Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46963 * 2 1 4 4 C 1.36808 * 127.15966 * 86.41367 * 3 2 1 5 5 S 1.76201 * 126.38778 * 359.97438 * 4 3 2 6 6 C 1.76205 * 99.99735 * 179.71424 * 5 4 3 7 7 H 1.07999 * 120.00037 * 0.02562 * 6 5 4 8 8 C 1.38606 * 120.00022 * 180.02562 * 6 5 4 9 9 N 1.31669 * 119.99716 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00035 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47133 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47287 * 119.99968 * 10 8 6 13 13 H 1.48500 * 109.47007 * 239.99666 * 10 8 6 14 14 N 1.31540 * 107.21976 * 179.73128 * 4 3 2 15 15 N 1.28518 * 110.03590 * 0.25981 * 14 4 3 16 16 C 1.31522 * 109.96000 * 0.02562 * 15 14 4 17 17 C 1.47738 * 126.44594 * 180.02562 * 16 15 14 18 18 C 1.39662 * 120.08684 * 198.88747 * 17 16 15 19 19 C 1.37819 * 119.90174 * 179.69692 * 18 17 16 20 20 C 1.38895 * 120.09321 * 0.60264 * 19 18 17 21 21 O 1.35848 * 119.90805 * 179.69639 * 20 19 18 22 22 C 1.42902 * 117.00279 * 359.97438 * 21 20 19 23 23 F 1.39908 * 109.47067 * 300.00074 * 22 21 20 24 24 F 1.39900 * 109.47068 * 59.99714 * 22 21 20 25 25 C 1.38890 * 120.18549 * 359.67849 * 20 19 18 26 26 C 1.37825 * 120.08953 * 0.02562 * 25 20 19 27 27 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47265 * 300.00053 * 1 2 3 29 29 H 1.09000 * 109.47031 * 60.00159 * 1 2 3 30 30 H 1.09001 * 109.47265 * 239.99947 * 2 1 3 31 31 H 1.09000 * 109.47031 * 119.99840 * 2 1 3 32 32 H 0.97001 * 119.99687 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.05143 * 0.02562 * 18 17 16 34 34 H 1.07998 * 119.95522 * 180.28080 * 19 18 17 35 35 H 1.08993 * 109.47537 * 180.02562 * 22 21 20 36 36 H 1.07990 * 119.95556 * 180.02562 * 25 20 19 37 37 H 1.07993 * 120.04619 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2294 2.1831 1.0882 5 16 1.9628 1.7480 2.7747 6 6 2.4508 3.2488 3.5585 7 1 2.7894 4.0837 2.9631 8 6 2.4003 3.3577 4.9394 9 7 1.9880 2.3395 5.6654 10 14 2.9169 4.9488 5.7703 11 1 3.3370 5.9318 4.7396 12 1 1.7733 5.4983 6.5421 13 1 4.0517 4.6812 6.6900 14 7 2.6736 3.3376 0.6408 15 7 2.7484 3.3134 -0.6420 16 6 2.3559 2.1418 -1.0926 17 6 2.2969 1.7205 -2.5074 18 6 1.5112 0.6278 -2.8804 19 6 1.4540 0.2419 -4.2022 20 6 2.1862 0.9304 -5.1610 21 8 2.1319 0.5430 -6.4619 22 6 1.3028 -0.5793 -6.7706 23 9 1.7522 -1.6996 -6.0632 24 9 -0.0183 -0.2972 -6.4069 25 6 2.9734 2.0140 -4.7934 26 6 3.0314 2.4102 -3.4746 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.9523 2.4158 6.6317 33 1 0.9451 0.0892 -2.1349 34 1 0.8432 -0.6001 -4.4922 35 1 1.3500 -0.7826 -7.8404 36 1 3.5408 2.5469 -5.5419 37 1 3.6434 3.2531 -3.1896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002791539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = -44.851690 kcal Electronic energy + Delta-G solvation = -26389.564834 eV Core-core repulsion = 22123.397821 eV Total energy + Delta-G solvation = -4266.167013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.74262 -47.72932 -42.04791 -40.13369 -37.73278 -35.41231 -32.68289 -31.77379 -31.28604 -30.26128 -28.70397 -26.50271 -25.66648 -24.15313 -23.26828 -22.90862 -21.43562 -20.56387 -19.37172 -18.44298 -18.29954 -18.02128 -17.11105 -16.49769 -15.82534 -15.51193 -15.31193 -14.96551 -14.95277 -14.87660 -14.58125 -14.31902 -14.04576 -13.97332 -13.37168 -13.30040 -13.08136 -12.96014 -12.94717 -12.31318 -12.28442 -11.94934 -11.42952 -11.30122 -11.17352 -11.14340 -11.02414 -10.64817 -10.19502 -9.90697 -9.84505 -9.65400 -9.24660 -9.17509 -8.88331 -8.21914 -6.75480 -6.49445 -4.23397 0.80528 1.13029 2.18632 2.40709 2.42215 3.07226 3.16907 3.21856 3.25193 3.35312 3.36562 3.80698 3.88219 3.99487 4.23087 4.42205 4.52659 4.62062 4.68803 4.94725 4.98370 5.00509 5.02122 5.11524 5.24208 5.34769 5.58692 5.64312 5.72491 5.78243 5.95798 5.96290 6.15678 6.30133 6.33205 6.55030 6.67813 6.78955 7.32144 7.55588 8.36083 9.03226 9.39392 10.58884 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.002487 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.976483 B =11257.016942 C =11993.721191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 N -0.472 5.472 4 C 0.176 3.824 5 S 0.139 5.861 6 C -0.531 4.531 7 H 0.106 0.894 8 C 0.075 3.925 9 N -0.878 5.878 10 Si 0.932 3.068 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.304 5.304 15 N -0.270 5.270 16 C 0.169 3.831 17 C -0.008 4.008 18 C -0.092 4.092 19 C -0.184 4.184 20 C 0.100 3.900 21 O -0.320 6.320 22 C 0.411 3.589 23 F -0.199 7.199 24 F -0.198 7.198 25 C -0.128 4.128 26 C -0.052 4.052 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.274 0.726 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.181 0.819 36 H 0.139 0.861 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -9.936 -22.893 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.025 4.025 3 N -0.169 5.169 4 C -0.194 4.194 5 S 0.372 5.628 6 C -0.680 4.680 7 H 0.124 0.876 8 C -0.134 4.134 9 N -0.514 5.514 10 Si 0.757 3.243 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.150 5.150 15 N -0.112 5.112 16 C -0.097 4.097 17 C -0.011 4.011 18 C -0.112 4.112 19 C -0.202 4.202 20 C 0.056 3.944 21 O -0.238 6.238 22 C 0.321 3.679 23 F -0.181 7.181 24 F -0.180 7.180 25 C -0.146 4.146 26 C -0.072 4.072 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.197 0.803 36 H 0.157 0.843 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.491 -9.526 -22.207 24.292 hybrid contribution -0.035 0.367 0.193 0.416 sum -2.526 -9.159 -22.014 23.976 Atomic orbital electron populations 1.22260 0.94016 1.03289 1.03916 1.21981 0.95873 0.79786 1.04870 1.46372 1.52338 1.13092 1.05140 1.28434 1.02101 0.90294 0.98582 1.83411 1.77156 1.21723 0.80483 1.23256 1.50951 0.99874 0.93936 0.87595 1.25067 0.93974 0.98403 0.95954 1.69967 1.44012 1.30465 1.06932 0.85874 0.78309 0.81145 0.78963 1.18794 1.20357 1.20362 1.74772 1.21302 1.17614 1.01265 1.74237 1.16549 1.15832 1.04604 1.22437 1.08182 0.90551 0.88498 1.17484 0.99167 0.96527 0.87901 1.21411 0.97871 0.95994 0.95904 1.21350 1.02945 1.02491 0.93435 1.18955 0.97924 0.95987 0.81554 1.86595 1.64517 1.46677 1.26003 1.23355 0.73223 0.75105 0.96247 1.93107 1.88804 1.53853 1.82295 1.93108 1.37993 1.93121 1.93797 1.20349 1.01080 0.96582 0.96600 1.21066 0.96877 0.98724 0.90537 0.90268 0.90434 0.91934 0.88738 0.88191 0.91675 0.84253 0.84690 0.80264 0.84292 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.60 37.16 0.36 -1.77 16 2 C 0.10 1.35 5.84 -4.04 -0.02 1.33 16 3 N -0.47 -8.90 2.83 -114.03 -0.32 -9.23 16 4 C 0.18 4.07 8.06 -87.87 -0.71 3.37 16 5 S 0.14 3.42 21.47 -107.50 -2.31 1.11 16 6 C -0.53 -14.81 9.37 30.87 0.29 -14.52 16 7 H 0.11 3.07 6.92 -52.49 -0.36 2.71 16 8 C 0.08 2.03 5.49 -17.49 -0.10 1.94 16 9 N -0.88 -24.32 13.22 55.48 0.73 -23.58 16 10 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 11 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 14 N -0.30 -7.67 11.02 30.77 0.34 -7.33 16 15 N -0.27 -6.10 12.02 32.56 0.39 -5.71 16 16 C 0.17 3.23 7.69 -153.81 -1.18 2.05 16 17 C -0.01 -0.12 5.86 -104.95 -0.62 -0.73 16 18 C -0.09 -1.16 8.62 -39.20 -0.34 -1.50 16 19 C -0.18 -2.09 8.24 -39.49 -0.33 -2.42 16 20 C 0.10 1.11 6.49 -39.10 -0.25 0.86 16 21 O -0.32 -2.90 10.42 -19.26 -0.20 -3.10 16 22 C 0.41 2.57 5.98 101.05 0.60 3.17 16 23 F -0.20 -1.59 15.57 2.25 0.04 -1.55 16 24 F -0.20 -1.62 15.57 2.25 0.04 -1.58 16 25 C -0.13 -1.42 9.97 -39.49 -0.39 -1.82 16 26 C -0.05 -0.69 9.70 -39.20 -0.38 -1.07 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.74 6.94 -51.93 -0.36 0.38 16 30 H 0.09 1.07 5.82 -51.93 -0.30 0.77 16 31 H 0.10 1.36 7.97 -51.93 -0.41 0.94 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.14 1.59 3.31 -52.49 -0.17 1.41 16 34 H 0.14 1.37 5.07 -52.49 -0.27 1.10 16 35 H 0.18 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.15 1.92 7.97 -52.49 -0.42 1.50 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -33.51 338.69 -7.41 -40.92 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -3.12 Total: -0.17 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -3.07 Total: -11.12 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 1.14 Total: -45.84 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.20 Total: -3.10 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.07 Total: -3.13 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.31 Total: 1.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.51 -7.41 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002791539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.932 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds