Wall clock time and date at job start Tue Mar 31 2020 05:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86810 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47202 * 240.00018 * 3 2 1 5 5 H 1.48497 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46883 * 119.99921 * 3 2 1 7 7 C 1.38783 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00451 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.76194 * 100.00047 * 174.99114 * 9 7 2 11 11 C 1.38424 * 123.57329 * 5.11149 * 10 9 7 12 12 C 1.33377 * 115.10156 * 180.30903 * 11 10 9 13 13 S 1.70544 * 111.31085 * 359.75328 * 12 11 10 14 14 C 1.37827 * 123.57574 * 184.96049 * 10 9 7 15 15 C 1.41598 * 125.49520 * 359.97438 * 14 10 9 16 16 O 1.21820 * 120.00615 * 359.72059 * 15 14 10 17 17 N 1.34784 * 119.99839 * 179.72534 * 15 14 10 18 18 C 1.40068 * 119.99929 * 185.55159 * 17 15 14 19 19 C 1.38813 * 120.05799 * 24.80892 * 18 17 15 20 20 C 1.38132 * 119.97579 * 180.02562 * 19 18 17 21 21 C 1.38483 * 120.08867 * 359.97438 * 20 19 18 22 22 F 1.35096 * 119.94285 * 180.02562 * 21 20 19 23 23 C 1.38458 * 120.10988 * 359.78888 * 21 20 19 24 24 C 1.38295 * 120.02408 * 0.45992 * 23 21 20 25 25 F 1.35100 * 120.04823 * 179.79571 * 24 23 21 26 26 H 0.97000 * 119.99687 * 0.02562 * 1 2 3 27 27 H 1.08003 * 122.44892 * 0.04000 * 11 10 9 28 28 H 1.07999 * 124.34210 * 179.78530 * 12 11 10 29 29 H 0.96998 * 119.99916 * 5.54323 * 17 15 14 30 30 H 1.08006 * 120.00619 * 0.04987 * 19 18 17 31 31 H 1.08004 * 119.95528 * 179.97438 * 20 19 18 32 32 H 1.07998 * 119.99096 * 180.23766 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0097 -1.2018 -0.0005 8 1 3.0897 -1.2018 -0.0001 9 16 1.1287 -2.7278 -0.0005 10 6 2.4726 -3.8570 -0.1528 11 6 3.8021 -3.4717 -0.1341 12 6 4.6811 -4.4657 -0.2690 13 16 3.8953 -5.9714 -0.4240 14 6 2.3118 -5.2179 -0.3002 15 6 1.0711 -5.8985 -0.3498 16 8 0.0295 -5.2742 -0.2538 17 7 1.0426 -7.2373 -0.5031 18 6 -0.1816 -7.8973 -0.6688 19 6 -1.2758 -7.2144 -1.1820 20 6 -2.4825 -7.8668 -1.3443 21 6 -2.6022 -9.2019 -0.9962 22 9 -3.7837 -9.8372 -1.1566 23 6 -1.5119 -9.8878 -0.4886 24 6 -0.3030 -9.2378 -0.3194 25 9 0.7601 -9.9056 0.1798 26 1 -0.4850 0.8401 -0.0004 27 1 4.1052 -2.4411 -0.0229 28 1 5.7530 -4.3340 -0.2784 29 1 1.8699 -7.7437 -0.4987 30 1 -1.1834 -6.1734 -1.4546 31 1 -3.3337 -7.3351 -1.7432 32 1 -1.6064 -10.9299 -0.2213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003047309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:31 Heat of formation + Delta-G solvation = -60.752995 kcal Electronic energy + Delta-G solvation = -23318.476394 eV Core-core repulsion = 19326.246874 eV Total energy + Delta-G solvation = -3992.229520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 341.010 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.05560 -48.97021 -40.26253 -38.21378 -36.72362 -34.45552 -32.98637 -30.93509 -30.23063 -28.44586 -26.39156 -24.71505 -23.49785 -22.61575 -20.95261 -19.38881 -18.75839 -18.13606 -17.97540 -17.29588 -16.82901 -16.06723 -15.74725 -15.39500 -15.36783 -15.10457 -15.02499 -14.77070 -14.52577 -13.96788 -13.83641 -13.26386 -13.04414 -12.90759 -12.62685 -12.44142 -12.08983 -12.02686 -11.61394 -11.50075 -11.33340 -10.92670 -10.60067 -10.34391 -10.09445 -9.70338 -9.65564 -9.06814 -8.78002 -8.58236 -8.29208 -7.93245 -6.76606 -6.71306 -4.40205 0.76053 0.96993 1.09825 2.07250 2.33812 2.84059 3.00690 3.02420 3.06857 3.15792 3.32692 3.38597 3.79468 3.83295 3.86783 4.30256 4.55835 4.72020 4.79583 4.86479 5.10541 5.27709 5.40423 5.65464 5.70468 5.85683 5.92824 6.08016 6.21498 6.31742 6.39322 6.61159 6.71238 6.88373 7.23489 7.54456 7.91386 8.48548 8.74832 10.32287 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.003292 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.368841 B = 8503.865021 C =10260.757008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.085 3.915 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.592 4.592 8 H 0.092 0.908 9 S 0.239 5.761 10 C -0.048 4.048 11 C -0.135 4.135 12 C -0.200 4.200 13 S 0.103 5.897 14 C -0.334 4.334 15 C 0.593 3.407 16 O -0.508 6.508 17 N -0.677 5.677 18 C 0.136 3.864 19 C -0.080 4.080 20 C -0.135 4.135 21 C 0.094 3.906 22 F -0.137 7.137 23 C -0.168 4.168 24 C 0.082 3.918 25 F -0.133 7.133 26 H 0.280 0.720 27 H 0.150 0.850 28 H 0.159 0.841 29 H 0.408 0.592 30 H 0.172 0.828 31 H 0.145 0.855 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -14.394 -2.232 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.128 4.128 3 Si 0.750 3.250 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.739 4.739 8 H 0.110 0.890 9 S 0.502 5.498 10 C -0.178 4.178 11 C -0.170 4.170 12 C -0.341 4.341 13 S 0.362 5.638 14 C -0.470 4.470 15 C 0.387 3.613 16 O -0.388 6.388 17 N -0.321 5.321 18 C 0.038 3.962 19 C -0.100 4.100 20 C -0.154 4.154 21 C 0.073 3.927 22 F -0.116 7.116 23 C -0.188 4.188 24 C 0.059 3.941 25 F -0.111 7.111 26 H 0.091 0.909 27 H 0.168 0.832 28 H 0.176 0.824 29 H 0.244 0.756 30 H 0.189 0.811 31 H 0.163 0.837 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.533 -15.098 -2.206 15.268 hybrid contribution 2.120 2.119 0.246 3.008 sum 2.653 -12.979 -1.960 13.392 Atomic orbital electron populations 1.69938 1.06297 1.29225 1.42778 1.25151 0.95097 0.99958 0.92601 0.86085 0.79460 0.79969 0.79473 1.19266 1.20296 1.19281 1.23882 0.97118 0.93250 1.59673 0.89010 1.84285 1.01599 0.92800 1.71128 1.22654 1.00592 0.97027 0.97555 1.20274 0.91301 1.01225 1.04227 1.24861 1.03733 0.97376 1.08169 1.82246 0.97233 1.09270 1.75012 1.21780 0.95051 0.95872 1.34340 1.15676 0.88630 0.80127 0.76892 1.90807 1.33038 1.65431 1.49502 1.43430 1.06817 1.08212 1.73603 1.17849 0.88657 0.90154 0.99555 1.21406 0.90049 1.02450 0.96135 1.21182 0.99446 0.92561 1.02220 1.17243 0.81312 0.91073 1.03021 1.91499 1.44441 1.82087 1.93571 1.20734 0.91051 1.01761 1.05286 1.16963 0.84656 0.89673 1.02794 1.91490 1.54243 1.80181 1.85225 0.90943 0.83238 0.82367 0.75590 0.81098 0.83727 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.76 13.22 55.49 0.73 -22.03 16 2 C 0.08 2.15 5.49 -17.46 -0.10 2.05 16 3 Si 0.93 19.23 29.55 -169.99 -5.02 14.20 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.59 -15.04 9.18 30.93 0.28 -14.76 16 8 H 0.09 2.19 5.16 -52.49 -0.27 1.91 16 9 S 0.24 5.90 19.61 -107.50 -2.11 3.80 16 10 C -0.05 -1.01 6.14 -39.66 -0.24 -1.26 16 11 C -0.14 -2.55 9.34 -41.21 -0.38 -2.94 16 12 C -0.20 -3.08 10.88 29.03 0.32 -2.76 16 13 S 0.10 1.51 22.00 -107.50 -2.37 -0.85 16 14 C -0.33 -6.32 6.29 -38.45 -0.24 -6.56 16 15 C 0.59 11.09 7.40 -14.98 -0.11 10.98 16 16 O -0.51 -10.80 11.94 5.08 0.06 -10.74 16 17 N -0.68 -10.33 5.29 -12.38 -0.07 -10.39 16 18 C 0.14 1.96 6.44 -83.58 -0.54 1.42 16 19 C -0.08 -1.15 8.71 -39.41 -0.34 -1.49 16 20 C -0.13 -1.64 10.02 -39.53 -0.40 -2.04 16 21 C 0.09 1.12 7.30 -39.41 -0.29 0.83 16 22 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 23 C -0.17 -1.91 10.00 -39.48 -0.39 -2.30 16 24 C 0.08 1.04 7.31 -39.26 -0.29 0.76 16 25 F -0.13 -1.67 16.81 2.25 0.04 -1.63 16 26 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.15 2.83 5.57 -52.48 -0.29 2.54 16 28 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.41 5.39 7.44 -40.82 -0.30 5.09 16 30 H 0.17 2.77 5.78 -52.48 -0.30 2.47 16 31 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -27.63 317.95 -8.20 -35.83 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -1.57 Total: 6.67 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.72 Total: -18.05 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.67 Total: -32.42 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.06 Total: -10.74 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: 7.42 SS G_CDS: -4.47 Total: 2.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.63 -8.20 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003047309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.928 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds