.34342 1.10063 1.20246 0.97740 0.93075 0.90635 0.91561 0.92072 0.93472 0.89724 0.92329 0.93440 0.89665 0.95297 0.92861 0.92733 0.82532 0.83533 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.16 37.16 0.34 -2.02 16 2 C 0.15 2.55 3.24 -67.93 -0.22 2.33 16 3 C -0.15 -2.75 8.21 37.16 0.30 -2.45 16 4 N -0.97 -19.88 2.73 -108.56 -0.30 -20.18 16 5 C 0.22 5.19 3.74 -5.19 -0.02 5.17 16 6 C -0.52 -14.51 8.08 -34.43 -0.28 -14.79 16 7 H 0.08 2.47 7.32 -52.49 -0.38 2.09 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 10 Si 0.86 21.18 27.47 -169.99 -4.67 16.51 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 14 S 2.68 54.20 5.55 -107.50 -0.60 53.60 16 15 O -0.92 -22.59 16.92 -57.17 -0.97 -23.55 16 16 O -0.97 -19.16 15.47 -57.17 -0.88 -20.05 16 17 C -0.63 -10.19 5.93 -39.21 -0.23 -10.42 16 18 C 0.02 0.27 9.43 -40.09 -0.38 -0.11 16 19 C -0.12 -1.12 9.89 -40.09 -0.40 -1.52 16 20 C -0.01 -0.14 10.09 -39.21 -0.40 -0.54 16 21 C 0.06 0.84 7.16 -83.17 -0.60 0.25 16 22 N -0.59 -8.19 11.44 25.63 0.29 -7.90 16 23 S 0.81 11.06 23.60 -107.50 -2.54 8.52 16 24 N -0.58 -10.43 9.49 25.63 0.24 -10.19 16 25 C 0.14 2.41 6.86 -83.17 -0.57 1.84 16 26 H 0.07 1.06 6.69 -51.93 -0.35 0.72 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.31 6.91 -51.93 -0.36 0.95 16 30 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.76 6.65 -51.93 -0.35 1.42 16 33 H 0.03 0.66 5.50 -51.93 -0.29 0.38 16 34 H 0.05 1.31 5.04 -51.93 -0.26 1.05 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.16 1.58 7.22 -52.49 -0.38 1.20 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -35.89 336.76 -10.16 -46.06 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.05 Total: -0.97 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.54 Total: -20.24 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 1.01 Total: -64.95 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.85 Total: -43.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: 65.26 SS G_CDS: -3.13 Total: 62.12 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.89 -10.16 -46.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002230355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.969 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds