Wall clock time and date at job start Tue Mar 31 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48506 * 109.47256 * 239.99846 * 3 2 1 5 5 H 1.48503 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47712 * 119.99452 * 3 2 1 7 7 C 1.37878 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00439 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99684 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00570 * 270.00190 * 10 9 7 12 12 C 1.50697 * 109.47017 * 269.99970 * 11 10 9 13 13 C 1.38231 * 120.00357 * 269.72759 * 12 11 10 14 14 C 1.38235 * 120.00473 * 179.77056 * 13 12 11 15 15 C 1.38238 * 119.99494 * 0.49899 * 14 13 12 16 16 C 1.38229 * 120.00339 * 359.74847 * 15 14 13 17 17 C 1.38235 * 119.99946 * 0.02562 * 16 15 14 18 18 C 1.34786 * 119.99466 * 90.00195 * 10 9 7 19 19 S 1.71196 * 119.99592 * 179.97438 * 18 10 9 20 20 N 1.34773 * 119.99988 * 359.97438 * 18 10 9 21 21 C 1.46497 * 119.99546 * 180.02562 * 20 18 10 22 22 C 1.50707 * 109.47012 * 180.02562 * 21 20 18 23 23 C 1.38238 * 119.99792 * 90.00154 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.98090 * 22 21 20 28 28 H 0.96995 * 120.00079 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47348 * 59.99647 * 9 7 2 30 30 H 1.08999 * 109.47185 * 299.99670 * 9 7 2 31 31 H 1.09005 * 109.46942 * 29.99788 * 11 10 9 32 32 H 1.09004 * 109.47361 * 150.00004 * 11 10 9 33 33 H 1.08007 * 119.99620 * 359.97438 * 13 12 11 34 34 H 1.07998 * 120.00281 * 180.22847 * 14 13 12 35 35 H 1.08002 * 119.99900 * 179.72775 * 15 14 13 36 36 H 1.08001 * 120.00498 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.00342 * 179.97438 * 17 16 15 38 38 H 0.96998 * 120.00430 * 0.02562 * 20 18 10 39 39 H 1.09005 * 109.47643 * 60.00506 * 21 20 18 40 40 H 1.09000 * 109.47513 * 299.99670 * 21 20 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 45 45 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6792 -4.1695 -1.2681 12 6 1.7626 -5.2837 -1.7031 13 6 2.0189 -6.5835 -1.3087 14 6 1.1755 -7.6049 -1.7038 15 6 0.0813 -7.3279 -2.5020 16 6 -0.1722 -6.0289 -2.9007 17 6 0.6686 -5.0068 -2.5017 18 6 2.6410 -4.1248 1.1679 19 16 3.7530 -5.4265 1.1679 20 7 2.2034 -3.6122 2.3350 21 6 2.6797 -4.1686 3.6037 22 6 2.0432 -3.4243 4.7491 23 6 0.8416 -3.8614 5.2747 24 6 0.2580 -3.1790 6.3257 25 6 0.8762 -2.0599 6.8516 26 6 2.0750 -1.6198 6.3225 27 6 2.6610 -2.3049 5.2745 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6870 -3.3878 -2.0278 32 1 3.6887 -4.5595 -1.1377 33 1 2.8765 -6.8005 -0.6890 34 1 1.3737 -8.6199 -1.3925 35 1 -0.5753 -8.1265 -2.8143 36 1 -1.0268 -5.8125 -3.5246 37 1 0.4708 -3.9919 -2.8135 38 1 1.5730 -2.8750 2.3350 39 1 3.7635 -4.0665 3.6612 40 1 2.4105 -5.2233 3.6619 41 1 0.3588 -4.7359 4.8642 42 1 -0.6809 -3.5201 6.7360 43 1 0.4204 -1.5271 7.6730 44 1 2.5559 -0.7430 6.7304 45 1 3.6001 -1.9639 4.8644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002315852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:55 Heat of formation + Delta-G solvation = 62.891700 kcal Electronic energy + Delta-G solvation = -26429.793937 eV Core-core repulsion = 22923.787563 eV Total energy + Delta-G solvation = -3506.006374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.60187 -39.15171 -38.05093 -35.40154 -33.14052 -31.99534 -30.91094 -30.73767 -30.52179 -28.18092 -26.72439 -24.91656 -23.98646 -22.58832 -22.14721 -21.45681 -21.33856 -20.36602 -17.66415 -17.07691 -16.83923 -16.55358 -16.16908 -15.37040 -15.10997 -14.92404 -14.82914 -14.62100 -14.35929 -13.99783 -13.65988 -13.42838 -13.09753 -13.02801 -12.93586 -12.55428 -12.52714 -12.22806 -11.80595 -11.75121 -11.34012 -11.19266 -11.07780 -11.03764 -10.91008 -10.75205 -10.64986 -10.56642 -10.16425 -9.89804 -8.92794 -8.89459 -8.80856 -8.55091 -8.50516 -8.16252 -7.15431 -6.81622 -6.40794 -4.52715 1.21938 1.39766 1.61288 1.79138 2.21404 2.65612 3.11309 3.17001 3.19785 3.32080 3.77116 4.09277 4.16314 4.33783 4.69756 4.85564 4.91746 4.98256 5.10266 5.17036 5.21465 5.31465 5.41311 5.47430 5.50962 5.67563 5.73432 5.80477 5.88244 6.00968 6.04459 6.04912 6.18635 6.29092 6.37027 6.41089 6.48111 6.48258 6.60866 6.71069 6.78226 6.84666 6.89120 6.96783 7.04327 7.21480 7.38918 7.49848 7.63996 7.70656 7.97860 8.55147 9.17102 10.64380 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007618 B = 0.004533 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3674.594875 B = 6176.006211 C = 8458.385609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.071 3.929 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.227 3.773 10 N -0.538 5.538 11 C 0.152 3.848 12 C -0.101 4.101 13 C -0.088 4.088 14 C -0.134 4.134 15 C -0.122 4.122 16 C -0.134 4.134 17 C -0.102 4.102 18 C 0.580 3.420 19 S -0.717 6.717 20 N -0.680 5.680 21 C 0.171 3.829 22 C -0.107 4.107 23 C -0.098 4.098 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.094 4.094 28 H 0.269 0.731 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.151 0.849 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.410 0.590 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -6.504 5.667 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.083 0.917 9 C 0.105 3.895 10 N -0.241 5.241 11 C 0.029 3.971 12 C -0.102 4.102 13 C -0.108 4.108 14 C -0.152 4.152 15 C -0.140 4.140 16 C -0.152 4.152 17 C -0.121 4.121 18 C 0.216 3.784 19 S -0.590 6.590 20 N -0.312 5.312 21 C 0.047 3.953 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.141 4.141 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.251 0.749 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.712 -7.135 5.668 9.141 hybrid contribution -0.761 2.129 -0.023 2.261 sum -1.473 -5.007 5.645 7.688 Atomic orbital electron populations 1.69904 1.06060 1.27939 1.48356 1.24938 0.94893 0.99490 0.94099 0.86479 0.79538 0.82032 0.79086 1.19839 1.20968 1.19943 1.21333 0.93714 0.89767 1.53897 0.91664 1.19714 0.87715 0.82760 0.99262 1.47449 1.41845 1.31742 1.03090 1.20675 0.98557 0.94069 0.83773 1.20175 0.96825 0.95003 0.98241 1.21867 1.00166 0.91770 0.96948 1.21171 0.95752 0.99198 0.99108 1.21107 0.97768 0.96482 0.98689 1.21032 0.99753 0.93075 1.01336 1.21188 0.94220 0.99215 0.97454 1.21811 0.86163 0.88298 0.82089 1.92848 1.42351 1.28718 1.95058 1.45029 1.46102 1.36561 1.03498 1.20395 0.99487 0.97186 0.78195 1.19963 0.96000 0.96935 0.97895 1.21128 0.94608 0.99827 0.96110 1.21131 0.99973 0.96101 0.97045 1.21187 0.95599 0.96627 0.99835 1.21158 0.96089 0.99870 0.96991 1.21169 1.00048 0.94220 0.95797 0.92100 0.93145 0.94881 0.89014 0.87079 0.83114 0.86596 0.86852 0.86604 0.86077 0.74927 0.89274 0.89421 0.85864 0.86023 0.86163 0.85969 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.03 13.29 55.43 0.74 -22.29 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.55 -13.34 9.39 -34.44 -0.32 -13.66 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.23 5.03 4.93 -5.19 -0.03 5.00 16 10 N -0.54 -10.64 2.44 -178.46 -0.44 -11.08 16 11 C 0.15 2.75 5.36 -5.20 -0.03 2.73 16 12 C -0.10 -1.72 5.46 -104.62 -0.57 -2.29 16 13 C -0.09 -1.48 9.27 -39.58 -0.37 -1.84 16 14 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 15 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 16 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 17 C -0.10 -1.64 9.70 -39.58 -0.38 -2.02 16 18 C 0.58 11.39 7.70 -86.91 -0.67 10.72 16 19 S -0.72 -14.71 24.65 -107.50 -2.65 -17.36 16 20 N -0.68 -12.05 5.41 -63.21 -0.34 -12.40 16 21 C 0.17 2.57 5.25 -5.19 -0.03 2.55 16 22 C -0.11 -1.46 5.25 -104.62 -0.55 -2.01 16 23 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 24 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.11 -1.27 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.09 -1.23 9.70 -39.58 -0.38 -1.62 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.05 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.03 0.77 6.37 -51.93 -0.33 0.44 16 31 H 0.09 1.61 8.02 -51.93 -0.42 1.19 16 32 H 0.11 2.06 6.52 -51.93 -0.34 1.72 16 33 H 0.15 2.71 5.84 -52.48 -0.31 2.40 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.41 7.69 6.19 -40.82 -0.25 7.44 16 39 H 0.09 1.39 7.94 -51.93 -0.41 0.97 16 40 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 41 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -27.68 389.61 -14.27 -41.96 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.24 Total: 15.09 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -6.20 Total: -14.48 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.04 Total: -45.76 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: -14.71 SS G_CDS: -2.65 Total: -17.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.68 -14.27 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002315852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.847 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds