Wall clock time and date at job start Tue Mar 31 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31663 * 1 3 3 Si 1.86797 * 120.00108 * 2 1 4 4 H 1.48494 * 109.47265 * 270.00424 * 3 2 1 5 5 H 1.48510 * 109.46977 * 30.00430 * 3 2 1 6 6 H 1.48500 * 109.46754 * 150.00088 * 3 2 1 7 7 C 1.38626 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00095 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00459 * 359.97438 * 7 2 1 10 10 C 1.76197 * 100.00429 * 180.02562 * 9 7 2 11 11 N 1.31580 * 126.40341 * 0.05597 * 10 9 7 12 12 N 1.28500 * 110.08954 * 179.97438 * 11 10 9 13 13 C 1.31540 * 110.01435 * 359.97438 * 12 11 10 14 14 C 1.47709 * 126.45392 * 180.02562 * 13 12 11 15 15 C 1.39634 * 120.16306 * 132.70277 * 14 13 12 16 16 C 1.37920 * 119.87500 * 179.72434 * 15 14 13 17 17 C 1.38413 * 120.20098 * 0.57114 * 16 15 14 18 18 C 1.38294 * 120.33246 * 359.70418 * 17 16 15 19 19 C 1.38221 * 120.12028 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.09889 * 180.02562 * 19 18 17 21 21 N 1.37010 * 126.40904 * 179.97438 * 10 9 7 22 22 C 1.40135 * 127.18905 * 0.02562 * 21 10 9 23 23 C 1.38845 * 120.07193 * 112.94858 * 22 21 10 24 24 C 1.38120 * 119.93315 * 179.76606 * 23 22 21 25 25 C 1.38278 * 120.06897 * 0.48676 * 24 23 22 26 26 C 1.38278 * 120.13232 * 359.76242 * 25 24 23 27 27 C 1.38122 * 120.06918 * 0.02562 * 26 25 24 28 28 H 0.97000 * 119.99534 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.06086 * 0.02562 * 15 14 13 30 30 H 1.08000 * 119.89865 * 180.29244 * 16 15 14 31 31 H 1.07997 * 119.83216 * 179.72121 * 17 16 15 32 32 H 1.07994 * 119.94220 * 180.02562 * 18 17 16 33 33 H 1.08010 * 120.03095 * 359.97438 * 23 22 21 34 34 H 1.08009 * 119.96299 * 180.25165 * 24 23 22 35 35 H 1.07993 * 119.93385 * 179.74541 * 25 24 23 36 36 H 1.07999 * 119.96734 * 179.97438 * 26 25 24 37 37 H 1.08000 * 120.03173 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 2.4981 2.0464 -1.4000 5 1 1.4481 2.6527 0.7002 6 1 3.5482 1.4400 0.7000 7 6 2.0097 -1.2006 -0.0005 8 1 3.0897 -1.2007 -0.0001 9 16 1.1287 -2.7266 -0.0005 10 6 2.4784 -3.8592 -0.0005 11 7 3.7573 -3.5500 0.0005 12 7 4.4700 -4.6192 0.0007 13 6 3.6912 -5.6793 0.0003 14 6 4.1291 -7.0900 0.0009 15 6 3.5544 -8.0026 0.8879 16 6 3.9637 -9.3197 0.8795 17 6 4.9503 -9.7366 0.0028 18 6 5.5293 -8.8387 -0.8754 19 6 5.1247 -7.5170 -0.8830 20 9 5.6902 -6.6403 -1.7414 21 7 2.3925 -5.2266 0.0000 22 6 1.2252 -6.0020 0.0001 23 6 0.9051 -6.7776 -1.1062 24 6 -0.2436 -7.5445 -1.1011 25 6 -1.0797 -7.5326 0.0002 26 6 -0.7663 -6.7572 1.1014 27 6 0.3833 -5.9915 1.1040 28 1 -0.4849 0.8401 -0.0004 29 1 2.7875 -7.6788 1.5759 30 1 3.5162 -10.0269 1.5621 31 1 5.2695 -10.7683 0.0044 32 1 6.2983 -9.1709 -1.5570 33 1 1.5555 -6.7838 -1.9685 34 1 -0.4910 -8.1512 -1.9598 35 1 -1.9795 -8.1299 0.0002 36 1 -1.4214 -6.7496 1.9599 37 1 0.6273 -5.3858 1.9643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002622463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:51 Heat of formation + Delta-G solvation = 85.379886 kcal Electronic energy + Delta-G solvation = -26037.682977 eV Core-core repulsion = 22207.932454 eV Total energy + Delta-G solvation = -3829.750523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.76944 -42.22049 -39.13754 -38.86693 -34.46211 -32.69571 -32.34206 -31.07330 -30.73432 -29.53551 -28.81875 -25.74441 -24.12067 -23.11386 -22.89397 -22.70893 -21.41813 -20.53118 -18.63203 -17.75559 -17.31195 -16.48367 -16.39477 -15.94807 -15.81622 -15.47881 -15.21922 -14.96107 -14.57417 -14.35132 -14.28210 -13.88205 -13.53796 -13.19446 -13.08407 -12.82878 -12.45799 -12.09974 -11.94409 -11.43992 -11.40381 -11.34585 -11.15936 -11.09385 -10.71341 -10.35233 -10.15788 -9.99589 -9.88664 -9.28906 -9.07195 -8.98118 -8.89248 -8.74984 -8.53377 -6.81931 -6.50358 -4.25075 0.77288 1.02334 1.06387 1.27091 2.22342 2.37814 3.15270 3.18322 3.22912 3.31960 3.33873 3.56704 3.63506 3.99375 4.14426 4.33478 4.61426 4.73412 4.81549 4.83157 4.93871 4.99101 5.00017 5.04694 5.12281 5.28199 5.40154 5.50064 5.62911 5.78951 5.87719 5.89044 5.99091 6.05003 6.16844 6.20095 6.25528 6.36479 6.41848 6.57964 6.67337 6.73324 7.43365 7.54204 8.34163 9.01671 9.31342 10.57608 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.004098 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.622264 B = 6830.209737 C = 8551.534585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.106 0.894 9 S 0.155 5.845 10 C 0.182 3.818 11 N -0.303 5.303 12 N -0.254 5.254 13 C 0.170 3.830 14 C -0.027 4.027 15 C -0.069 4.069 16 C -0.130 4.130 17 C -0.086 4.086 18 C -0.156 4.156 19 C 0.133 3.867 20 F -0.123 7.123 21 N -0.434 5.434 22 C 0.129 3.871 23 C -0.101 4.101 24 C -0.109 4.109 25 C -0.111 4.111 26 C -0.106 4.106 27 C -0.099 4.099 28 H 0.275 0.725 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 -21.792 0.902 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.686 4.686 8 H 0.124 0.876 9 S 0.389 5.611 10 C -0.186 4.186 11 N -0.148 5.148 12 N -0.094 5.094 13 C -0.096 4.096 14 C -0.031 4.031 15 C -0.089 4.089 16 C -0.148 4.148 17 C -0.105 4.105 18 C -0.175 4.175 19 C 0.111 3.889 20 F -0.102 7.102 21 N -0.128 5.128 22 C 0.038 3.962 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.487 -20.813 0.869 20.836 hybrid contribution 0.747 0.735 -0.214 1.069 sum 0.260 -20.078 0.655 20.090 Atomic orbital electron populations 1.69960 1.06067 1.28538 1.46613 1.25068 0.95190 0.99646 0.93312 0.85916 0.79647 0.79872 0.78801 1.19855 1.20613 1.18924 1.23263 0.97361 0.89217 1.58765 0.87603 1.83613 0.97118 0.95099 1.85260 1.28716 1.02373 0.84786 1.02699 1.74813 0.98694 1.18208 1.23115 1.74354 1.26229 0.94133 1.14674 1.22332 0.80581 0.94627 1.12028 1.17491 0.98493 0.88723 0.98412 1.21138 0.98647 0.92621 0.96503 1.21058 0.98272 0.95430 1.00020 1.21079 0.95481 0.99506 0.94411 1.21071 1.02865 0.91283 1.02305 1.17701 0.94024 0.87391 0.89749 1.91567 1.82943 1.68435 1.67207 1.43733 1.04718 1.05278 1.59108 1.17535 0.87299 0.95896 0.95468 1.21170 0.97650 0.96637 0.96646 1.21000 0.93909 0.99038 0.98767 1.21250 0.99376 0.98880 0.93437 1.21046 0.96157 0.96258 0.98979 1.21276 0.94553 0.98696 0.97358 0.91556 0.85228 0.84991 0.84853 0.84318 0.85746 0.85261 0.85457 0.85002 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.48 13.22 55.48 0.73 -23.75 16 2 C 0.08 2.11 5.49 -17.48 -0.10 2.02 16 3 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.22 9.37 30.88 0.29 -14.93 16 8 H 0.11 3.10 6.92 -52.49 -0.36 2.74 16 9 S 0.16 3.94 21.58 -107.50 -2.32 1.62 16 10 C 0.18 4.40 8.01 -87.65 -0.70 3.70 16 11 N -0.30 -7.91 11.02 30.82 0.34 -7.57 16 12 N -0.25 -6.07 12.03 32.60 0.39 -5.68 16 13 C 0.17 3.45 7.11 -153.63 -1.09 2.36 16 14 C -0.03 -0.44 5.68 -104.92 -0.60 -1.03 16 15 C -0.07 -0.86 9.13 -39.18 -0.36 -1.22 16 16 C -0.13 -1.20 10.03 -39.63 -0.40 -1.60 16 17 C -0.09 -0.74 10.04 -39.50 -0.40 -1.13 16 18 C -0.16 -1.67 10.01 -39.57 -0.40 -2.07 16 19 C 0.13 1.97 7.29 -39.00 -0.28 1.69 16 20 F -0.12 -2.15 16.66 2.25 0.04 -2.11 16 21 N -0.43 -8.74 2.86 -58.11 -0.17 -8.91 16 22 C 0.13 2.11 4.38 -83.61 -0.37 1.75 16 23 C -0.10 -1.42 9.95 -39.40 -0.39 -1.81 16 24 C -0.11 -1.17 10.04 -39.61 -0.40 -1.57 16 25 C -0.11 -1.09 10.04 -39.55 -0.40 -1.49 16 26 C -0.11 -1.17 10.04 -39.61 -0.40 -1.57 16 27 C -0.10 -1.43 9.95 -39.40 -0.39 -1.82 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.13 1.59 7.69 -52.49 -0.40 1.18 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -33.50 352.19 -10.36 -43.85 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.28 Total: -0.45 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -6.37 Total: -18.74 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 1.30 Total: -45.91 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.32 Total: 1.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.50 -10.36 -43.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002622463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.231 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds