Wall clock time and date at job start Tue Mar 31 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47221 * 45.55752 * 3 2 1 5 5 N 1.46500 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00201 * 270.00114 * 5 4 3 7 7 C 1.50699 * 109.47110 * 269.99857 * 6 5 4 8 8 H 1.08002 * 119.99716 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00453 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00566 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99720 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47099 * 89.99706 * 11 9 7 13 13 H 1.48493 * 109.47115 * 209.99759 * 11 9 7 14 14 H 1.48503 * 109.46927 * 330.00150 * 11 9 7 15 15 C 1.34774 * 120.00322 * 89.99640 * 5 4 3 16 16 O 1.21285 * 120.00211 * 180.02562 * 15 5 4 17 17 C 1.50700 * 120.00083 * 0.02562 * 15 5 4 18 18 N 1.46493 * 109.47678 * 179.97438 * 17 15 5 19 19 C 1.34525 * 124.46165 * 269.98311 * 18 17 15 20 20 O 1.21448 * 125.71259 * 0.03301 * 19 18 17 21 21 C 1.47821 * 108.58246 * 180.02562 * 19 18 17 22 22 C 1.38564 * 134.29568 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71574 * 180.20994 * 22 21 19 24 24 C 1.38220 * 120.45711 * 359.50655 * 23 22 21 25 25 C 1.38614 * 120.46568 * 0.47968 * 24 23 22 26 26 C 1.38568 * 119.71701 * 359.76831 * 25 24 23 27 27 C 1.34525 * 124.46176 * 89.99935 * 18 17 15 28 28 O 1.21446 * 125.70834 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.47207 * 285.55290 * 3 2 1 30 30 H 1.09001 * 109.47052 * 165.55423 * 3 2 1 31 31 H 1.08994 * 109.47674 * 59.99742 * 4 3 2 32 32 H 1.08997 * 109.47159 * 299.99122 * 4 3 2 33 33 H 1.08997 * 109.46823 * 29.99363 * 6 5 4 34 34 H 1.08998 * 109.47481 * 149.99876 * 6 5 4 35 35 H 0.96995 * 120.00424 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.46611 * 59.99736 * 17 15 5 37 37 H 1.09004 * 109.47310 * 300.00646 * 17 15 5 38 38 H 1.08002 * 120.13758 * 359.92268 * 22 21 19 39 39 H 1.07998 * 119.76663 * 179.72326 * 23 22 21 40 40 H 1.08001 * 119.76807 * 180.24655 * 24 23 22 41 41 H 1.07994 * 120.14144 * 179.74580 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0091 -1.0299 5 7 4.5835 -1.0080 -1.0303 6 6 5.3151 -0.1018 -1.9190 7 6 5.5664 -0.7860 -3.2379 8 1 5.2158 -1.7949 -3.3983 9 6 6.2430 -0.1239 -4.2403 10 7 6.4618 -0.7208 -5.3915 11 14 6.8487 1.6214 -3.9632 12 1 8.2225 1.5850 -3.4003 13 1 6.8627 2.3517 -5.2560 14 1 5.9426 2.3147 -3.0126 15 6 5.2583 -1.8406 -0.2131 16 8 6.4711 -1.8394 -0.2131 17 6 4.5058 -2.7732 0.7008 18 7 5.4586 -3.5677 1.4799 19 6 5.9537 -4.7571 1.0929 20 8 5.6864 -5.3334 0.0578 21 6 6.8779 -5.2453 2.1382 22 6 7.6599 -6.3796 2.2855 23 6 8.4330 -6.5381 3.4250 24 6 8.4367 -5.5680 4.4096 25 6 7.6597 -4.4279 4.2759 26 6 6.8779 -4.2583 3.1444 27 6 5.9533 -3.2041 2.6769 28 8 5.6847 -2.1811 3.2738 29 1 2.9715 -0.2747 0.9901 30 1 2.9709 0.9960 -0.2564 31 1 2.7551 -0.7338 -2.0199 32 1 2.7557 -2.0045 -0.7735 33 1 4.7252 0.7998 -2.0840 34 1 6.2674 0.1657 -1.4612 35 1 6.9381 -0.2550 -6.0965 36 1 3.8798 -3.4382 0.1057 37 1 3.8785 -2.1920 1.3766 38 1 7.6635 -7.1393 1.5177 39 1 9.0394 -7.4240 3.5427 40 1 9.0463 -5.7010 5.2912 41 1 7.6634 -3.6752 5.0503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002858456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:24 Heat of formation + Delta-G solvation = -8.312666 kcal Electronic energy + Delta-G solvation = -28886.233033 eV Core-core repulsion = 24733.127130 eV Total energy + Delta-G solvation = -4153.105903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45801 -39.54961 -38.66618 -38.51949 -36.96724 -35.88419 -35.38628 -32.98839 -32.38655 -31.44091 -31.09561 -29.20371 -27.32916 -25.25856 -24.23270 -23.77283 -22.38528 -22.25114 -20.19214 -18.87152 -18.03772 -17.79433 -17.52298 -17.17634 -16.85123 -16.57217 -15.99737 -15.48618 -15.42945 -14.90742 -14.81160 -14.68640 -14.54421 -14.30843 -14.00826 -13.98544 -13.77551 -13.31628 -12.97544 -12.66070 -12.64532 -12.56309 -12.42860 -12.29756 -12.00179 -11.81615 -11.64828 -11.12822 -10.95705 -10.71756 -10.59041 -10.41683 -10.36677 -10.24906 -9.62583 -9.55333 -9.52722 -9.12853 -8.64285 -8.03440 -6.13265 -4.13598 -0.13805 0.66840 1.84433 2.08740 2.63585 2.73870 2.84419 3.00005 3.24989 3.30210 3.31207 3.33096 3.45399 3.48028 4.04040 4.14022 4.31782 4.34370 4.53411 4.69549 4.73271 4.82021 4.86621 4.90581 5.00699 5.07688 5.11920 5.19066 5.26979 5.34895 5.45688 5.63920 5.67039 5.77820 5.85450 5.95262 6.26010 6.50198 6.53441 6.80014 7.06855 7.11177 7.49615 7.51829 7.54887 7.91029 8.37484 8.63168 8.90692 9.45327 10.99881 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.003626 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.253926 B = 7720.396381 C = 9334.162103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.216 3.784 3 C -0.052 4.052 4 C 0.113 3.887 5 N -0.586 5.586 6 C 0.216 3.784 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.894 5.894 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.498 3.502 16 O -0.520 6.520 17 C 0.088 3.912 18 N -0.559 5.559 19 C 0.577 3.423 20 O -0.452 6.452 21 C -0.131 4.131 22 C -0.046 4.046 23 C -0.097 4.097 24 C -0.099 4.099 25 C -0.046 4.046 26 C -0.134 4.134 27 C 0.581 3.419 28 O -0.463 6.463 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -9.135 21.086 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.103 4.103 3 C -0.094 4.094 4 C -0.013 4.013 5 N -0.318 5.318 6 C 0.096 3.904 7 C -0.572 4.572 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.532 5.532 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.283 3.717 16 O -0.395 6.395 17 C -0.037 4.037 18 N -0.300 5.300 19 C 0.366 3.634 20 O -0.321 6.321 21 C -0.134 4.134 22 C -0.065 4.065 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.065 4.065 26 C -0.138 4.138 27 C 0.371 3.629 28 O -0.334 6.334 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.995 -8.802 20.578 22.404 hybrid contribution 0.793 1.019 -0.251 1.315 sum -0.202 -7.783 20.327 21.767 Atomic orbital electron populations 1.81227 1.12953 1.08765 1.08763 1.28991 0.94984 0.93177 0.93114 1.19897 0.81643 1.04693 1.03156 1.21423 0.81413 0.98258 1.00244 1.47834 1.05122 1.39407 1.39419 1.19773 0.92560 0.88653 0.89430 1.21293 1.37532 1.02667 0.95737 0.90534 1.24846 0.95146 0.97945 0.94908 1.69886 1.41109 1.37620 1.04549 0.86885 0.80184 0.84930 0.77876 1.19923 1.21030 1.18932 1.20392 0.88456 0.81584 0.81305 1.90727 1.13469 1.67576 1.67713 1.21748 0.90989 0.95402 0.95512 1.46002 1.43057 1.20770 1.20188 1.18309 0.79610 0.80010 0.85502 1.90843 1.58005 1.59603 1.23686 1.20560 1.00163 0.97050 0.95663 1.20826 0.92702 0.95366 0.97589 1.21450 0.97764 0.99470 0.92860 1.21440 0.97853 0.92991 0.99454 1.20789 0.92811 0.97449 0.95457 1.20546 1.00371 0.95844 0.97031 1.18273 0.79365 0.85348 0.79951 1.90788 1.58655 1.24964 1.59020 0.87385 0.86407 0.87925 0.90243 0.94647 0.94225 0.92463 0.85682 0.86027 0.83932 0.84112 0.84149 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.23 18.54 42.15 0.78 -5.45 16 2 C 0.22 2.45 15.43 -20.76 -0.32 2.13 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.11 1.42 5.17 -4.04 -0.02 1.39 16 5 N -0.59 -10.46 2.46 -175.06 -0.43 -10.89 16 6 C 0.22 4.79 4.23 -5.19 -0.02 4.77 16 7 C -0.53 -14.60 9.94 -34.44 -0.34 -14.94 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 10 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 11 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 15 C 0.50 9.29 7.74 -10.99 -0.09 9.20 16 16 O -0.52 -12.20 16.01 5.55 0.09 -12.11 16 17 C 0.09 1.20 4.78 -5.20 -0.02 1.18 16 18 N -0.56 -8.27 2.11 -118.91 -0.25 -8.52 16 19 C 0.58 8.78 8.02 -12.45 -0.10 8.68 16 20 O -0.45 -8.06 17.68 5.41 0.10 -7.96 16 21 C -0.13 -1.58 6.40 -104.83 -0.67 -2.25 16 22 C -0.05 -0.41 10.09 -39.32 -0.40 -0.80 16 23 C -0.10 -0.59 10.04 -39.45 -0.40 -0.99 16 24 C -0.10 -0.59 10.03 -39.45 -0.40 -0.98 16 25 C -0.05 -0.38 10.09 -39.32 -0.40 -0.78 16 26 C -0.13 -1.56 6.41 -104.83 -0.67 -2.24 16 27 C 0.58 8.27 8.02 -12.46 -0.10 8.17 16 28 O -0.46 -7.25 17.68 5.41 0.10 -7.15 16 29 H 0.11 0.84 7.22 -51.93 -0.38 0.46 16 30 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 33 H 0.04 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.13 1.49 7.22 -51.93 -0.38 1.11 16 37 H 0.12 1.24 7.01 -51.93 -0.36 0.88 16 38 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -38.56 371.22 -6.44 -45.00 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.30 Total: -2.23 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: -4.22 Total: 13.87 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.87 Total: -51.11 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: 0.28 Total: -27.22 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.56 -6.44 -45.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002858456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.689 kcal (2) G-P(sol) polarization free energy of solvation -38.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds