Wall clock time and date at job start Tue Mar 31 2020 05:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00517 * 2 1 4 4 C 1.50696 * 109.46814 * 269.99860 * 3 2 1 5 5 H 1.07999 * 120.00580 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99890 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99602 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00208 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47122 * 60.00223 * 8 6 4 10 10 H 1.48504 * 109.47191 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47424 * 300.00255 * 8 6 4 12 12 C 1.34780 * 119.99467 * 180.02562 * 2 1 3 13 13 O 1.21613 * 120.00179 * 174.88531 * 12 2 1 14 14 N 1.34770 * 120.00170 * 354.88053 * 12 2 1 15 15 C 1.40166 * 119.31539 * 156.64287 * 14 12 2 16 16 C 1.38619 * 120.25980 * 37.81639 * 15 14 12 17 17 C 1.38333 * 119.98841 * 179.73952 * 16 15 14 18 18 C 1.38236 * 120.39837 * 359.79013 * 17 16 15 19 19 C 1.38419 * 120.08178 * 0.55417 * 18 17 16 20 20 C 1.38364 * 119.75889 * 359.44824 * 19 18 17 21 21 S 1.76481 * 120.59062 * 180.13369 * 20 19 18 22 22 C 1.76482 * 101.76216 * 151.13094 * 21 20 19 23 23 C 1.38375 * 120.59306 * 208.96651 * 22 21 20 24 24 C 1.38408 * 119.76161 * 180.12141 * 23 22 21 25 25 C 1.38239 * 120.08432 * 0.04168 * 24 23 22 26 26 C 1.38331 * 120.39535 * 359.91528 * 25 24 23 27 27 C 1.38610 * 119.99324 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47118 * 275.52273 * 1 2 3 29 29 H 1.09004 * 109.46300 * 35.51590 * 1 2 3 30 30 H 1.08993 * 109.47793 * 155.51620 * 1 2 3 31 31 H 1.08996 * 109.46893 * 30.00098 * 3 2 1 32 32 H 1.08996 * 109.47192 * 150.00094 * 3 2 1 33 33 H 0.97001 * 119.99804 * 179.97438 * 7 6 4 34 34 H 1.07994 * 120.00339 * 359.76981 * 16 15 14 35 35 H 1.08003 * 119.79848 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.95950 * 180.33257 * 18 17 16 37 37 H 1.07999 * 120.11623 * 179.71815 * 19 18 17 38 38 H 1.07995 * 120.11386 * 0.13767 * 23 22 21 39 39 H 1.07994 * 119.95498 * 180.02562 * 24 23 22 40 40 H 1.07997 * 119.80350 * 179.89163 * 25 24 23 41 41 H 1.07996 * 120.00903 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5536 3.6178 -0.6732 8 14 3.4370 3.4173 -3.4339 9 1 2.1393 3.5947 -4.1336 10 1 4.1798 4.7033 -3.4339 11 1 4.2396 2.3827 -4.1343 12 6 2.1388 -1.1673 -0.0005 13 8 3.3513 -1.1695 -0.0944 14 7 1.4689 -2.3321 0.1031 15 6 2.0600 -3.5088 -0.3771 16 6 3.4215 -3.7196 -0.2235 17 6 3.9981 -4.8854 -0.6947 18 6 3.2238 -5.8473 -1.3160 19 6 1.8646 -5.6437 -1.4809 20 6 1.2826 -4.4795 -1.0115 21 16 -0.4488 -4.1989 -1.2068 22 6 -0.8060 -3.1727 0.1839 23 6 -2.0607 -3.1888 0.7672 24 6 -2.3228 -2.3750 1.8556 25 6 -1.3345 -1.5487 2.3571 26 6 -0.0782 -1.5293 1.7784 27 6 0.1957 -2.3419 0.6894 28 1 -0.3633 0.0989 1.0228 29 1 -0.3632 0.8365 -0.5971 30 1 -0.3634 -0.9351 -0.4259 31 1 1.6086 2.0283 0.5138 32 1 3.1500 1.1382 0.5138 33 1 4.0305 4.4437 -0.8504 34 1 4.0317 -2.9741 0.2644 35 1 5.0591 -5.0466 -0.5730 36 1 3.6805 -6.7572 -1.6765 37 1 1.2599 -6.3928 -1.9703 38 1 -2.8325 -3.8342 0.3746 39 1 -3.3008 -2.3854 2.3135 40 1 -1.5445 -0.9143 3.2055 41 1 0.6894 -0.8817 2.1755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002408632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:36 Heat of formation + Delta-G solvation = 86.216623 kcal Electronic energy + Delta-G solvation = -27460.237955 eV Core-core repulsion = 23819.409932 eV Total energy + Delta-G solvation = -3640.828024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.67213 -39.11445 -38.38640 -35.52614 -35.17528 -32.74056 -31.37656 -31.06310 -30.60217 -29.23909 -27.74804 -25.68188 -24.16757 -23.47123 -23.03278 -22.11473 -21.64538 -19.52356 -18.38736 -17.92173 -17.22491 -16.66562 -16.13056 -15.81090 -15.35780 -15.12465 -14.85966 -14.77053 -14.63114 -13.93989 -13.84221 -13.73181 -13.65326 -13.20635 -12.86586 -12.66071 -12.33261 -12.22699 -11.95511 -11.62776 -11.51525 -11.24713 -11.19100 -11.01905 -10.82933 -10.63657 -10.37411 -10.19195 -10.01924 -9.72732 -9.38170 -9.12294 -8.77559 -8.47724 -8.09768 -7.85387 -7.06398 -6.09416 -4.13913 0.83633 1.05366 1.17154 1.38034 1.54118 2.26472 2.61166 3.30237 3.31751 3.34559 3.39704 3.53004 3.65797 4.18250 4.42523 4.58837 4.78644 4.85747 5.00361 5.11478 5.17747 5.21753 5.24813 5.26923 5.44245 5.51927 5.53616 5.69027 5.78033 5.82701 5.94950 6.03047 6.15695 6.20938 6.21927 6.33539 6.47550 6.51801 6.64341 6.71941 7.06081 7.16251 7.32253 7.44024 7.86673 8.14874 8.28611 8.80937 8.96186 9.51117 10.98687 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.004712 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.517888 B = 5940.568562 C = 7404.725547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.595 5.595 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.698 3.302 13 O -0.549 6.549 14 N -0.532 5.532 15 C 0.174 3.826 16 C -0.107 4.107 17 C -0.096 4.096 18 C -0.127 4.127 19 C -0.076 4.076 20 C -0.137 4.137 21 S 0.006 5.994 22 C -0.140 4.140 23 C -0.073 4.073 24 C -0.124 4.124 25 C -0.100 4.100 26 C -0.110 4.110 27 C 0.164 3.836 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.159 0.841 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.545 -17.157 4.823 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.328 5.328 3 C 0.140 3.860 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.402 3.598 13 O -0.423 6.423 14 N -0.254 5.254 15 C 0.077 3.923 16 C -0.128 4.128 17 C -0.116 4.116 18 C -0.147 4.147 19 C -0.099 4.099 20 C -0.251 4.251 21 S 0.258 5.742 22 C -0.254 4.254 23 C -0.096 4.096 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.133 4.133 27 C 0.066 3.934 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.176 0.824 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.502 -17.248 3.844 20.556 hybrid contribution 1.009 1.018 -0.136 1.440 sum -9.492 -16.230 3.708 19.164 Atomic orbital electron populations 1.23014 0.81511 1.02850 1.01077 1.47671 1.06119 1.06076 1.72967 1.19338 0.92170 0.76512 0.97936 1.21358 1.36797 1.06363 0.92129 0.92498 1.24902 0.95189 0.96229 0.97554 1.69912 1.38257 1.14393 1.30816 0.86539 0.78435 0.77820 0.84554 1.20203 1.21078 1.20137 1.15898 0.85284 0.79516 0.79121 1.90851 1.11260 1.84520 1.55682 1.42550 1.16112 1.06462 1.60251 1.17462 0.92662 0.85191 0.96966 1.21706 0.93151 0.97881 1.00074 1.21215 1.00166 0.92940 0.97301 1.21125 0.93247 0.99743 1.00632 1.20628 0.95267 0.94573 0.99429 1.21728 0.97417 0.99200 1.06760 1.83994 1.01858 1.59300 1.29046 1.21721 0.96823 1.04335 1.02528 1.20659 0.94297 0.99364 0.95297 1.21058 0.99635 0.97058 0.96757 1.21026 0.92039 0.99054 0.99920 1.20902 0.98953 0.99287 0.94110 1.17420 0.84200 0.97916 0.93833 0.90946 0.90968 0.91198 0.94415 0.93637 0.92577 0.82358 0.85169 0.85317 0.84962 0.84875 0.85136 0.84896 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 8.32 59.85 0.50 1.53 16 2 N -0.59 -13.06 2.40 -188.75 -0.45 -13.52 16 3 C 0.26 6.72 5.15 -5.20 -0.03 6.70 16 4 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 7 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.70 15.58 7.22 -86.92 -0.63 14.95 16 13 O -0.55 -13.92 13.27 5.27 0.07 -13.85 16 14 N -0.53 -10.03 2.77 -62.24 -0.17 -10.20 16 15 C 0.17 3.12 5.96 -83.39 -0.50 2.63 16 16 C -0.11 -1.82 8.87 -39.41 -0.35 -2.17 16 17 C -0.10 -1.28 10.03 -39.55 -0.40 -1.68 16 18 C -0.13 -1.48 10.05 -39.52 -0.40 -1.88 16 19 C -0.08 -0.96 9.81 -39.47 -0.39 -1.35 16 20 C -0.14 -2.12 6.00 -39.02 -0.23 -2.36 16 21 S 0.01 0.09 22.09 -107.50 -2.37 -2.29 16 22 C -0.14 -1.97 5.43 -39.02 -0.21 -2.18 16 23 C -0.07 -0.80 9.81 -39.47 -0.39 -1.19 16 24 C -0.12 -1.18 10.05 -39.52 -0.40 -1.58 16 25 C -0.10 -1.06 9.51 -39.55 -0.38 -1.43 16 26 C -0.11 -1.54 5.50 -39.41 -0.22 -1.75 16 27 C 0.16 2.61 3.37 -83.39 -0.28 2.33 16 28 H 0.07 1.09 4.64 -51.95 -0.24 0.85 16 29 H 0.07 1.31 8.11 -51.93 -0.42 0.88 16 30 H 0.07 1.21 4.71 -51.93 -0.24 0.97 16 31 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.05 1.31 7.50 -51.93 -0.39 0.92 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.16 3.02 5.86 -52.49 -0.31 2.71 16 35 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 2.02 6.92 -52.49 -0.36 1.65 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -33.07 344.90 -11.19 -44.26 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.47 Total: 2.05 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.71 Total: -3.14 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.11 Total: -49.30 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.07 Total: -13.85 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.37 Total: -2.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.07 -11.19 -44.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002408632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.478 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds