Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35944 * 117.00015 * 2 1 4 4 C 1.38179 * 120.00984 * 359.71924 * 3 2 1 5 5 C 1.39775 * 119.85804 * 179.77552 * 4 3 2 6 6 C 1.47331 * 120.06742 * 180.25894 * 5 4 3 7 7 N 1.29872 * 119.99950 * 180.22949 * 6 5 4 8 8 N 1.40100 * 120.00004 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99985 * 179.97438 * 8 7 6 10 10 O 1.21568 * 120.00178 * 359.97438 * 9 8 7 11 11 C 1.48070 * 119.99984 * 179.97438 * 9 8 7 12 12 C 1.39856 * 120.92501 * 359.72050 * 11 9 8 13 13 C 1.38132 * 118.99696 * 179.79316 * 12 11 9 14 14 N 1.31821 * 120.89628 * 0.49032 * 13 12 11 15 15 C 1.31828 * 122.06230 * 359.74135 * 14 13 12 16 16 C 1.38131 * 120.89503 * 0.02562 * 15 14 13 17 17 C 1.39841 * 119.86505 * 0.48099 * 5 4 3 18 18 C 1.37751 * 120.01392 * 359.77457 * 17 5 4 19 19 C 1.38968 * 120.14760 * 359.97438 * 18 17 5 20 20 O 1.35701 * 119.93562 * 179.97438 * 19 18 17 21 21 C 1.34786 * 116.99835 * 354.38641 * 20 19 18 22 22 H 1.07994 * 120.00023 * 5.05652 * 21 20 19 23 23 C 1.38627 * 119.99596 * 185.06211 * 21 20 19 24 24 N 1.31572 * 120.00491 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99593 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47536 * 59.99958 * 25 23 21 27 27 H 1.48501 * 109.47301 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47208 * 299.99727 * 25 23 21 29 29 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47178 * 60.00235 * 1 2 3 31 31 H 1.08998 * 109.47061 * 300.00444 * 1 2 3 32 32 H 1.08007 * 120.07137 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00312 * 0.22446 * 6 5 4 34 34 H 0.96999 * 120.00335 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.50274 * 359.97438 * 12 11 9 36 36 H 1.08000 * 119.55033 * 180.22698 * 13 12 11 37 37 H 1.07992 * 119.55076 * 180.02562 * 15 14 13 38 38 H 1.07997 * 120.49946 * 180.02562 * 16 15 14 39 39 H 1.08001 * 119.99491 * 179.75402 * 17 5 4 40 40 H 1.08003 * 119.92745 * 179.97438 * 18 17 5 41 41 H 0.96993 * 119.99942 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3703 -0.0059 5 6 1.9316 3.6140 -0.0011 6 6 1.1339 4.8526 -0.0016 7 7 1.7280 6.0076 -0.0016 8 7 0.9694 7.1854 -0.0015 9 6 1.5859 8.3840 -0.0011 10 8 2.8001 8.4430 -0.0003 11 6 0.7842 9.6288 -0.0015 12 6 -0.6136 9.5836 -0.0083 13 6 -1.3220 10.7694 -0.0041 14 7 -0.6981 11.9306 -0.0036 15 6 0.6173 12.0182 -0.0019 16 6 1.4038 10.8827 -0.0012 17 6 3.3285 3.6802 -0.0006 18 6 4.0732 2.5214 -0.0001 19 6 3.4397 1.2845 0.0004 20 8 4.1776 0.1457 0.0004 21 6 5.5133 0.2821 -0.1176 22 1 5.9571 1.2666 -0.1244 23 6 6.3174 -0.8415 -0.2304 24 7 5.7768 -2.0410 -0.2218 25 14 8.1685 -0.6525 -0.3948 26 1 8.7021 0.0522 0.7985 27 1 8.7958 -1.9945 -0.4994 28 1 8.4793 0.1350 -1.6148 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 0.2152 2.3153 -0.0109 33 1 0.0552 4.8003 -0.0019 34 1 0.0006 7.1384 -0.0018 35 1 -1.1314 8.6358 -0.0137 36 1 -2.4017 10.7448 -0.0055 37 1 1.0862 12.9910 -0.0012 38 1 2.4808 10.9620 0.0005 39 1 3.8235 4.6401 -0.0009 40 1 5.1520 2.5742 -0.0001 41 1 6.3395 -2.8271 -0.3003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002950256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = 19.828123 kcal Electronic energy + Delta-G solvation = -26935.687727 eV Core-core repulsion = 22783.802100 eV Total energy + Delta-G solvation = -4151.885627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92039 -39.71982 -39.20702 -37.66803 -37.06137 -35.66976 -33.48062 -32.55880 -32.02365 -31.49672 -29.70503 -28.92436 -26.75330 -25.67989 -25.10222 -23.96045 -23.01188 -21.76678 -21.06661 -20.45011 -18.75002 -18.20941 -17.47453 -17.38984 -16.59343 -16.20925 -15.90400 -15.68128 -15.42549 -15.25860 -15.23236 -14.66149 -14.33290 -14.17917 -14.12759 -14.04912 -13.92979 -13.58885 -13.45197 -12.67227 -12.43509 -12.22201 -11.79319 -11.60185 -11.52660 -11.18159 -11.01033 -10.84057 -10.59984 -10.59344 -10.52654 -10.37772 -10.12756 -9.94543 -9.71847 -9.54680 -9.21901 -8.78895 -7.99134 -6.96011 -6.59001 -4.11138 0.20866 0.58117 1.26174 2.13611 2.27091 2.49669 2.94572 3.08919 3.12472 3.13271 3.43750 3.86402 3.91298 3.91928 4.00512 4.24799 4.41444 4.46062 4.55440 4.73698 4.91433 4.93631 5.03029 5.03967 5.24114 5.29557 5.39274 5.48727 5.51006 5.55020 5.77625 5.78121 5.88788 6.07760 6.11939 6.24175 6.46128 6.78504 6.88446 6.95014 7.12765 7.21102 7.39543 7.44874 7.48933 7.81493 8.05931 8.28354 8.84412 9.51738 10.56652 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.001987 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.034263 B =14088.992065 C =15777.698809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.148 4.148 6 C 0.155 3.845 7 N -0.265 5.265 8 N -0.579 5.579 9 C 0.572 3.428 10 O -0.494 6.494 11 C -0.079 4.079 12 C -0.145 4.145 13 C 0.098 3.902 14 N -0.471 5.471 15 C 0.099 3.901 16 C -0.113 4.113 17 C -0.038 4.038 18 C -0.227 4.227 19 C 0.151 3.849 20 O -0.148 6.148 21 C -0.390 4.390 22 H 0.098 0.902 23 C 0.042 3.958 24 N -0.846 5.846 25 Si 0.944 3.056 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.378 0.622 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 18.290 0.247 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.051 4.051 7 N -0.071 5.071 8 N -0.320 5.320 9 C 0.358 3.642 10 O -0.366 6.366 11 C -0.092 4.092 12 C -0.166 4.166 13 C -0.059 4.059 14 N -0.180 5.180 15 C -0.058 4.058 16 C -0.133 4.133 17 C -0.058 4.058 18 C -0.246 4.246 19 C 0.094 3.906 20 O -0.048 6.048 21 C -0.465 4.465 22 H 0.115 0.885 23 C -0.165 4.165 24 N -0.479 5.479 25 Si 0.768 3.232 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.192 1.192 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.216 0.784 35 H 0.156 0.844 36 H 0.181 0.819 37 H 0.183 0.817 38 H 0.169 0.831 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.555 18.979 0.249 23.324 hybrid contribution -0.373 -0.875 -0.077 0.954 sum -13.928 18.104 0.172 22.842 Atomic orbital electron populations 1.22904 0.80321 1.03059 1.00257 1.86250 1.19447 1.26135 1.89770 1.17940 0.89321 0.84446 1.07664 1.20642 0.98369 0.90578 1.05856 1.17423 0.92489 0.88776 1.16515 1.24421 0.97011 0.90791 0.92922 1.75224 1.21727 0.91905 1.18272 1.46742 1.07795 1.04029 1.73450 1.17824 0.87559 0.81533 0.77303 1.90823 1.13182 1.86430 1.46193 1.20319 0.93749 0.93963 1.01149 1.22378 0.93457 1.00800 0.99916 1.22779 1.00819 0.87002 0.95293 1.67588 1.11361 1.29015 1.10058 1.22869 0.89015 0.98802 0.95120 1.22376 1.02844 0.91442 0.96688 1.20967 0.92331 0.97886 0.94666 1.20880 1.00881 0.90627 1.12250 1.18881 0.88287 0.87688 0.95751 1.84011 1.19733 1.25815 1.75266 1.21472 0.78373 0.95120 1.51570 0.88492 1.25394 1.00883 0.94155 0.96081 1.70058 1.36710 0.97786 1.43300 0.85720 0.79802 0.78146 0.79506 1.19208 1.20130 1.19208 0.89025 0.93511 0.93530 0.85923 0.87545 0.78386 0.84424 0.81936 0.81693 0.83062 0.85815 0.84430 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.30 -6.16 10.28 -34.18 -0.35 -6.51 16 3 C 0.05 1.06 6.70 -39.12 -0.26 0.80 16 4 C -0.13 -2.20 8.77 -39.03 -0.34 -2.54 16 5 C -0.15 -2.47 5.87 -105.02 -0.62 -3.08 16 6 C 0.16 2.12 10.74 -14.68 -0.16 1.96 16 7 N -0.27 -4.06 10.15 32.14 0.33 -3.73 16 8 N -0.58 -6.96 6.22 30.59 0.19 -6.77 16 9 C 0.57 7.52 7.91 -12.23 -0.10 7.43 16 10 O -0.49 -8.61 16.78 5.31 0.09 -8.52 16 11 C -0.08 -0.76 5.91 -104.65 -0.62 -1.38 16 12 C -0.14 -0.98 9.62 -39.02 -0.38 -1.35 16 13 C 0.10 0.65 11.17 -17.60 -0.20 0.45 16 14 N -0.47 -3.96 10.34 -13.31 -0.14 -4.10 16 15 C 0.10 0.73 11.17 -17.59 -0.20 0.54 16 16 C -0.11 -0.98 9.68 -39.01 -0.38 -1.36 16 17 C -0.04 -0.71 9.57 -39.16 -0.37 -1.09 16 18 C -0.23 -4.82 9.14 -39.49 -0.36 -5.18 16 19 C 0.15 3.58 6.67 -38.83 -0.26 3.32 16 20 O -0.15 -4.14 9.53 -14.29 -0.14 -4.28 16 21 C -0.39 -10.53 9.48 30.88 0.29 -10.24 16 22 H 0.10 2.40 5.19 -52.49 -0.27 2.12 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 24 N -0.85 -24.08 13.67 55.48 0.76 -23.32 16 25 Si 0.94 19.87 29.55 -169.99 -5.02 14.84 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 28 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 31 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 32 H 0.12 1.56 6.28 -52.48 -0.33 1.23 16 33 H 0.11 1.01 8.02 -52.49 -0.42 0.59 16 34 H 0.38 2.96 6.79 -182.60 -1.24 1.71 16 35 H 0.14 0.53 6.54 -52.49 -0.34 0.19 16 36 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.15 1.26 7.74 -52.49 -0.41 0.86 16 39 H 0.12 2.27 7.54 -52.49 -0.40 1.87 16 40 H 0.14 2.89 5.62 -52.48 -0.29 2.60 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -35.47 367.16 -6.70 -42.17 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.90 Total: 3.99 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.05 Total: -9.31 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 1.14 Total: -37.92 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.40 Total: -19.30 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.47 -6.70 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002950256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.998 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds